Alignment Contig 4053

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF031B12+ ATGAGCATATCCAAAGGAGTAGATAGTGCTTAACACAAAAATACACTCAAGCATCTAATA
rJMSF008O06+ ATATCCAAAGGAGTAGATAGTGCTTAACACAAAAATACACTCAAGCATCTAATA
____________________________________________________________
consensus ATGAGCATATCCAAAGGAGTAGATAGTGCTTAACACAAAAATACACTCAAGCATCTAATA

. : . : . : . : . : . :
rJMFF031B12+ CACCGGATCCAACATTTTAAATAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA
rJMFF028C07+ CATTTTAAATAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA
rJMSF003C11+ GGATCCAACATTTTAAATAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA
rJMSF042L12+ TTTTAAATAAATTCTACAAGTAGCNATTATTGTATGTCTAGATGCA
rJMSF009O06+ TCTATTATTGTATGTCTAGATGCA
rJMSF033L18+ GGATCCAACATTTTAAATAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA
rJMSF008O06+ CACCGGATCCAACATTTTAA-TAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA
rJMSF017P21+ GGATCCAACATTTTAAATAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA
rJMFF007A19+ AATAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA
____________________________________________________________
consensus CACCGGATCCAACATTTTAAATAAATTCTACAAGTATCTATTATTGTATGTCTAGATGCA

. : . : . : . : . : . :
rJMFF031B12+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMFF028C07+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMSF003C11+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMSF042L12+ AANTTANCATGATATCNGTTTGTNTACATAACTTTGGATGAACATATCANACTTTCATAG
rJMSF009O06+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMSF033L18+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMSF008O06+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMSF017P21+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMFF007A19+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
rJMSF008D21+ AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG
____________________________________________________________
consensus AACTTAACATGATATCAGTTTGTATACATAACTTTGGATGAACATATCACACTTTCATAG

. : . : . : . : . : . :
rJMFF031B12+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMFF028C07+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMSF003C11+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMSF042L12+ CACAGCATTCTCCTGCAGAAGATCGAGGAACGCATCCNTCCTGGCTATTTGAATTGNCAT
rJMSF009O06+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMSF033L18+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMSF008O06+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMSF017P21+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMFF007A19+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
rJMSF008D21+ CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT
____________________________________________________________
consensus CACAGCATTCTCCTGCAAAAGATCGAGGAACGCATCCATCCTGGCTATTTGAATTGCCAT

. : . : . : . : . : . :
rJMFF031B12+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMFF028C07+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMSF003C11+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMSF042L12+ GGCAGGAGGGGGTAATCAAANGAGAGGATNCATACTCATGCTGCATGAATAGCTTGNTTA
rJMSF009O06+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMSF033L18+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMSF008O06+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMSF017P21+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMFF007A19+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
rJMSF008D21+ GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA
____________________________________________________________
consensus GGCAGGAGGGGGTAATCAAAAGAGAGGATACATACTCATGCTGCATGAATAGCTTGTTTA

. : . : . : . : . : . :
rJMFF031B12+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMFF028C07+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMSF003C11+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMSF042L12+ GCTTCAAGCATCTTCTCATATTCCTCAATAGGATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMSF009O06+ GCTTCAAGCATCTTCTCATATTCCTCANTAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMSF033L18+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMSF008O06+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMSF017P21+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMFF007A19+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
rJMSF008D21+ GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT
____________________________________________________________
consensus GCTTCAAGCATCTTCTCATATTCCTCAATAG-ATTTGAAAAGTTCGGAGAAGTTGCCCTT

. : . : . : . : . : . :
rJMFF031B12+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMFF028C07+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMSF003C11+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMSF042L12+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMSF009O06+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMSF033L18+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMSF008O06+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMSF017P21+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMFF007A19+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
rJMSF008D21+ GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA
____________________________________________________________
consensus GCCAAAACCGCCACACCCGCCCTTCTGATACACCTCTCCATCTTCCTTCTTCATCATGCA

. : . : . : . : . : . :
rJMFF031B12+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMFF028C07+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMSF003C11+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMSF042L12+ CCCGACTCTCTGGATTATTTCTANAAATAGTGTCGGCCTGTCTCCNACAGGCTTGGNGAA
rJMSF009O06+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMSF033L18+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMSF008O06+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMSF017P21+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMFF007A19+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
rJMSF008D21+ CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA
____________________________________________________________
consensus CCCGACTCTCTGGATTATTTCTATAAATAGTGTCGGCCTGTCTCCAACAGGCTTGGTGAA

. : . : . : . : . : . :
rJMFF031B12+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMFF028C07+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMSF003C11+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMSF042L12+ NATTTGANGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCANNTCTTCANACTC
rJMSF009O06+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMSF033L18+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMSF008O06+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMSF017P21+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMFF007A19+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
rJMSF008D21+ GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC
____________________________________________________________
consensus GATTTGAAGCAGAGTTCCCTGGTCATCTCTATCCACTAAAATCCCCAATTCTTCACACTC

. : . : . : . : . : . :
rJMFF031B12+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMFF028C07+ CTTAATTTGTTCATCGCTC
rJMSF003C11+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMSF042L12+ CTTAATTTGTNCATCGCTCANAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMSF009O06+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMSF033L18+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMSF008O06+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMSF017P21+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMFF007A19+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
rJMSF008D21+ CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT
____________________________________________________________
consensus CTTAATTTGTTCATCGCTCAGAACATCGCCGGCTCTGCTCTTTAAATTCTTGTAGTACGT

. : . : . : . : . : . :
rJMFF031B12+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
rJMSF003C11+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
rJMSF042L12+ CGGCGGCGGCGNACGGCATGAACTCNAAACCTCCGATTCCGCTCCGATTCCTCANTTCTC
rJMSF009O06+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
rJMSF033L18+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
rJMSF008O06+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
rJMSF017P21+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
rJMFF007A19+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
rJMSF008D21+ CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC
____________________________________________________________
consensus CGGCGGCGGCG-ACGGCATGAACTCGAAACCTCCGATTCCGCTCCGATTCCTCATTTCTC

. : . : . : . : . : . :
rJMFF031B12+ GCAGTGTTCTGAAGATATCTTTGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT
rJMSF003C11+ GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT
rJMSF042L12+ GCAGTGTTCTGAAGATATCTTCGCTTGCGAGAGCTANATGCTGGAGTCCTGGTCCTTCNA
rJMSF009O06+ GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGT
rJMSF033L18+ GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT
rJMSF008O06+ GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT
rJMSF017P21+ GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT
rJMFF007A19+ GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT
rJMSF008D21+ GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT
____________________________________________________________
consensus GCAGTGTTCTGAAGATATCTTCGCTTGTGAGAGCTAAATGCTGGAGTCCTGGTCCTTCGT

. : . : . : . : . : . :
rJMFF031B12+ TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTTTTCGTCCCGTGAACCGGCTCGTTCA
rJMSF003C11+ TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTTTTCGTCCCGTGAACCGGCTCG
rJMSF042L12+ TGTGCTCCA
rJMSF033L18+ TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTT
rJMSF008O06+ TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTTTTCGTCCCGTGAACCGGC
rJMSF017P21+ TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTTTTCGTCCCGTGAACCGGCTCGTTCA
rJMFF007A19+ TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTTTTCGTCCCGTGAACCGGCTCGTTCA
rJMSF008D21+ TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTTTTCGTCCCGTGAACCGGCTCGTTCA
____________________________________________________________
consensus TGTGCTCCAGATAGGTCTGAATTTGGCTCTTCCTTTTCGTCCCGTGAACCGGCTCGTTCA

. : . : . : . : . : . :
rJMSF017P21+ NGGGGAGAAAAACCGTCTCGTCGTTGTTAGCCAGCACCACTGAGTTCAGGCCGCTCTCG
rJMSF008D21+ AGGGGAGAAGAACCGTCTCGTCGTTGTTAGCCAGCACCACTGAGTTCAGGCCGCTCTCGG
____________________________________________________________
consensus AGGGGAGAAAAACCGTCTCGTCGTTGTTAGCCAGCACCACTGAGTTCAGGCCGCTCTCGG

. : . : . : . : . : . :
rJMSF008D21+ CGGTGCCG
____________________________________________________________
consensus CGGTGCCG