Alignment Contig 3961

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF009F05+ TTTCGATTTCACAAACTGCACAAATGAATGAAAACAACAGATCGGAAGGGCCATGCTAGG
rJMFF013K24+ TTTCGATTTCACAAACTGCACAAATGAATGAAAACAACAGATCGGAAGGGCCATGCTAGG
rJMFF035O21+ TTTCGATTTCACAAACTGCACAAATGAATGAAAACAACAGATCGGAAGGGCCATGCTAGG
rJMSF037N22+ AATGAATGAAAACAACAGATCGGAAGGGCCATGCTAGG
rJMSF009P17+ ACAGATCGGAAGGGCCATGCTAGG
JMFS143F10- CGGAAGGGCCATGCTAGG
____________________________________________________________
consensus TTTCGATTTCACAAACTGCACAAATGAATGAAAACAACAGATCGGAAGGGCCATGCTAGG

. : . : . : . : . : . :
rJMFF009F05+ ATAGGATTCCCCGAGTCGCATAACCTATCGCTCTTATAACAACAATAACAATAACAACAA
rJMFF013K24+ ATAGGATTCCCCGAGTCGCATAACCTATCGCTCTTATAACAACAATAACAATAACAACAA
rJMFF035O21+ ATAGGATTCCCCGAGTCGCATAACCTATCGCTCTTATAACAACAATAACAATAACAACAA
rJMSF037N22+ ATAGGATTCCCCGAGTCGCATAACCTATCGCTCTTATAACAACAATAACAATAACAACAA
rJMSF009P17+ ATAGGATTCCCCGAGTCGCATAACCTATCGCTCTTATAACAACAATAACAATAACAACAA
JMFS143F10- ATAGGATTCCCCGAGTCGCATAACCTATCGCTCTTATAACAACAATAACAATAACAACAA
____________________________________________________________
consensus ATAGGATTCCCCGAGTCGCATAACCTATCGCTCTTATAACAACAATAACAATAACAACAA

. : . : . : . : . : . :
rJMFF009F05+ CACAGTGCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGATCAGACACAA
rJMFF013K24+ CACAGTGCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGACCAGACACAA
rJMFF035O21+ CACAGTGCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGACCAGACACAA
rJMSF037N22+ CACAGTGCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGACCAGACACAA
rJMSF009P17+ CACAGTGCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGACCAGACACAA
JMFS143F10- CACAGTGCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGACCAGACACAA
rJMSF034H09+ GCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGACCAGACACAA
____________________________________________________________
consensus CACAGTGCAACTCGTCCAGCATGCATTTCCGGTTTAAAAGAGGAAATGGACCAGACACAA

. : . : . : . : . : . :
rJMFF009F05+ TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT
rJMFF013K24+ TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT
rJMFF035O21+ TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT
rJMSF037N22+ TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT
rJMSF009P17+ TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT
JMFS143F10- TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT
rJMSF034H09+ TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT
____________________________________________________________
consensus TCGCACGACACAATTCACATTTGGAAACACAACACTCTCGAGACTATGCACTTGCCTAGT

. : . : . : . : . : . :
rJMFF009F05+ ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT
rJMFF013K24+ ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT
rJMFF035O21+ ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT
rJMSF037N22+ ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT
rJMSF009P17+ ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT
JMFS143F10- ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT
rJMSF034H09+ ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT
JMFS161B03- GCCCCTTTGGCACCTCTATGTTAACACTAACNTACCTTTCTCACACGCT
____________________________________________________________
consensus ATTTCATAGAGGCCCCTTTGGCACCTCTATGTTAACACTAACCTACCTTTCTCACACGCT

. : . : . : . : . : . :
rJMFF009F05+ AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
rJMFF013K24+ AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
rJMFF035O21+ AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
rJMSF037N22+ AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
rJMSF009P17+ AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
JMFS143F10- AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
rJMSF034H09+ AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
JMFS161B03- AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT
____________________________________________________________
consensus AAACACTTGGTAGTTGGTACAGTCTTTCACTCGATAATAACTTCATTCATCAATCTAGCT

. : . : . : . : . : . :
rJMFF009F05+ AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
rJMFF013K24+ AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
rJMFF035O21+ AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
rJMSF037N22+ AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
rJMSF009P17+ AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
JMFS143F10- AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
rJMSF034H09+ AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
JMFS161B03- AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT
____________________________________________________________
consensus AATGCTATTTTTTTTAGGGTTTTGAGCTTCACACTTTATTCTTCTTTCTGGTATGTAACT

. : . : . : . : . : . :
rJMFF009F05+ TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
rJMFF013K24+ TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
rJMFF035O21+ TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
rJMSF037N22+ TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
rJMSF009P17+ TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
JMFS143F10- TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
rJMSF034H09+ TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
JMFS161B03- TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA
rJMSF036F07+ CGTCAATGCCATTGGGAAGGGGTGCAGA
____________________________________________________________
consensus TGTGGAATATTTTAGCCATTTGATCTCCTTACCGTCAATGCCATTGGGAAGGGGTGCAGA

. : . : . : . : . : . :
rJMFF009F05+ CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
rJMFF013K24+ CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
rJMFF035O21+ CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
rJMSF037N22+ CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
rJMSF009P17+ CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
JMFS143F10- CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
rJMSF034H09+ CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
JMFS161B03- CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
rJMSF036F07+ CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG
____________________________________________________________
consensus CTGCTTCCACGGTCAATCGCTTCACCACATTTGGGCAGGGATCTCCGAAATTAGTATTTG

. : . : . : . : . : . :
rJMFF009F05+ ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
rJMFF013K24+ ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
rJMFF035O21+ ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
rJMSF037N22+ ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
rJMSF009P17+ ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
JMFS143F10- ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
rJMSF034H09+ ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
JMFS161B03- ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
rJMSF036F07+ ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG
____________________________________________________________
consensus ATATTGCTACCGAGCATCTTTGGCGCCCGATACACTTCTTTTCTAAGACGGAGTACGAGG

. : . : . : . : . : . :
rJMFF009F05+ TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGGTTCCCAGGGGAGTTCCAAAGC
rJMFF013K24+ TANAAGCATGGCATGGTCCTTGCTGGAAGCTC
rJMFF035O21+ TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGG
rJMSF037N22+ TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCA
rJMSF009P17+ TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGGTTCCCAGGGGAGTTCCAAAGC
JMFS143F10- TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGGTTCCCA
rJMSF034H09+ TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGGTTCCCAGGGGAGTTCCAAAGC
JMFS161B03- TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGGTTCCCAGGGGAGTTCCAAAGC
rJMSF036F07+ TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGGTTCCCAGGGGAGTTCCAAAGC
____________________________________________________________
consensus TAGAAGCATGGCATGGTCCTTGCTGGAAGCTCCCGCAGGTTCCCAGGGGAGTTCCAAAGC

. : . : . : . : . : . :
rJMFF009F05+ TCGCAAACTTGATGGAGGAAATGGATTGACCGGGACTGCAATGAAGGTGGAGTTTTGGTT
rJMSF009P17+ TCGCAAACTTGATGGAGGAAATGGATTGACCGGGACTGCAATGAAGGTGGAGTTTTGGTT
rJMSF034H09+ TCGCAAACTTGATGGAGGAAATGGATTGACCGGGACTGCAATGAAGGTGGAGTTTTGGTT
JMFS161B03- TCGCAAACTTGATGGAGGAAATGGATTGACCGGGACTGCAATGAAGGTGGAGTTTTGGTT
rJMSF036F07+ TCGCAAACTTGATGGAGGAAATGGATTGACCGGGACTGCAATGAAGGTGGAGTTTTGGTT
____________________________________________________________
consensus TCGCAAACTTGATGGAGGAAATGGATTGACCGGGACTGCAATGAAGGTGGAGTTTTGGTT

. : . : . : . : . : . :
rJMFF009F05+ TGGGCAACTCCTGGGGTTCTACCATAGCTCTCGATCTCCCAATTCC
rJMSF009P17+ TGGGCAACTCCTGGG-TTCTACCATAGCTCTCGATCTCCCAATTCCTAATGTTTGGATGG
rJMSF034H09+ TGGGCAACTCCT
JMFS161B03- TGGGCAACTCCTGGG-TTCTACCATAGCTCTCGATCTACCAATTCCTAATGTTTGGATGG
rJMSF036F07+ TGGGCAACTCCTGGG-TTCTACCATAGCTCTCGATCTCCCAATTCCTAATGTTTGGATGG
____________________________________________________________
consensus TGGGCAACTCCTGGG-TTCTACCATAGCTCTCGATCTCCCAATTCCTAATGTTTGGATGG

. : . : . : . : . : . :
rJMSF009P17+ ATTTCA
JMFS161B03- ATTTCACCGACATCACCACAAACGCTGGACACTGATCTCCTCACAAGAGAAATTCTCGTG
rJMSF036F07+ ATTTCACCGACATCACCACAAACGCTGGACACTGATCTCCTCACAAGAGAAATTCTCGTG
____________________________________________________________
consensus ATTTCACCGACATCACCACAAACGCTGGACACTGATCTCCTCACAAGAGAAATTCTCGTG

. : . : . : . : . : . :
JMFS161B03- GGATCTCCCCCGAGTTCTTCAAAAAGCACCAAAA
rJMSF036F07+ GGATCTCCCCCGAGTTCTTCAAAAAGCACCAAAAGATTTTCTGTCGGTTTCAACAAAGAC
____________________________________________________________
consensus GGATCTCCCCCGAGTTCTTCAAAAAGCACCAAAAGATTTTCTGTCGGTTTCAACAAAGAC

. : . : . : . : . : . :
rJMSF036F07+ CTTGGCACATGGTACCATCGTTGAGTTGGCTGACCACAACCAAGCTGGCACTTTGGAGGC
____________________________________________________________
consensus CTTGGCACATGGTACCATCGTTGAGTTGGCTGACCACAACCAAGCTGGCACTTTGGAGGC

. : . : . : . : . : . :
rJMSF036F07+ TTAAAGGGTCCAGCATAATGGCATCCATTGCAATTACCAGTCGCATAAGCAGTCCAATAC
____________________________________________________________
consensus TTAAAGGGTCCAGCATAATGGCATCCATTGCAATTACCAGTCGCATAAGCAGTCCAATAC

. : . : . : . : . : . :
rJMSF036F07+ CTACCAAGACTCTCACCGTTAATCCATACTTGACCTTTTCCCATGCTACTCATGTCCAAA
____________________________________________________________
consensus CTACCAAGACTCTCACCGTTAATCCATACTTGACCTTTTCCCATGCTACTCATGTCCAAA

. : . : . : . : . : . :
rJMSF036F07+ GCTAAAGGTTCGTCTCCATCAGGTGCGTTGAAACGAGCCTACAAAGTTGACACTTTTATA
____________________________________________________________
consensus GCTAAAGGTTCGTCTCCATCAGGTGCGTTGAAACGAGCCTACAAAGTTGACACTTTTATA

. : . : . : . : . : . :
rJMSF036F07+ CCACAAAATCTCCATTGCTATTGTCTCTATTCTGATAGAATTTGCTTAATTCATACCTTA
____________________________________________________________
consensus CCACAAAATCTCCATTGCTATTGTCTCTATTCTGATAGAATTTGCTTAATTCATACCTTA

. : . : . : . : . : . :
rJMSF036F07+ TGCCATGTTAAGGCTGCTGTTTCTGTGCAATTANCGAACC
____________________________________________________________
consensus TGCCATGTTAAGGCTGCTGTTTCTGTGCAATTANCGAACC