Alignment Contig 3604

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF013E12+ GGCAGTGCATGTGAACACGGCAATTGTCATTCGGGTACTGACACTGTTTCTCCTGTGATT
JMSF011I04+ CAGTGCATGTGAACACGGCAATTGTCATTCGGGTACTGACACTGTTTCTCCTGTGATT
JMSF044N17+ CAGTGCATGTGAACACGGCAATTGTCATTCGGGTACTGACACTGTTTCTCCTGTGATT
JMSF036C03+ CAGTGCATGTGAACACGGCAATTGTCATTCGGGTACTGACACTGTTTCTCCTGTGATT
JMSF023K23+ GCATGTGAACACGGCAATTGTCATTCGGGTACTGACACTGTTTCTCCTGTGATT
JMSF034A03+ ATGTGAACACGGCAATTGTCATTCGGGTACTGACACTGTTTCTCCTGTGATT
____________________________________________________________
consensus GGCAGTGCATGTGAACACGGCAATTGTCATTCGGGTACTGACACTGTTTCTCCTGTGATT

. : . : . : . : . : . :
JMSF013E12+ CCATTACTGGTCAATTTGCACTCGCCCATAACCACACCTTGACTCACTCTTCTATAAAGA
JMSF011I04+ CCATTACTGGTCAATTTGCACTCGCCCATAACCACACCTTGACTCACTCTTCTATAAAGA
JMSF044N17+ CCATTACTGGTCAATTTGCACTCGCCCATAACCACACCTTGACTCACTCTTCTATAAAGA
JMSF036C03+ CCATTACTGGTCAATTTGCACTCGCCCATAACCACACCTTGACTCACTCTTCTATAAAGA
JMSF023K23+ CCATTACTGGTCAATTTGCACTCGCCCATAACCACACCTTGACTCACTCTTCTATAAAGA
JMSF034A03+ CCATTACTGGTCAATTTGCACTCGCCCATAACCACACTTTGACTCACTCTTCTATAAAGA
____________________________________________________________
consensus CCATTACTGGTCAATTTGCACTCGCCCATAACCACACCTTGACTCACTCTTCTATAAAGA

. : . : . : . : . : . :
JMSF013E12+ AACAGGACTCCACGCCATTCTTTTGATGTAGTTTCTGTTCTATGAAGATGAAAAACACTG
JMSF011I04+ AACAGGACTCCACGCCATTCTTTTGATGTAGTTTCTGTTCTATGAAGATGAAAAACACTG
JMSF044N17+ AACAGGACTCCACGCCATTCTTTTGATGTAGTTTCTGTTCTATGAAGATGAAAAACACTG
JMSF036C03+ AACAGGACTCCACGCCATTCTTTTGATGTAGTTTCTGTTCTATGAAGATGAAAAACACTG
JMSF023K23+ AACAGGACTCCACGCCATTCTTTTGATGTAGTTTCTGTTCTATGAAGATGAAAAACACTG
JMSF034A03+ AACAGGACTCCACGCCATTCTTTTGATGTAGTTTCTGTTCTATGAAGATGAAAAACACTG
____________________________________________________________
consensus AACAGGACTCCACGCCATTCTTTTGATGTAGTTTCTGTTCTATGAAGATGAAAAACACTG

. : . : . : . : . : . :
JMSF013E12+ CGACTTTACCCTTCTTCTTCTTGTTTTTGGGCTACTTCATCAACCCATCCCTTTCAACTT
JMSF011I04+ CGACTTTACCCTTCTTCTTCTTGTTTTTGGGCTACTTCATCAACCCATCCCTTTCAACTT
JMSF044N17+ CGACTTTACCCTTCTTCTTCTTGTTTTTGGGCTACTTCATCAACCCATCCCTTTCAACTT
JMSF036C03+ CGACTTTACCCTTCTTCTTCTTGTTTTTGGGCTACTTCATCAACCCATCCCTTTCAACTT
JMSF023K23+ CGACTTTACCCTTCTTCTTCTTGTTTTTGGGCTACTTCATCAACCCATCCCTTTCAACTT
JMSF034A03+ CGACTTTACCCTTCTTCTTCTTGTTTTTGGGCTACTTCATCAACCCATCCCTTTCAACTT
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consensus CGACTTTACCCTTCTTCTTCTTGTTTTTGGGCTACTTCATCAACCCATCCCTTTCAACTT

. : . : . : . : . : . :
JMSF013E12+ ATGAGGGTCCATTATACGACTCCTCGGCCTACACAGAGTGCAAACAGCATCCAGAGGAGG
JMSF011I04+ ATGAGGGTCCATTATA
JMSF044N17+ ATGAGGGTCCATTATACGACTCCTCGGCCTACACAGAGTGCAAACAGCATCCAGAGGAGG
JMSF036C03+ ATGAGGGTCCATTATACGACTCCTCGGCCTACACAGAGTGCAAACAGCATCCAGAGGAGG
JMSF023K23+ ATGAGGGTCCATTATACGACTCCTCGGCCTACACAGAGTGCAAACAGCATCCAGAGGAGG
JMSF034A03+ ATGAGGGTCCATTATACGACTCCTCGGCCTACACAGAGTGCAAACAGCATCCAGAGGAGG
____________________________________________________________
consensus ATGAGGGTCCATTATACGACTCCTCGGCCTACACAGAGTGCAAACAGCATCCAGAGGAGG

. : . : . : . : . : . :
JMSF013E12+ CATTATACAGTGGAGGAATACTAGGGGGTAAAGTCCCAGAATCCCGACAGGTGATAGGGC
JMSF044N17+ CATTATACAGTGGAGGAATACTAGGGGGTAAAGTCCCAGAATCCCGACAGGTGATAGGGC
JMSF036C03+ CATTATACAGTGGAGGAATACTAGGGGGTAAAGTCCCAGAATCCCGACAGGTGATAGGGC
JMSF023K23+ CATTATACAGTGGAGGAATACTAGGGGGTAAAGTCCCAGAATCCCGACAGGTGATAGGGC
JMSF034A03+ CATTATACAGTGGAGGAATACTAGGGGGTAAAGTCCCAGAATCCCGACAGGTGATAGGGC
____________________________________________________________
consensus CATTATACAGTGGAGGAATACTAGGGGGTAAAGTCCCAGAATCCCGACAGGTGATAGGGC

. : . : . : . : . : . :
JMSF013E12+ TGAATGGAAAGGGAGTTTATACGCCAACATTTCTGCTGCAAGACCTAACCGCGGGCACAA
JMSF044N17+ TGAATGGAAAGGGAGTTTATACGCCAACATTTCTGCTGCAAGACCTAACCGCGGGCACAA
JMSF036C03+ TGAATGGAAAGGGAGTTTATACGCCAACATTTCTGCTGCAAGACCTAACCGCGGGCACAA
JMSF023K23+ TGAATGGAAAGGGAGTTTATACGCCAACATTTCTGCTGCAAGACCTAACCGCGGGCACAA
JMSF034A03+ TGAATGGAAAGGGAGTTTATACGCCAACATTTCTGCTGCAAGACCTAACCGCGGGCACAA
____________________________________________________________
consensus TGAATGGAAAGGGAGTTTATACGCCAACATTTCTGCTGCAAGACCTAACCGCGGGCACAA

. : . : . : . : . : . :
JMSF013E12+ TTTATTGTTTTTCCAGTTGGGTCAGAATAG
JMSF044N17+ TTTATTGTTTTTCCAGTTGGGTCAGAATAGAAAATGCAGATTCTGCTCTCTTAACGGCTA
JMSF036C03+ TTTATTGTTTTTCCAGTTGGGTCAGAATAGAAAATGCAGATTCTGCTCTCTTAACGGCTA
JMSF023K23+ TTTATTGTTTTTCCAGTTGGGTCAGAATAGAAAATGCAGATTCTGCTCTCTTAACGGCTA
JMSF034A03+ TTTATTGTTTTTCCAGTTGGGTCAGAATAGAAAATGCAGATTCTGCTCTCTTAACGGCTA
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consensus TTTATTGTTTTTCCAGTTGGGTCAGAATAGAAAATGCAGATTCTGCTCTCTTAACGGCTA

. : . : . : . : . : . :
JMSF044N17+ GCCTCATGACTGAAAAGGGGGAACCAGATTGTGTAGGGACTGTTGTTGCTAAGCAAGGTT
JMSF036C03+ GCCTCATGACTGAAAAGGGGGAACCAGATTGTGTAGGGACTGTTGTTGCTAAGCAAGGTT
JMSF023K23+ GCCTCATGACTGAAAAGGGGGAACCAGATTGTGTAGGGACTGTTGTTGCTAAGCAAGGTT
JMSF034A03+ GCCTCATGACTGAAAAGGGGGAACCAGATTGTGTAGGGACTGTTGTTGCTAAGCAAGGTT
____________________________________________________________
consensus GCCTCATGACTGAAAAGGGGGAACCAGATTGTGTAGGGACTGTTGTTGCTAAGCAAGGTT

. : . : . : . : . : . :
JMSF044N17+ GCTGGTCTTTTATCAAGGGTGGATTTGTTTTGACTTCACCATCAAACTTATCTCTACTGT
JMSF036C03+ GCTGGTCTTTTATCAAGGGTGGATTTGTTTTGACTTCACCATCAAACTTATCTCTACTGT
JMSF023K23+ GCTGGTCTTTTATCAAGGGTGGATTTGTTTTGACTTCACCATCAAACTTATCTCTACTGT
JMSF034A03+ GCTGGTCTTTTATCAAGGGTGGATTTGTTTTGACTTCACCATCAAACTTATCTCTACTGT
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consensus GCTGGTCTTTTATCAAGGGTGGATTTGTTTTGACTTCACCATCAAACTTATCTCTACTGT

. : . : . : . : . : . :
JMSF044N17+ ACTTTCAGAATTCAGGCACAGCAGAAATCAATATAGAGATAGCAAGTGCTTCTTTGCAGC
JMSF036C03+ ACTTTCAGA
JMSF023K23+ ACTTTCAGAATTCAGGCACAGCAGAAATCAATATAGAGATAGCAAGTGCTTCTTTGCAGC
JMSF034A03+ ACTTTCAGAATTCAGGCACAGCAGAAATCAATATAGAGATAGCAAGTGCTTCTTTGCAGC
rJMSF049H12+ AGAATTAAGGCAAAGCAGAAATCAATATAGAGATAGCAAGTGCTTCTTTGCAGC
rJMSF033J04+ AGAATTAAGGCAAAGCAGAAATCAATATAGAGATAGCAAGTGCTTCTTTGCAGC
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consensus ACTTTCAGAATTCAGGCACAGCAGAAATCAATATAGAGATAGCAAGTGCTTCTTTGCAGC

. : . : . : . : . : . :
JMSF044N17+ CATTTACTCAGCAGGAATGGAGTTCAAATCAACAAACCAAAATCAACATGG
JMSF023K23+ CATTTACTC
JMSF034A03+ CATTTACTCAGCAGGAATGGAGTT
rJMSF049H12+ CATTTACTCAGCAGCAACGGAGTTTAAATCAACAAACCAAAATCAACATGGTAAGTCAAA
rJMSF033J04+ CATTTACTCAGCAGCAACGGAGTTTAAATCAACAAACCAAAATCAACATGGTAAGTCAAA
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consensus CATTTACTCAGCAGCAACGGAGTTTAAATCAACAAACCAAAATCAACATGGTAAGTCAAA

. : . : . : . : . : . :
rJMSF049H12+ CAGAAAACCCACAAATATGAAACAGAAACGCACAAAAACGGAAACAGGAAGGAAAGTTTA
rJMSF033J04+ CAGAAAACCCACAAATATGAAACAGAAACGCACAAAAACGGAAACAGGAAGGAAAGTTTA
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consensus CAGAAAACCCACAAATATGAAACAGAAACGCACAAAAACGGAAACAGGAAGGAAAGTTTA

. : . : . : . : . : . :
rJMSF049H12+ TCGGAAGAAGCAAGAGATTTGATACCAGCTTCTTCACAAGGCTATTGAGAAACTTGGAGC
rJMSF033J04+ TCGGAAGAAGCAAGAGATTTGATACCAGCTTCTTCACAAGGCTATTGAGAAACTTGGAGC
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consensus TCGGAAGAAGCAAGAGATTTGATACCAGCTTCTTCACAAGGCTATTGAGAAACTTGGAGC

. : . : . : . : . : . :
rJMSF049H12+ CAGTAATGATCTTCCTGAGAGTTTGATAAGTGTGGAGTCGGGACTCTGGAGATGGCGACC
rJMSF033J04+ CAGTAATGATCTTCCTGAGAGTTTGATAAGTGTGGAGTCGGGACTCTGGAGATGGCGACC
____________________________________________________________
consensus CAGTAATGATCTTCCTGAGAGTTTGATAAGTGTGGAGTCGGGACTCTGGAGATGGCGACC

. : . : . : . : . : . :
rJMSF049H12+ TCTCCCTCTCTTTTGAATTTCAGATTGACGATCCGGCGGCGGCAGACGGAACTGAACAAT
rJMSF033J04+ TCTCCCTCTCTTTTGAATTTCAGATTGACGATCCGGCGGCGGCAGACGGAACTGAACAAT
____________________________________________________________
consensus TCTCCCTCTCTTTTGAATTTCAGATTGACGATCCGGCGGCGGCAGACGGAACTGAACAAT

. : . : . : . : . : . :
rJMSF049H12+ TTCCTTTCGGTAATCCCCTCCTTTCGTCGCTTTTGCTGTGCTTCTCCCGCTTGTGTTCCT
rJMSF033J04+ TTCCTTTCGGTAATCCCCTCCTTTCGTCGCTTTTGCTGTGCTTCTCCCGCTTGTGTTCCT
____________________________________________________________
consensus TTCCTTTCGGTAATCCCCTCCTTTCGTCGCTTTTGCTGTGCTTCTCCCGCTTGTGTTCCT

. : . : . : . : . : . :
rJMSF049H12+ GTCCTAATTCCGTCGCTTCAGCTGTGCTTCTCCAATTTCACGTAAACTATTAATTTGTCA
rJMSF033J04+ GTCCTAATTCCGTCGCTTCAGCTGTGCTTCTCCAATTTCACGTAAACTATTAATTTGTCA
____________________________________________________________
consensus GTCCTAATTCCGTCGCTTCAGCTGTGCTTCTCCAATTTCACGTAAACTATTAATTTGTCA

. : . : . : . : . : . :
rJMSF049H12+ CCGCCTCTTCAATTGACAGAATATGTGACATTGTACAGAATGTGCAATGTTTGATTTGCA
rJMSF033J04+ CCGCCTCTTCAATTGACAGAATATGTGACATTGTACAGAATGTGCAATGTTTGATTTGCA
____________________________________________________________
consensus CCGCCTCTTCAATTGACAGAATATGTGACATTGTACAGAATGTGCAATGTTTGATTTGCA

. : . : . : . : . : . :
rJMSF049H12+ GAGTCATAGAGGCAGGTGTTATCTGTACAAATACTTGGACAGAGGAAATTTTAGGGTCCG
rJMSF033J04+ GAGTCATAGAGGCAGGTGTTATCTGTACAAATACTTGGACAGAGGAAATTTTAGGGTCCG
____________________________________________________________
consensus GAGTCATAGAGGCAGGTGTTATCTGTACAAATACTTGGACAGAGGAAATTTTAGGGTCCG

. : . : . : . : . : . :
rJMSF049H12+ GGCAACCTTGAGAGCCAAATCTTCAGAAACCATGGATCGATACCGTAATGAACCTTCCAA
rJMSF033J04+ GGCAACCTTGAGAGCCAAATCTTCAGAAACCATGGATCGATACCGTAATGAACCTTCCAA
____________________________________________________________
consensus GGCAACCTTGAGAGCCAAATCTTCAGAAACCATGGATCGATACCGTAATGAACCTTCCAA

. : . : . : . : . : . :
rJMSF049H12+ AGGGCAACTTCCTCCTTTACTGATAAAATTAGCATTGCACAGACTTGATAATTGCAAGAG
rJMSF033J04+ AGGGCAACTTCCTCCTTTACTGATAAAATTAGCATTGCACAGACTTGATAA
____________________________________________________________
consensus AGGGCAACTTCCTCCTTTACTGATAAAATTAGCATTGCACAGACTTGATAATTGCAAGAG

. : . : . : . : . : . :
rJMSF049H12+ AACATCACACATTAACCCATTAT
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consensus AACATCACACATTAACCCATTAT