Alignment Contig 3828

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF041E03+ TGGGATATGATTGAAAAGTCAAACTTCCCCCAAATTTTTAGGGTTTGAGGGAGATTAGCT
JMSF020O10+ AGGGTTTGAGGGAGATTAGCT
JMSF017I18+ GAGGGAGATTAGCT
JMSF020H21+ GAGGGAGATTAGCT
____________________________________________________________
consensus TGGGATATGATTGAAAAGTCAAACTTCCCCCAAATTTTTAGGGTTTGAGGGAGATTAGCT

. : . : . : . : . : . :
JMSF041E03+ CAAAGCTCCCAGAACTTTCACCTGATCAGTTTTTCTGCCCGGTGTTACCCACACCTGGAC
JMSF020O10+ CAAAGCTCCCAGAACTTTCACCTGATCAGTTTTTCTGCCCGGTGTTACCCACACCTGGAC
JMSF017I18+ CAAAGCTCCCAGAACTTTCACCTGATCAGTTTTTCTGCCCGGTGTTACCCACACCTGGAC
JMSF020H21+ CAAAGCTCCCAGAACTTTCACCTGATCAGTTTTTCTGCCCGGTGTTACCCACACCTGGAC
____________________________________________________________
consensus CAAAGCTCCCAGAACTTTCACCTGATCAGTTTTTCTGCCCGGTGTTACCCACACCTGGAC

. : . : . : . : . : . :
JMSF041E03+ TTCGCCGTCTCTACGATCAACACCATCGTTCCGCCATAGCTATCGAGCGAGAGAGCTATT
JMSF020O10+ TTCGCCGTCTCTACGATCAACACCATCGTTCCGCCATAGCTATCGAGCGAGAGAGCTATT
JMSF017I18+ TTCGCCGTCTCTACGATCAACACCATCGTTCCGCCATAGCTATCGAGCGAGAGAGCTATT
JMSF020H21+ TTCGCCGTCTCTACGATCAACACCATCGTTCCGCCATAGCTATCGAGCGAGAGAGCTATT
____________________________________________________________
consensus TTCGCCGTCTCTACGATCAACACCATCGTTCCGCCATAGCTATCGAGCGAGAGAGCTATT

. : . : . : . : . : . :
JMSF041E03+ GCTTTGGCGGGAAAAAAGGGCGGCAGGCTCGTCGGTTGCCGCTAACCGACGATCGAGAGA
JMSF020O10+ GCTTTGGCGGGAAAAAAGGGCGGCAGGCTCGTCGGTTGCCGCTAACCGACGATCGAGAGA
JMSF017I18+ GCTTTGGCGGGAAAAAAGGGCGGCAGGCTCGTCGGTTGCCGCTAACCGACGATCGAGAGA
JMSF020H21+ GCTTTGGCGGGAAAAAAGGGCGGCAGGCTCGTCGGTTGCCGCTAACCGACGATCGAGAGA
____________________________________________________________
consensus GCTTTGGCGGGAAAAAAGGGCGGCAGGCTCGTCGGTTGCCGCTAACCGACGATCGAGAGA

. : . : . : . : . : . :
JMSF041E03+ TTCGTGATAGTGAATCGACGAACTCAATACTTTGGCTTTGATTATTGGCGTTCTCTTTTG
JMSF020O10+ TTCGTGATAGTGAATCGACGAACTCAATACTTTGGCTTTGATTATTGGCGTTCTCTTTTG
JMSF017I18+ TTCGTGATAGTGAATCGACGAACTCAATACTTTGGCTTTGATTATTGGCGTTCTCTTTTG
JMSF020H21+ TTCGTGATAGTGAATCGACGAACTCAATACTTTGGCTTTGATTATTGGCGTTCTCTTTTG
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consensus TTCGTGATAGTGAATCGACGAACTCAATACTTTGGCTTTGATTATTGGCGTTCTCTTTTG

. : . : . : . : . : . :
JMSF041E03+ ATCTCTTTCTTCATTCGCAAAGGTGTCTGGATTTCGTAATTTGAGGTGTATTAGTGCAGG
JMSF020O10+ ATCTCTTTCTTCATTCGCAAAGGTGTCTGGATTTCGTAATTTGAGGTGTATTAGTGCAGG
JMSF017I18+ ATCTCTTTCTTCATTCGCAAAGGTGTCTGGATTTCGTAATTTGAGGTGTATTAGTGCAGG
JMSF020H21+ ATCTCTTTCTTCATTCGCAAAGGTGTCTGGATTTCGTAATTTGAGGTGTATTAGTGCAGG
____________________________________________________________
consensus ATCTCTTTCTTCATTCGCAAAGGTGTCTGGATTTCGTAATTTGAGGTGTATTAGTGCAGG

. : . : . : . : . : . :
JMSF041E03+ CTGTTCAGCAAACTGATTTTCTACTGGTCAGTAAATGTAGTTAGAGTTATGATATCTTCT
JMSF020O10+ CTGTTCAGCAAACTGATTTTCTACTGGTCAGTAAATGTAGTTAGAGTTATGATATCTTCT
JMSF017I18+ CTGTTCAGCAAACTGATTTTCTACTGGTCAGTAAATGTAGTTAGAGTTATGATATCTTCT
JMSF020H21+ CTGTTCAGCAAACTGATTTTCTACTGGTCAGTAAATGTAGTTAGAGTTATGATATCTTCT
____________________________________________________________
consensus CTGTTCAGCAAACTGATTTTCTACTGGTCAGTAAATGTAGTTAGAGTTATGATATCTTCT

. : . : . : . : . : . :
JMSF041E03+ TTTGCTTGTTGGGTTGGTGGTTCTGTTTCCATGTGTCCACATATAGTTGGGTGCAAAGGA
JMSF020O10+ TTTGCTTGTTGGGTTGGTGGTTCTGTTTCCATGTGTCCACATATAGTTGGGTGCAAAGGA
JMSF017I18+ TTTGCTTGTTGGGTTGGTGGTTCTGTTTCCATGTGTCCACATATAGTTGGGTGCAAAGGA
JMSF020H21+ TTTGCTTGTTGGGTTGGTGGTTCTGTTTCCATGTGTCCACATATAGTTGGGTGCAAAGGA
____________________________________________________________
consensus TTTGCTTGTTGGGTTGGTGGTTCTGTTTCCATGTGTCCACATATAGTTGGGTGCAAAGGA

. : . : . : . : . : . :
JMSF041E03+ ACCTATATTTTTTGAAGAGCCAATATGCCGTTTAAAAACCTGTTGATAGTACGGAGTGCA
JMSF020O10+ ACCTATATTTTTTGAAGAGCCAATATGCCGTTTAAAAACCTGTTGATAGTACGGAGTGCA
JMSF017I18+ ACCTATATTTTTTGAA
JMSF020H21+ ACCTATATTTTTTGAAGAGCCAATATGCCGTTTAAAAACCTGTTGATAGTACGGAGTGCA
____________________________________________________________
consensus ACCTATATTTTTTGAAGAGCCAATATGCCGTTTAAAAACCTGTTGATAGTACGGAGTGCA

. : . : . : . : . : . :
JMSF041E03+ AAAAAGCATGGATTTGAAAGATTGATTTTTGGCTGTCAAAGTGGGTGTCAGGAGTCGGTG
JMSF020O10+ AAAAAGCATGGATTTGAAAGATTGATTTTTGGCTGTCAAAGTGGGTGTCAGGAGTCGGTG
JMSF020H21+ AAAAAGCATGGATTTGAAAGATTGATTTTTGGCTGTCAAAGTGGGTGTCAGGAGTCGGTG
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consensus AAAAAGCATGGATTTGAAAGATTGATTTTTGGCTGTCAAAGTGGGTGTCAGGAGTCGGTG

. : . : . : . : . : . :
JMSF041E03+ GAGATTTTGGTTGCTCAGGGTAGATTGTTGTTATCAGGCCATTCAAAGCTGTTCCATTCA
JMSF020O10+ GAGATTTTGGTTGCTCAGGGTAGATTGTTGTTATCAGGCCATTCAAAGCTGTCCCATTCA
JMSF020H21+ GAGATTTTGGTTGCTCAGGGTAGATTGTTGTTATCAGGCCATTCAAAGCTGTTCCATTCA
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consensus GAGATTTTGGTTGCTCAGGGTAGATTGTTGTTATCAGGCCATTCAAAGCTGTTCCATTCA

. : . : . : . : . : . :
JMSF041E03+ CTGCCATCTGCATCACTTGCTGGTGTGCATGATTTTGTTCGACCTGGAACTTTAGCTGCT
JMSF020O10+ CTGCCATCTGCATCACTTGCTGGTGTGCATGATTTTGTTCGACCTGG
JMSF020H21+ CTGCCATCTGCATCACTTGCTGGTGTGCATGATTTTGTTCGACCTGGAACTTTAGCTGCT
____________________________________________________________
consensus CTGCCATCTGCATCACTTGCTGGTGTGCATGATTTTGTTCGACCTGGAACTTTAGCTGCT

. : . : . : . : . : . :
JMSF041E03+ GCTCAGGCGAATCTACATACAGTTAATCGAAGGAAGAATCTTTCAGTTGTTGGCGCATTT
JMSF020H21+ GCTCAGGCGAATCTACATACAGTTAATCG
____________________________________________________________
consensus GCTCAGGCGAATCTACATACAGTTAATCGAAGGAAGAATCTTTCAGTTGTTGGCGCATTT

. : . : . : . : . : . :
JMSF041E03+ TCTCGTGCAATTTCTATTCCATCANTGTCAGGGC
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consensus TCTCGTGCAATTTCTATTCCATCANTGTCAGGGC