Alignment Contig 3930

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF002D16+ TATTTTATTTATTTGAAAGAGAGAGTAAACAACATTGAAGTGTACAATTTACAATTTATA
rJMFF015C21+ TTTATTTGAAAGAGAGAGTAAACAACATTGAAGTGTACAATTTACAATTTATA
rJMFF003C03+ TTACAATTTATA
rJMFF014L14+ TTTTATTTATTTGAAAGAGAGAGTAAACAACATTGAAGTGTACAATTTT--ATTTATA
rJMSF010F22+ AACAGCATTGAAGTGTACAATTTACAATTTATA
rJMFF021B11+ TTTTATTTATTTGAAAGAGAGAGTAAACAACATTGAAGTGTACAATTTACAATTTATA
rJMFF016P06+ TTTTATTTATTTGAAAGAGAGAGTAAACAACATTGAAGTGTACAATTTACAATTTATA
rJMSF028G05+ AACAACATTGAAGTGTACAATTTACAATTTATA
____________________________________________________________
consensus TATTTTATTTATTTGAAAGAGAGAGTAAACAACATTGAAGTGTACAATTTACAATTTATA

. : . : . : . : . : . :
rJMFF002D16+ ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
rJMFF015C21+ ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
rJMFF003C03+ ACTGAGTANCGNATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
rJMFF014L14+ ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
rJMSF018N15+ CTGAGTAGCGGATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGNA
rJMSF010F22+ ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
rJMFF021B11+ ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
rJMFF016P06+ ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
rJMSF028G05+ ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA
____________________________________________________________
consensus ACTGAGTAGCGTATGAACAGATCTTCCTCTCCCAGTTGTATAACCTATCTCTGATCAGCA

. : . : . : . : . : . :
rJMFF002D16+ GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
rJMFF015C21+ GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
rJMFF003C03+ GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
rJMFF014L14+ GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
rJMSF018N15+ GCACAACCTCNCAAAGAAAACACTTTANCAAGCAGACTGATATATCTTGCTCNCCCTCCA
rJMSF010F22+ GCACAACCTCTCAAAGAAAACTCTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
rJMFF021B11+ GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
rJMFF016P06+ GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
rJMSF028G05+ GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA
____________________________________________________________
consensus GCACAACCTCTCAAAGAAAACACTTTAGCAAGCAGACTG-TATATCTTGCTCTCCCTCCA

. : . : . : . : . : . :
rJMFF002D16+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
rJMFF015C21+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
rJMFF003C03+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
rJMFF014L14+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
rJMSF018N15+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGNACATATCCAAGNTTG
rJMSF010F22+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
rJMFF021B11+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
rJMFF016P06+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
rJMSF028G05+ AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG
____________________________________________________________
consensus AAATGAGGGATGGATAGGTACAGTAAACCATGTACATTCCCATGCACATATCCAAA-TTG

. : . : . : . : . : . :
rJMFF002D16+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
rJMFF015C21+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
rJMFF003C03+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
rJMFF014L14+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
rJMSF018N15+ CTCAACANAGAACAAACCGAATATCGCATGCACATTGCAACACGANACANNTATTTTTGN
rJMSF010F22+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
rJMFF021B11+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
rJMFF016P06+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
rJMSF028G05+ CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT
____________________________________________________________
consensus CTCAACACAGAACAAACCGAATATCGCATGCACATTGCAACACGACACAAATATTTTTGT

. : . : . : . : . : . :
rJMFF002D16+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
rJMFF015C21+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
rJMFF003C03+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
rJMFF014L14+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
rJMSF018N15+ TTCTTTCNTGGTTTCATCTACGACGCCNATNAGTGACCAAGTCNGGGGTGNCTTTCCTCN
rJMSF010F22+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
rJMFF021B11+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
rJMFF016P06+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
rJMSF028G05+ TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA
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consensus TTCTTTCATGGTTTCATCTACGACGCCTATTAGTGACCAAGTCAGGGGTGCCTTTCCTCA

. : . : . : . : . : . :
rJMFF002D16+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
rJMFF015C21+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
rJMFF003C03+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
rJMFF014L14+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
rJMSF018N15+ TCATCGCCACAAATTCNTCATAATTGATTTTCCCATCGTNATCTGTGNCAACTTCTGCAA
rJMSF010F22+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
rJMFF021B11+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
rJMFF016P06+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
rJMSF028G05+ TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA
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consensus TCATCGCCACAAATTCATCATAATTGATTTTCCCATCGTTATCTGTGTCAACTTCTGCAA

. : . : . : . : . : . :
rJMFF002D16+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
rJMFF015C21+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
rJMFF003C03+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCANGGAATGCTCCAATT
rJMFF014L14+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
rJMSF018N15+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
rJMSF010F22+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
rJMFF021B11+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
rJMFF016P06+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
rJMSF028G05+ TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT
____________________________________________________________
consensus TGATCTCCTTTATTGTCTTTTCATCGGTAATGTTGTATTTCTTCAGGGAATGCTCCAATT

. : . : . : . : . : . :
rJMFF002D16+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
rJMFF015C21+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
rJMFF003C03+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
rJMFF014L14+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
rJMSF018N15+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCANAATACTCAAAAGCCTTGTACAAGT
rJMSF010F22+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
rJMFF021B11+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
rJMFF016P06+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
rJMSF028G05+ CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT
____________________________________________________________
consensus CTTCCATAGTAATATACCCGCTCTTGTCCTTGTCAAAATACTCAAAAGCCTTGTACAAGT

. : . : . : . : . : . :
rJMFF002D16+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA
rJMFF015C21+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA
rJMFF003C03+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGNANCTGTGATGAACTCAAGATAA
rJMFF014L14+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA
rJMSF018N15+ GGTCTTCTCTTTCCACACGGNTCATATGCGTCGTAGCTGTGATGAACTCAAGANAATCAA
rJMSF010F22+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA
rJMFF021B11+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA
rJMFF016P06+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA
rJMSF028G05+ GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA
____________________________________________________________
consensus GGTCTTCTCTTTCCACACGGTTCATATGCATCGTAGCTGTGATGAACTCAAGATAATCAA

. : . : . : . : . : . :
rJMFF002D16+ TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGAGA
rJMFF015C21+ TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGA
rJMFF014L14+ TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGAGA
rJMSF018N15+ TAGTTCCGTTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGANA
rJMSF010F22+ TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGAGA
rJMFF021B11+ TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGAGA
rJMFF016P06+ TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGAGA
rJMSF028G05+ TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGAGA
____________________________________________________________
consensus TAGTTCCATTTCCATCAACATCAGCCGCTTCCATCAATTGCCTAACTTCTGACTCTGAGA

. : . : . : . : . : . :
rJMFF002D16+ GCTTGGTGCCCATTTTTGTAAGACCAGCTTTCAGTTCTTCATAAGTAATTGTGCCACTGT
rJMFF014L14+ GCTTGGTGCCCATTTTTGTAAGACCAGCTTTCAGTTCTTCATAAG
rJMSF018N15+ GCTTGGTGCC
rJMSF010F22+ GCTTGGTGCCCATTTTTGTAAGACCAGCTTTCAGTTCTTCATAAGTAATTGTGCCACTGT
rJMFF021B11+ GCTTGGTGCCCATTTTTGTAAGAACAGCTTTCAGTTCTTCATAAGTAATTGTGCCACTGT
rJMFF016P06+ GCTTGGTGCCCATTTTTGTAAGACCAGCTTTCAGTTCTTCATAAGTAATTGTGCCACTGT
rJMSF028G05+ GCTTGGTGCCCATTTTTGTAAGACCAGCTTTCAGTTCTTCATAAGTAATTGTGCCACTGT
____________________________________________________________
consensus GCTTGGTGCCCATTTTTGTAAGACCAGCTTTCAGTTCTTCATAAGTAATTGTGCCACTGT

. : . : . : . : . : . :
rJMFF002D16+ CATCTGTGTCTATTGATTTGAACATTTCCTTCAAACCAA
rJMSF010F22+ CATCTGTGTCTATTGATTTGAACATTT
rJMFF021B11+ CATCTGTGTCTATTGATTTGAACATTTCCTTCAAACCAA
rJMFF016P06+ CATCTGTGTCTATTGATTTGAACATTTCCTTCAAACCAA-TAATTTCTTCTTCAGAAAGA
rJMSF028G05+ CATCTGTGTCTATTGATTTGAACATTTCCTTCAAACCAAATAATTTCTTCTTCAGAAAGA
____________________________________________________________
consensus CATCTGTGTCTATTGATTTGAACATTTCCTTCAAACCAAATAATTTCTTCTTCAGAAAGA

. : . : . : . : . : . :
rJMFF016P06+ TTTTCAGCAATTACCTTAAGAGCTACTTTCTTGAGCTTGNT
rJMSF028G05+ TTTTCAGCAATTACCTTAAGAGCTACTTTCTTGAGC
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consensus TTTTCAGCAATTACCTTAAGAGCTACTTTCTTGAGCTTGNT