Alignment Contig 3938

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF004E04+ AATAATGAAGTAGCAATACATTGGGAGAAGAATCATTGTTGTACCAAAAGGAAACTTACA
JMFN034B23- AATGAAGTAGCAATACATTGGGAGAAGAATCATTGTTGTACCAAAAGGAAACTTACA
____________________________________________________________
consensus AATAATGAAGTAGCAATACATTGGGAGAAGAATCATTGTTGTACCAAAAGGAAACTTACA

. : . : . : . : . : . :
rJMFF004E04+ AACATTTAGATGAGAAATTTATGTATAATTGAAATTACCATTACACCCCTGCATTTAAGG
JMFN034B23- AACATTTAGATGAGAAATTTATGTATAATTGAAATTACCATTACACCCCTGCATTTAAGG
rJMSF047P10+ AGG
rJMSF011L22+ AGG
JMFN031M24- ATGTATAATTGAAATTACCATTACACCCCTGCATTTAAGG
rJMFF006C07+ AATTACCATTACACCCCTGCATNTAAGG
rJMFF030P17+ AGG
____________________________________________________________
consensus AACATTTAGATGAGAAATTTATGTATAATTGAAATTACCATTACACCCCTGCATTTAAGG

. : . : . : . : . : . :
rJMFF004E04+ TGTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC
rJMFF030G24+ GTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC
JMFN034B23- TGTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC
rJMSF047P10+ TGTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACANTTGCATCCCCCTTTCCTTC
rJMFF017E02+ ATCTACACTTGC-TGCCCCTTTCCTTC
rJMSF011L22+ TGTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC
JMFN031M24- TGTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC
rJMFF006C07+ TGTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC
rJMFF030P17+ TGTTTTCACNTTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC
____________________________________________________________
consensus TGTTTTCACATTATTTGCCACTCCACTTTTCAAATCTACACTTGC-TCCCCCTTTCCTTC

. : . : . : . : . : . :
rJMFF004E04+ TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTTGNACATAAAATT
rJMFF030G24+ TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTTGNACATAAAATT
JMFN034B23- TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTTGTACATAAAATT
rJMSF047P10+ TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTT
rJMFF017E02+ TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTTGNACATAAAATT
rJMSF011L22+ TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTNGNACANAAAATT
JMFN031M24- TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTTGTACATAAAATT
rJMFF006C07+ TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTNACTTTTTGAACANAAAATT
rJMFF030P17+ TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTTGGACATAAAATT
JMFN015C05- ACTTTTTGTACATAAAATT
____________________________________________________________
consensus TCATATTTCTTACTTTATATGATATGCCATTTTTTTTTTTTACTTTTTGTACATAAAATT

. : . : . : . : . : . :
rJMFF004E04+ CTATCTATCCCTATAAAATTCAAAATACNTGAACAGNAATTTTAAATAAANATATTANAT
rJMFF030G24+ CTATCTATCC
JMFN034B23- CTATCTATCCCTATAAGATTCAAAATACATGAACAGTAATTTTAAATAAATATATTATAT
rJMFF017E02+ CTATCTATCCCTATAAAATTCAAAATACNTGAACAGNAATTTTAAATAAATATATNATNT
rJMSF011L22+ CTANCTANCCCTATAANATTCAAAATACANGAACNGNAATTTTAAANAAATATATTANAT
JMFN031M24- CCATCTATCCCTATAAGATTCAAAATACATGAACAGTAATTTTAAATAAATATATTATAT
rJMFF006C07+ CNATCNATCCCNANAAAATTCAAAANACNTGAACAGNAATTTTAAANAAANANATTANAT
rJMFF030P17+ CNATCTATCCCTANAAAATTCAAAANACATGAACAGTAATTTTAAATAAANATATTATAT
JMFN015C05- CTATCTATCCCTATAAGATTCAAAATACATGAACAGTAATTTTAAATAAATATATTATAT
rJMSF040E07+ GTAATTTTAAATAAATATATTATAT
JMFN042G18- ATAAATATATTATAT
____________________________________________________________
consensus CTATCTATCCCTATAAAATTCAAAATACATGAACAGTAATTTTAAATAAATATATTATAT

. : . : . : . : . : . :
rJMFF004E04+ TTGAG-NGGNAAAAATAANTTNTAAAAAAAAAAA
JMFN034B23- TTGAG-TGGGAAAAATAAGTTATAAAAAAAAAAAAGGAAAGAAAGCCAGAAAGGCAGCAC
rJMFF017E02+ TTGAG-GGGGAAAAATA
rJMSF011L22+ TTGAG-GGGGAAAAATAAGTTATAAAAAAAAAA
JMFN031M24- TTGAG-TGGGAAAAATAAGTTATAAAAAAAAAAAAGGAAAGAAAGCCAGAAAGGCAGCAC
rJMFF006C07+ TTGAG-GGGGAAAAATAAGTTNTAAAAAAAAAAA
rJMFF030P17+ TTGAG-GGGGAAAAATAAGTTATAAAAAAAAAAA
JMFN015C05- TTGAG-TGGGAAAAATAAGTTATAAAAAAAAAAA-GGAAAGAAAGCCAGAAAGGCAGCAC
rJMSF040E07+ TTGAGATGGGAAAAATAAGTTATAAAAAAAAAAAAGGAAANAAAGCCAGAAAGGCAGCNC
JMFN042G18- TTGAG-TGGGAAAAATAAGTTATAAAAAAAAAAAAGGAAAGAAAGCCAGAAAGGCAGCAC
JMFF030G24- AAAAAAAAAAGGAAAGAAAGCCAGAAAGGCAGCAC
____________________________________________________________
consensus TTGAG-TGGGAAAAATAAGTTATAAAAAAAAAAAAGGAAAGAAAGCCAGAAAGGCAGCAC

. : . : . : . : . : . :
JMFN034B23- CGCTTGTTGTTGGGCCCCACAGCTTAATCATCGGACTGATGGGTAGGGTGTAATTCCGTT
JMFN031M24- CGCTTGTTGTTGGGCCCCACAGCTTAATCATCGGACTGATGGGTAGGGTGTAATTCCGTT
JMFN015C05- CGCTTGTTGTTGGGCCCCACAGCTTAATCATCGGACTGATGGGTAGGGTGTAATTCCGTT
rJMFF051D21+ TAATTCCTTT
rJMSF040E07+ CGCTTGTTGTTGGGCCCCNCAGCTTAATCATCGGACTGANGGGNAGGGGGTAATTCCGTT
JMFN042G18- CGCTTGTTGTTGGGCCCCACAGCTTAATCATCGGACTGATGGGTAGGGTGTAATTCCGTT
JMFF030G24- CGCTTGTTGTTGGGCCCCACAGCTTAATCATCGGACTGATGGGTAGGGTGTAATTCCGTT
____________________________________________________________
consensus CGCTTGTTGTTGGGCCCCACAGCTTAATCATCGGACTGATGGGTAGGGTGTAATTCCGTT

. : . : . : . : . : . :
JMFN034B23- TTTACCCTTGATTGTATCCCGTAATAACTAACGTACCACTTGACGAATTTTCTTAACCCG
JMFN031M24- TTTACCCTTGATTGTATCCCGTAATAACTAACGTACCACTTGACGAATTTTCTTAACCCG
JMFN015C05- TTTACCCTTGATTGTATCCCGTAATAACTAACGTACCACTTGACGAATTTTCTTAACCCG
rJMFF051D21+ TTTACCCTTGATTGAATACCGTAATAACTAACGTACCACTTGACGAACTTTCTCAATCCA
rJMSF040E07+ TTTACCCTTGATTGNATCCCGNAANAACTAACGTACCACTTGACNAATTTTCTTAACCCG
JMFN042G18- TTTACCCTTGATTGTATCCCGTAATAACTAACGTACCACTTGACGAATTTTCTTAACCCG
JMFF030G24- TTTACCCTTGATTGTATCCCGTAATAACTAACGTACCACTTGACGAATTTTCTTAACCCG
____________________________________________________________
consensus TTTACCCTTGATTGTATCCCGTAATAACTAACGTACCACTTGACGAATTTTCTTAACCCG

. : . : . : . : . : . :
JMFN034B23- GATGAAAGATCCGTGGTGGGTTTGTACCCGAAGTCCTTGTACGCCAGGCTCACGTTAGCA
JMFN031M24- GATGAAAGATCCGTGGTGGGTTTGTACCCGAAGTCCTTGTACGCCAGGCTCACGTTAGCA
JMFN015C05- GATGAAAGATCCGTGGTGGGTTTGTACCCGAAGTCCTTGTACGCCAGGCTCACGTTAGCA
rJMFF051D21+ CTTGACAAGTCCGTGGTTGGTTTGTAGCCGAAGTCCCTGTAGGCAAGGCTCACGTTAGCG
rJMSF040E07+ GATGAAANATCCGNGGGGGGTTTGTACCCNAAGTCCTTGTACNCCAGGCTCACGTTAGCA
JMFN042G18- GATGAAAGATCCGTGGTGGGTTTGTACCCGAAGTCCTTGTACGCCAGGCTCACGTTAGCA
JMFF030G24- GATGAAAGATCCGTGGTGGGTTTGTACCCGAAGTCCTTGTACGCCAGGCTCACGTTAGCA
____________________________________________________________
consensus GATGAAAGATCCGTGGTGGGTTTGTACCCGAAGTCCTTGTACGCCAGGCTCACGTTAGCA

. : . : . : . : . : . :
JMFN034B23- TGGGTGAACGGAACGTCGCCGTTTCGGGGCATCTTGACCACGTTCTTTTTAGCCTTGATG
JMFN031M24- TGGGTGAACGGAACGTCGCCGTTTCGGGGCATCTTGACCACGTTCTTTTTAGCCTTGATG
JMFN015C05- TGGGTGAACGGAACGTCGCCGTTTCGGGGCATCTTGACCACGTTCTTTTTAGCCTTGATG
rJMFF051D21+ TGGGTGTACGGAACGTCGCCGTTTCGGGGCATCTTTACAACGTTCTTTTTAGCCTTGATG
rJMSF040E07+ NGGGNGAACGGAACGTCNCCGTTTCGGGGCATCTTGACCACGTTCTTTTTANCCTTGATG
JMFN042G18- TGGGTGAACGGAACGTCGCCGTTTCGGGGCATCTTGACCACGTTCTTTTTAGCCTTGATG
rJMFF020L18+ AACGGAACGTCNCCGTTTCGGGGNATCTTGACCACGTTCTTTTTACCCTTGATG
JMFF030G24- TGGGTGAACGGAACGTCGCCGTTTCGGGGCATCTTGACCACGTTCTTTTTAGCCTTGATG
____________________________________________________________
consensus TGGGTGAACGGAACGTCGCCGTTTCGGGGCATCTTGACCACGTTCTTTTTAGCCTTGATG

. : . : . : . : . : . :
JMFN034B23- CTCAACAGATTTTCAAGAATCGACACCAG
JMFN031M24- CTCAACAGATTTTCAAGAATCGACACCAGCTTCCTCACCGA
JMFN015C05- CTCAACAGATTTTCAAGAATCGACACCAGCTTCCTCACCGACACCGGCGACGTGTTCCCC
rJMFF051D21+ TTGAGCAAATTTTCTAGAATTGCCACTAGCTTCCTCACCGACACTGGCGACGTGTTACCC
rJMSF040E07+ CTCAACANATTTTCAAGAATCGACACCAGCTTCCTCACCGACNCCGGCNACGTGTTCCCC
JMFN042G18- CTCAACAGATTTTCAAGAATCGACACCAGCTTCCTCACCGACACCGGCGACGTGTTCCCC
rJMFF020L18+ NTCAACAAATTTTCAAAAATCAACACCAGNTTCCTCACCNACACCGGCNACGNGTTCCCC
JMFF030G24- CTCAACAGATTTTCAAGAATCGACACCAGCTTCCTCACCGACACCGGCGACGTGTTCCCC
____________________________________________________________
consensus CTCAACAGATTTTCAAGAATCGACACCAGCTTCCTCACCGACACCGGCGACGTGTTCCCC

. : . : . : . : . : . :
JMFN015C05- AGGTTGTACACCCTCAACTGCGCCGGCCCTTTCTTCTTCCCGCCGCTGCCGGTGCTCTTC
rJMFF051D21+ AGGTTGTACACCCTCAACTGCGCCGGCCCCTTCTTCTT
rJMSF040E07+ AGGTTGNACACCCTCAACTGCGCCGGCCCTTTCTTCTTCCCGCCGCTGCCGGNGCTCTTC
JMFN042G18- AGGTTGTACACCCTCAACTGCGCCGGCCCTTTCTTCTTCCCGCCGCTGCCGGTGCTCTTC
rJMFF020L18+ AGGTTGNACACCCTCAANTGNGCCGGCCCTTTNTTNTTCCCNCCGNTGCCGGGGCTCTTC
JMFF030G24- AGGTTGTACACCCTCAACTGCGCCGGCCCTTTCTTCTTCCCGCCGCTGCCGGTGCTCTTC
____________________________________________________________
consensus AGGTTGTACACCCTCAACTGCGCCGGCCCTTTCTTCTTCCCGCCGCTGCCGGTGCTCTTC

. : . : . : . : . : . :
JMFN015C05- TCCGCCGTGTCCAGCGCC
rJMSF040E07+ TCCGCCGNGTCCAGCGCCCCCACGCACCCCTTCACNACGTCGTCAATGTACGTGAAGTCA
JMFN042G18- TCCGCCGTGTCCAGCGCCCCCACGCACCCCTTCACGACGTCGTCGATGTACGTGAAGTCA
rJMFF020L18+ TCCGCNGGGTCNAGNGCCCCCACG
JMFF030G24- TCCGCCGTGTCCAGCGCCCCCACGCACCCCTTCACGACGTCGTCGATGTACGTGAAGTCA
____________________________________________________________
consensus TCCGCCGTGTCCAGCGCCCCCACGCACCCCTTCACGACGTCGTCGATGTACGTGAAGTCA

. : . : . : . : . : . :
rJMSF040E07+ CGCGCCACCTCCTTGTCCTCCTGCGNGACGNANACGTTNATCGGCTTCCCCNGGAGCANG
JMFN042G18- CGCGCCACCTCCTTGTCCTCCTGCGTGACGTACACGTTGATCGGCTTCCCCTGGAGCA
JMFF030G24- CGCGCCACCTCCTTGTCCTCCTGCGTGACGTACACGTTGATCGGCTTCCCCTGGAGCA
____________________________________________________________
consensus CGCGCCACCTCCTTGTCCTCCTGCGTGACGTACACGTTGATCGGCTTCCCCTGGAGCANG

. : . : . : . : . : . :
rJMSF040E07+ NCCTTGGNGAAAAAAAAANACCCCANGTCGGGCCGGCCCCAGGGCCCGNAAACGGNGAAA
____________________________________________________________
consensus NCCTTGGNGAAAAAAAAANACCCCANGTCGGGCCGGCCCCAGGGCCCGNAAACGGNGAAA

. : . : . : . : . : . :
rJMSF040E07+ AATCNCANCCCGGTTAGGGANAGGCCGAAAATGTGGTTANAANNGTGCGCGATTTCCTCG
____________________________________________________________
consensus AATCNCANCCCGGTTAGGGANAGGCCGAAAATGTGGTTANAANNGTGCGCGATTTCCTCG

. : . : . : . : . : . :
rJMSF040E07+ CCGGCTTTTTTGGTGNCGGCGTAAAGGCNGGCGGGTTGATCGGTGCGGNGGTTTTCCNAA
____________________________________________________________
consensus CCGGCTTTTTTGGTGNCGGCGTAAAGGCNGGCGGGTTGATCGGTGCGGNGGTTTTCCNAA

. : . : . : . : . : . :
rJMSF040E07+ AACGGGACTTTA
____________________________________________________________
consensus AACGGGACTTTA