Alignment Contig 4039

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF026M10+ ATATTTGAATAAAGTTCATTAGGGTAAAAAATTTCCTTAGTTACATTTTTTTTTCCTGAC
rJMFF004L18+ ATTTCCTTAGTTACATTTTTTTTTCCTGAC
rJMSF017J17+ TTTTTTTTCCTGAC
rJMSF047K03+ TTTTTTTTCCTGAC
____________________________________________________________
consensus ATATTTGAATAAAGTTCATTAGGGTAAAAAATTTCCTTAGTTACATTTTTTTTTCCTGAC

. : . : . : . : . : . :
rJMFF026M10+ TAGCAAATAATTGAAAATCTAACATTCTAGCATAGCTATTAGCCAAAGCCTTTCTTCTCA
rJMFF004L18+ TAGCAAATAATTGAAAATCTAACATTCTAGCATAGCTATTAGCCAAAGCCTTTCTTCTCA
rJMSF017J17+ TAGCAAATAATTGAAAATCTAACATTCTAGCATAGCTATTAGCCAAAGCCTTTCTTCTCA
rJMSF036B16+ ATAATTGAAAATCTAACATTCTAGCATAGCTATTAGCCAAAGCCTTTCTTCTCA
rJMSF047K03+ TAGCAAATAATTGAAAATCTAACATTCTAGCATAGCTATTAGCCAAAGCCTTTCTTCTCA
____________________________________________________________
consensus TAGCAAATAATTGAAAATCTAACATTCTAGCATAGCTATTAGCCAAAGCCTTTCTTCTCA

. : . : . : . : . : . :
rJMFF026M10+ AAACAGGTGCAAAAATATTTGGAATCACAGAGTATTACAAAACCACAGAAAAGCTAAAGA
rJMFF004L18+ AAACAGGTGCAAAAATATTTGGAATCACAGAGTATTACAAAACCACAGAAAAGCTAAAGA
rJMSF017J17+ AAACAGGTGCAAAAATATTTGGAATCACAGAGTATTACAAAACCACAGAAAAGCTAAAGA
rJMSF036B16+ AAACAGGTGCAAAAATATTTGGAATCACAGAGTATTACAAAACCACAGAAAAGCTAAAGA
rJMSF047K03+ AAACAGGTGCAAAAATATTTGGAATCACAGAGTATTACAAAACCACAGAAAAGCTAAAGA
____________________________________________________________
consensus AAACAGGTGCAAAAATATTTGGAATCACAGAGTATTACAAAACCACAGAAAAGCTAAAGA

. : . : . : . : . : . :
rJMFF026M10+ AGAAATTGCACATCAGAGTCCAGCATCAAATTTCCATTGTAGTAGTCATTGCTCCCATCC
rJMFF004L18+ AGAAATTGCACATCAGAGTCCAGCATCAAATTTCCATTGTAGTAGTCATTGCTCCCATCC
rJMSF017J17+ AGAAATTGCACATCAGAGTCCAGCATCAAATTTCCATTGTAGTAGTCATTGCTCCCATCC
rJMSF036B16+ AGAAATTGCACATCAGAGTCCAGCATCAAATTTCCATTGTAGTAGTCATTGCTCCCATCC
rJMSF047K03+ AGAAATTGCACATCAGAGTCCAGCATCAAATTTCCATTGTAGTAGTCATTGCTCCCATCC
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consensus AGAAATTGCACATCAGAGTCCAGCATCAAATTTCCATTGTAGTAGTCATTGCTCCCATCC

. : . : . : . : . : . :
rJMFF026M10+ ACTGTTAGAGTTTTCTGATCATTGTGAGTTCAATACCGCGTGCAATCTCCAGGTGAGGCC
rJMFF004L18+ ACTGTTAGAGTTTTCTGATCATTGTGAGTTCAATACCGCGTGCAATCTCCAGGTGAGGCC
rJMSF017J17+ ACTGTTAGAGTTTTCTGATCATTGTGAGTTCAATACCGCGTGCAATCTCCAGGTGAGGCC
rJMSF036B16+ ACTGTTAGAGTTTTCTGATCATTGTGAGTTCAATACCGCGTGCAATCTCCAGGTGAGGCC
rJMSF047K03+ ACTGTTAGAGTTTTCTGATCATTGTGAGTTCAATACCGCGTGCAATCTCCAGGTGAGGCC
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consensus ACTGTTAGAGTTTTCTGATCATTGTGAGTTCAATACCGCGTGCAATCTCCAGGTGAGGCC

. : . : . : . : . : . :
rJMFF026M10+ AAATTTACCGAACAGTACTTCTAGCATTTGGCTTCGTCACTGCTTCAACAAGTCTATACA
rJMFF004L18+ AAATTTACCGAACAGTACTTCTAGCATTTGGCTTCGTCACTGCTTCAACAAGTCTATACA
rJMSF017J17+ AAATTTACCGAACAGTACTTCTAGCATTTGGCTTCGTCACTGCTTCAACAAGTCTATACA
rJMSF036B16+ AAATTTACCGAACAGTACTTCTAGCATTTGGCTTCGTCACTGCTTCAACAAGTCTATACA
rJMSF047K03+ AAATTTACCGAACAGTACTTCTAGCATTTGGCTTCGTCACTGCTTCAACAAGTCTATACA
____________________________________________________________
consensus AAATTTACCGAACAGTACTTCTAGCATTTGGCTTCGTCACTGCTTCAACAAGTCTATACA

. : . : . : . : . : . :
rJMFF026M10+ TCCATCTGTCTAGCATTCCTGTTAGAGCAAATGTACCACCGAGAACTGCACAAAGTCGAG
rJMFF004L18+ TCCATCTGTCTAGCATTCCTGTTAGAGCAAATGTACCACCGAGAACTGCACAAAGTCGAG
rJMSF017J17+ TCCATCTGTCTAGCATTCCTGTTAGAGCAAATGTACCACCGAGAACTGCACAAAGTCGAG
rJMSF036B16+ TCCATCTGTCTAGCATTCCTGTTAGAGCAAATGTACCACCGAGAACTGCACAAAGTCGAG
rJMSF047K03+ TCCATCTGTCTAGCATTCCTGTTAGAGCAAATGTACCACCGAGAACTGCACAAAGTCGAG
____________________________________________________________
consensus TCCATCTGTCTAGCATTCCTGTTAGAGCAAATGTACCACCGAGAACTGCACAAAGTCGAG

. : . : . : . : . : . :
rJMFF026M10+ TGATGAAGTGAAGAAAACTTCGGCGTTCTTCTTTGATGGTGACAGTAATTGGTGATAAAT
rJMFF004L18+ TGATGAAGTGAAGAAAACTTCGGCGTTCTTCTTTGATGGTGACAGTAATTGGTGATAAAT
rJMSF017J17+ TGATGAAGTGAAGAAAACTTCGGCGTTCTTCTTTGATGGTGACAGTAATTGGTGATAAAT
rJMSF036B16+ TGATGAAGTGAAGAAAACTTCGGCGTTCTTCTTTGATGGTGACAGTAATTGGTGATAAAT
rJMSF047K03+ TGATGAAGTGAAGAAAACTTCGGCGTTCTTCTTTGATGGTGACAGTAATTGGTGATAAAT
____________________________________________________________
consensus TGATGAAGTGAAGAAAACTTCGGCGTTCTTCTTTGATGGTGACAGTAATTGGTGATAAAT

. : . : . : . : . : . :
rJMFF026M10+ CATACAGAAAGTACACAGCTGGCCACGCCCTATCAAACTCATGTATCAGAGAGTAATACT
rJMFF004L18+ CATACAGAAAGTACACAGCTGGCCACGCCCTATCAAACTCATGTATCAGAGAGTAATACT
rJMSF017J17+ CATACAGAAAGTACACAGCTGGCCACGCCCTATCAAACTCATGTATCAGAGAGTAATACT
rJMSF036B16+ CATACAGAAAGTACACAGCTGGCCACGCCCTATCAAACTCATGTATCAGAGAGTAATACT
rJMSF047K03+ CATACAGAAAGTACACAGCTGGCCACGCCCTATCAAACTCATGTATCAGAGAGTAATACT
____________________________________________________________
consensus CATACAGAAAGTACACAGCTGGCCACGCCCTATCAAACTCATGTATCAGAGAGTAATACT

. : . : . : . : . : . :
rJMFF026M10+ CAGAGACAGAGAATTGATTCGTAGGTAAAACTTCCTTTGATAAGTACCTATATTCAGTAG
rJMFF004L18+ CAGAGACAGAGAATTGATTCGTAGGTAAAACTTCCTTTGATAAGTACCTATATTCAGTAG
rJMSF017J17+ CAGAGACAGAGAATTGATTCGTAGGTAAAACTTCCTTTGATAAGTACCTATATTCAGTAG
rJMSF036B16+ CAGAGACAGAGAATTGATTCGTAGGTAAAACTTCCTTTGATAAGTACCTATATTCAGTAG
rJMSF047K03+ CAGAGACAGAGAATTGATTCGTAGGTAAAACTTCCTTTGATAAGTACCTATATTCAGTAG
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consensus CAGAGACAGAGAATTGATTCGTAGGTAAAACTTCCTTTGATAAGTACCTATATTCAGTAG

. : . : . : . : . : . :
rJMFF026M10+ GAACAATCTTTATATAATATTTGAAAGTTCCACTTCCTGCATGCAGAATCCGCTCTGTCC
rJMFF004L18+ GAACAATCTTTATATAATATTTGAAAGTTCCACTTCCTGCATGCAGAATCCGCTCTGTCC
rJMSF017J17+ GAACAATCTTTATATAATATTTGAAAGTTCCACTTCCTGCATGCAGAATCCGCTCTGTCC
rJMSF036B16+ GAACAATCTTTATATAATATTTGAAAGTTCCACTTCCTGCATGCAGAATCCGCTCTGTCC
rJMSF047K03+ GAACAATCTTTATATAATATTTGAAAGTTCCACTTCCTGCATGCAGAATCCGCTCTGTCC
____________________________________________________________
consensus GAACAATCTTTATATAATATTTGAAAGTTCCACTTCCTGCATGCAGAATCCGCTCTGTCC

. : . : . : . : . : . :
rJMFF026M10+ CATCTAGAG
rJMFF004L18+ CATCTAGAGGGTTGTGAATTCCAGGATATTTTGGACCAAATGACAAGTCATGGATGATAT
rJMSF017J17+ CATCTAGAGGGTTGTGAATTCCAGGATATTTTGGACCAAATGACAAGTCATGGATGATAT
rJMSF036B16+ CATCTAGAGGGTTGTGAATTCCAGGATATTTTGGACCAAATGACAAGTCATGGATGATAT
rJMSF047K03+ CATCTAGAGGGTTGTGAATTCCAGGATATTTTGGACCAAATGACAAGTCATGGATGATAT
____________________________________________________________
consensus CATCTAGAGGGTTGTGAATTCCAGGATATTTTGGACCAAATGACAAGTCATGGATGATAT

. : . : . : . : . : . :
rJMFF004L18+ GACTTACATTAACATGACTAGACCCTTGAAATATCATTTGAGCAACNAATATGTTGAGCC
rJMSF017J17+ GACTTACATTAACATGACTAGACCCTTGAAATATCATTTGAGCAACAAATATGTTGAGCC
rJMSF036B16+ GACTTACATTAACATGACTAGACCCTTGAAATATCATTTGAGCAACAAATATGTTGAGCC
rJMSF047K03+ GACTTACATTAACATGACTAGACCCTTGAAATATCATTTGAGCAACAAATATGTTGAGCC
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consensus GACTTACATTAACATGACTAGACCCTTGAAATATCATTTGAGCAACAAATATGTTGAGCC

. : . : . : . : . : . :
rJMFF004L18+ CATG
rJMSF017J17+ CATGGACAGATATATGGAAGTTTCCAGCACCACGTTGAACATCCAAAGTACATACACCCT
rJMSF036B16+ CATGGACAGATATATGGAAGTT
rJMSF047K03+ CATG
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consensus CATGGACAGATATATGGAAGTTTCCAGCACCACGTTGAACATCCAAAGTACATACACCCT

. : . : . : . : . : . :
rJMSF017J17+ GCATCCTTCA
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consensus GCATCCTTCA