Alignment Contig 4076

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF036K05+ TAGATAGAACTTAATAATTAACCATGGAGAAGGTCCAGCAAAAGAAATTACCGTTTACAA
rJMFF007P14+ AGATAGAACTTAATAATTAACCATGGAGAAGGTCCAGCAAAAGAAATTACCGTTTACAA
rJMFF011M06+ TCCAGCAAAAGAAATTACCGTTTACAA
rJMFF019K22+ AGATAGAACTTAATAATTAACCATGGAGAAGGTCCAGCAAAAGAAATTACCGTTTACAA
rJMFF014F04+ CCAGCAAAAGAAATTACCGTTTACAA
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consensus TAGATAGAACTTAATAATTAACCATGGAGAAGGTCCAGCAAAAGAAATTACCGTTTACAA

. : . : . : . : . : . :
rJMFF036K05+ GACTGTAAATAAACATGGATTGGCAATAAAAATTAATGAACAATTAAATCCCCAAGACTA
rJMFF007P14+ GACTGTAAATAAACATGGATTGGCAATAAAAATTAATGAACAATTAAATCCCCAAGACTA
rJMFF011M06+ GACTGTAAATAAACATGGATTGGCAATAAAAATTAATGAACAATTAAATCCCCAAGACTA
rJMFF019K22+ GACTGTAAATAAACATGGATTGGCAATAAAAATTAATGAACAATTAAATCCCCAAGACTA
JMFN018K02- CATGGATGGGCAATAAAAATTAATGAACAATTAAATCCCCAAGACTA
rJMFF014F04+ GACTGTAAATAAACATGGATTGGCAATAAAAATTAATGAACAATTAAATCCCCAAGACTA
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consensus GACTGTAAATAAACATGGATTGGCAATAAAAATTAATGAACAATTAAATCCCCAAGACTA

. : . : . : . : . : . :
rJMFF036K05+ GTAGTAGTTCTTTAGGGGCTGGGGATTTTACACACATAACAGTACCTAATGTTCACTACC
rJMFF007P14+ GTAGTAGTTCTTTAGGGGCTGGGGATTTTACACACATAACAGTACCTAATGTTCACTACC
rJMFF011M06+ GTAGTAGTTCTTTAGGGGCTGGGGATTTTACACACATAACAGTACCCAATGTTCACTACC
rJMFF019K22+ GTAGTAGTTCTTTAGGGGCTGGGGATTTTACACACATAACAGTACCTAATGTTCACTACC
rJMSF034O05+ TTCACTACC
JMFN018K02- GTAGTAGT-CTTTAGGGGCTGGGGATTTTACACACATAACAGTACCTAATGTTCACTACC
rJMFF014F04+ GTAGTAGTTCTTTAGGGGCTGGGGATTTTACACACATAACAGTACCCAATGTTCACTACC
rJMSF016E03+ AGTACCTAATGTTCACTACC
____________________________________________________________
consensus GTAGTAGTTCTTTAGGGGCTGGGGATTTTACACACATAACAGTACCTAATGTTCACTACC

. : . : . : . : . : . :
rJMFF036K05+ CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
rJMFF007P14+ CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
rJMFF011M06+ CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
rJMFF019K22+ CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
rJMSF044D18+ ACAGAAAGCGATGAACAAACGAGAAGGTAAAG
rJMSF034O05+ CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
JMFN018K02- CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
rJMFF014F04+ CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
rJMSF016E03+ CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG
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consensus CGAGCCTCGGGTCTTCACATCTCCATGGACAGAAAGCGATGAACAAACGAGAAGGTAAAG

. : . : . : . : . : . :
rJMFF036K05+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMFF007P14+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMFF011M06+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMFF019K22+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMSF044D18+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMSF034O05+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
JMFN018K02- ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMFF014F04+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMSF016E03+ ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG
rJMSF036N12+ GCAGTCTGTTCTGGCTGGTAG
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consensus ACGAGGCGACCAAAATCTATCATTGCTCGATCACAGCATGCAGTCTGTTCTGGCTGGTAG

. : . : . : . : . : . :
rJMFF036K05+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMFF007P14+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMFF011M06+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMFF019K22+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMSF044D18+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMSF034O05+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
JMFN018K02- TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMFF014F04+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMSF016E03+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
rJMSF036N12+ TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA
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consensus TCTTCTGAAGAAGTTGAGAGGCACAGAGGGGAGCTTGTGGCGAAACCTCGGGTGCCTCAA

. : . : . : . : . : . :
rJMFF036K05+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMFF007P14+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMFF011M06+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMFF019K22+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMSF044D18+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMSF034O05+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
JMFN018K02- CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMFF014F04+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMSF016E03+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
rJMSF036N12+ CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC
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consensus CATGTAGAATCCAGCAAGAAGGGCAACGACTTGGAATGGCGTGACGTAGAGGACTATGGC

. : . : . : . : . : . :
rJMFF036K05+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMFF007P14+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMFF011M06+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMFF019K22+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMSF044D18+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMSF034O05+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
JMFN018K02- AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMFF014F04+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMSF016E03+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
rJMSF036N12+ AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG
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consensus AGCCACCAGACAGAAAATCACGAAAAGTGCGGTGGCTCTCGGGTCTCTCCAGCTCAGTAG

. : . : . : . : . : . :
rJMFF036K05+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMFF007P14+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMFF011M06+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMFF019K22+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMSF044D18+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMSF034O05+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
JMFN018K02- AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMFF014F04+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMSF016E03+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
rJMSF036N12+ AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC
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consensus AGACTGCAGCCTCTCTCCTTGAGTAGCTAAATCGCCAACCACAGTTTGAATCCTTCCCGC

. : . : . : . : . : . :
rJMFF036K05+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMFF007P14+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMFF011M06+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMFF019K22+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMSF044D18+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMSF034O05+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
JMFN018K02- AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMFF014F04+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMSF016E03+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
rJMSF036N12+ AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA
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consensus AATGCTTCTAAGGCGGTCGTATCTCATCCTCACAACGTCGGGGGGACGTGAAGTCGGGAA

. : . : . : . : . : . :
rJMFF036K05+ GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMFF007P14+ GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMFF011M06+ GGTACCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMFF019K22+ GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMSF044D18+ GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMSF034O05+ GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
JMFN018K02- GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMFF014F04+ GGTACCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMSF016E03+ GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
rJMSF036N12+ GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT
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consensus GGTATCGAACTCCTCGTCGAGTTCATCGGGATGGGCATTGTCAGCACACGAGATACGGGT

. : . : . : . : . : . :
rJMFF036K05+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAA
rJMFF007P14+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAAAAGAG
rJMFF011M06+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAAAAG
rJMFF019K22+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAAAAGAG
rJMSF044D18+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCA
rJMSF034O05+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATC
JMFN018K02- GTCCATGTGAGGAGGATTCC
rJMFF014F04+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAAAAGAG
rJMSF016E03+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAAAAGAG
rJMSF036N12+ GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAAAAGAG
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consensus GTCCATGTGAGGAGGATTCCTCGGCCTCCATCGATAGTACCAGATTCCAATCAAAAAGAG

. : . : . : . : . : . :
rJMFF007P14+ ATAC
rJMFF019K22+ ATA
rJMFF014F04+ ATACAGGAATACGGT
rJMSF016E03+ ATACAGGAATACGGTGGGAAGGATAAGTTCGGGATAAAGAACCAGAATCAGGAACAAGAT
rJMSF036N12+ ATACAGGAATACGGTGGGAAGGATAAGTTCGGGATAAAGAAC
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consensus ATACAGGAATACGGTGGGAAGGATAAGTTCGGGATAAAGAACCAGAATCAGGAACAAGAT

. : . : . : . : . : . :
rJMSF016E03+ GTGAATCANAACAGTCGTGATCGGGTTTTCCAATTGCATA
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consensus GTGAATCANAACAGTCGTGATCGGGTTTTCCAATTGCATA