Alignment Contig 3777

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF035M21+ GAAGGTTTAAGCGGGTTGGTTTTATCTTCTTCTCCGTCTGTCTCTGTGGCTTGCTTGCTT
JMFF012A20+ TCTCTGTGGCTTGCTTGCTT
JMFF039A14+ TCTCTGTGGCTTGCTTGCTT
JMFF050I01+ TCTCTGTGGCTTGCTTGCTT
____________________________________________________________
consensus GAAGGTTTAAGCGGGTTGGTTTTATCTTCTTCTCCGTCTGTCTCTGTGGCTTGCTTGCTT

. : . : . : . : . : . :
JMSF035M21+ GCTTCCCTCCCTCGCTCTTCAGCCATGCCTGAAGCTTCTACCATCTTCCAATCCACTCTC
JMFF012A20+ GCTTCCCTCCCTCGCTCTTCAGCCATGCCTGAAGCTTCTACCATCTTCCAATCCACTCTC
JMFF039A14+ GCTTCCCTCCCTCGCTCTTCAGCCATGCCTGAAGCTTCTACCATCTTCCAATCCACTCTC
JMFF050I01+ GCTTCCCTCCCTCGCTCTTCAGCCATGCCTGAAGCTTCTACCATCTTCCAATCCACTCTC
____________________________________________________________
consensus GCTTCCCTCCCTCGCTCTTCAGCCATGCCTGAAGCTTCTACCATCTTCCAATCCACTCTC

. : . : . : . : . : . :
JMSF035M21+ CTCCCTCCTTTCTCTCAGTCTCGCAGAGCCCTTTCCAGTCCGATCTGTCACACATTCTTC
JMFF012A20+ CTCCCTCCTTTCTCTCAGTCTCGCAGAGCCCTTTCCAGTCCGATCTGTCACACATTCTTC
JMFF039A14+ CTCCCTCCTTTCTCTCAGTCTCGCAGAGCCCTTTCCAGTCCGATCTGTCACACATTCTTC
JMFF050I01+ CTCCCTCCTTTCTCTCAGTCTCGCAGAGCCCTTTCCAGTCCGATCTGTCACACATTCTTC
____________________________________________________________
consensus CTCCCTCCTTTCTCTCAGTCTCGCAGAGCCCTTTCCAGTCCGATCTGTCACACATTCTTC

. : . : . : . : . : . :
JMSF035M21+ AGAAGGAACCCAACAAGTTTCACCACCATACGGTGTTCCTCAGTTTCCACCGAGGCCGCA
JMFF012A20+ AGAAGGAACCCAACAAGTTTCACCACCATACGGTGTTCCTCAGTTTCCACCGAGGCCGCA
JMFF039A14+ AGAAGGAACCCAACAAGTTTCACCACCATACGGTGTTCCTCAGTTTCCACCGAGGCCGCA
JMFF050I01+ AGAAGGAACCCAACAAGTTTCACCACCATACGGTGTTCCTCAGTTTCCACCGAGGCCGCA
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consensus AGAAGGAACCCAACAAGTTTCACCACCATACGGTGTTCCTCAGTTTCCACCGAGGCCGCA

. : . : . : . : . : . :
JMSF035M21+ AAAATCCAGACAGTCCCTTGGGGTTGTGATACCGACTCCCTCGACAACGCGTCGGCTTTG
JMFF012A20+ AAAATCCAGACAGTCCCTTGGGGTTGTGATACCGACTCCCTCGACAACGCGTCGGCTTTG
JMFF039A14+ AAAATCCAGACAGTCCCTTGGGGTTGTGATACCGACTCCCTCGACAACGCGTCGGCTTTG
JMFF050I01+ AAAATCCAGACAGTCCCTTGGGGTTGTGATACCGACTCCCTCGACAACGCGTCGGCTTTG
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consensus AAAATCCAGACAGTCCCTTGGGGTTGTGATACCGACTCCCTCGACAACGCGTCGGCTTTG

. : . : . : . : . : . :
JMSF035M21+ CAGAAATGGCTGTCGGACTCGGGTATGCCTCCTCAGAAAATGGCCATACAGAGAGTGGAT
JMFF012A20+ CAGAAATGGCTGTCGGACTCGGGTATGCCTCCTCAGAAAATGGCCATACAGAGAGTGGAT
JMFF039A14+ CAGAAATGGCTGTCGGACTCGGGTATGCCTCCTCAGAAAATGGCCATACAGAGAGTGGAT
JMFF050I01+ CAGAAATGGCTGTCGGACTCGGGTATGCCTCCTCAGAAAATGGCCATACAGAGAGTGGAT
____________________________________________________________
consensus CAGAAATGGCTGTCGGACTCGGGTATGCCTCCTCAGAAAATGGCCATACAGAGAGTGGAT

. : . : . : . : . : . :
JMSF035M21+ ATAGGAGAGAGAGGTCTCGTTGCTCTCAAGAACATCAGGAAGGGAGAGAAGCTGCTCTTC
JMFF012A20+ ATAGGAGAGAGAGGTCTCGTTGCTCTCAAGAACATCAGGAAGGGAGAGAAGCTGCTCTTC
JMFF039A14+ ATAGGAGAGAGAGGTCTCGTTGCTCTCAAGAACATCAGGAAGGGAGAGAAGCTGCTCTTC
JMFF050I01+ ATAGGAGAGAGAGGTCTCGTTGCTCTCAAGAACATCAGGAAGGGAGAGAAGCTGCTCTTC
____________________________________________________________
consensus ATAGGAGAGAGAGGTCTCGTTGCTCTCAAGAACATCAGGAAGGGAGAGAAGCTGCTCTTC

. : . : . : . : . : . :
JMSF035M21+ GTGCCTCCCTCGCTCGTCATTACTGCCGATTCGGAATGGAGTGTACCAGATGCTGGTCAA
JMFF012A20+ GTGCCTCCCTCGCTCGTCATTACTGCCGATTCGGAATGGAGTGTACCAGATGCTGGTCAA
JMFF039A14+ GTGCCTCCCTCGCTCGTCATTACTGCCGATTCGGAATGGAGTGTACCAGATGCTGGTCAA
JMFF050I01+ GTGCCTCCCTCGCTCGTCATTACTGCCGATTCGGAATGGAGTGTACCAGATGCTGGTCAA
____________________________________________________________
consensus GTGCCTCCCTCGCTCGTCATTACTGCCGATTCGGAATGGAGTGTACCAGATGCTGGTCAA

. : . : . : . : . : . :
JMSF035M21+ GTGTTAAAACGTTATGGTGTACCTGATTGGCCGTTGATAGCAACGTATTTAATCAGCGAG
JMFF012A20+ GTGTTAAAACGTTATGGTGTACCTGATTGGC
JMFF039A14+ GTGTTAAAACGTTATGGTGTACCTGATTGGCCGTTGATAGCAACGTATTTAATCAGCGAG
JMFF050I01+ GTGTTAAAACGTTATGGTGTACCTGATTGGCCGTTGATAGCAACGTATTTAATCAGCGAG
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consensus GTGTTAAAACGTTATGGTGTACCTGATTGGCCGTTGATAGCAACGTATTTAATCAGCGAG

. : . : . : . : . : . :
JMSF035M21+ GCAAGTCTGATCAAGTCTTCAAGATGGAGTAACTATATCTCTGCCTTGCCTACACAGCCT
JMFF039A14+ GCAAGTCTGATCAAGTCTTCAAGATGGAGTAACTATATCTCTGCCTTGCCTACACAGCCT
JMFF050I01+ GCAAGTCTGATCAAGTCTTCAAGATGGAGTAACTATATCTCTGCCTTGCCTACACAGCCT
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consensus GCAAGTCTGATCAAGTCTTCAAGATGGAGTAACTATATCTCTGCCTTGCCTACACAGCCT

. : . : . : . : . : . :
JMSF035M21+ TACTCGCTTTTATATTGGACTCGATCAGAGCTCGACAGGTATCTGGAAGCATCACAA
JMFF039A14+ TACTCGC
JMFF050I01+ TACTCGCTTTTATATTGGACTCGATCAGAGCTCGACAGGTATCTGGAAGCATCACAAATA
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consensus TACTCGCTTTTATATTGGACTCGATCAGAGCTCGACAGGTATCTGGAAGCATCACAAATA

. : . : . : . : . : . :
JMFF050I01+ C
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consensus C