Alignment Contig 3341

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN034F08- AAGCCAATGGATTTTTCACTATTTATTTCCTCCAAATCTGCATTGTTCTTTGTTTGTCAA
rJMFF047L05+ AAGCCAATGGATTTTTCACTATTTATTTCCTCCAAATCTGCATTGTTCTTTGTTTGTCAA
rJMFF039P20+ CTATTTATTTCCTCCAAATCTGCATTGTTCTTTGTTTGTCAA
rJMFF021F11+ CTATTTATTTCCTCCAAATCTGCATTGTTCTTTGTTTGTCAA
rJMSF014F16+ AATCTGCATTGTTCTTTGTTTGTCAA
____________________________________________________________
consensus AAGCCAATGGATTTTTCACTATTTATTTCCTCCAAATCTGCATTGTTCTTTGTTTGTCAA

. : . : . : . : . : . :
JMFN034F08- GCAATAGGACACACTTATCCTGAATCCATAAACTTTAAAAATGCCTCCCAAATGCTCAGT
rJMFF047L05+ GCAATAGGACACACTTATCCTGAATCCATAAACTTTAAAAATGCCTCCCAAATGCTCAGT
rJMFF039P20+ GCAATAGGACACACTTATCCTGAATCCATAAACTTTAAAAATGCCTCCCAAATGCTCAGT
rJMFF021F11+ GCAATAGGACACACTTATCCTGAATCCATAAACTTTAAAAATGCCTCCCAAATGCTCAGT
rJMSF014F16+ GCAATAGGACACACTTATCCTGAATCCATAAACTTTAAAAATGCCTCCCAAATGCTCAGT
____________________________________________________________
consensus GCAATAGGACACACTTATCCTGAATCCATAAACTTTAAAAATGCCTCCCAAATGCTCAGT

. : . : . : . : . : . :
JMFN034F08- CGAGCTGGGATATGAGAGACCCTTGGAGTTGGGGATTCAACCTTCTGAGGGAAGAAAATA
rJMFF047L05+ CGAGCTGGGATATGAAAGACCCTTGGAGTTGGGGATTCAACCTTCTGAGGGAAGAAAATA
rJMFF039P20+ CGAGCTGGGATATGAGAGACCCTTGGAGTTGGGGATTCAACCTTCTGAGGGAAGAAAATA
rJMFF021F11+ CGAGCTGGGATATGAGAGACCCTTGGAGTTGGGGATTCAACCTTCTGAGGGAAGAAAATA
rJMSF014F16+ CGAGCTGGGATATGAGAGACCCTTGGAGTTGGGGATTCAACCTTCTGAGGGAAGAAAATA
____________________________________________________________
consensus CGAGCTGGGATATGAGAGACCCTTGGAGTTGGGGATTCAACCTTCTGAGGGAAGAAAATA

. : . : . : . : . : . :
JMFN034F08- CAAAAGTGAAGTGCGAGAGCGGGGTGTGTGTCAATCATCAATGGAGGGGCGCGTCATATT
rJMFF047L05+ CAAAAGTGAAGTGCGAAAGCGGGGTGTGTGTCAATCATCAATGGAGGGGCGCGTCATATT
rJMFF039P20+ CAAAAGTGAAGTGCGAGAGCGGGGTGTGTGTCAATCATCAATGGAGGGGCGCGTCATATT
rJMFF021F11+ CAAAAGTGAAGTGCGAGAGCGGGGTGTGTGTCAATCATCAATGGAGGGGCGCGTCATATT
rJMSF014F16+ CAAAAGTGAAGTGCGAGAGCGGGGTGTGTGTCAATCATCAATGGAGGGGCGCGTCATATT
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consensus CAAAAGTGAAGTGCGAGAGCGGGGTGTGTGTCAATCATCAATGGAGGGGCGCGTCATATT

. : . : . : . : . : . :
JMFN034F08- TGGCAATCTCCGGCCACGTACGAAAGAGCTGAAGAGGTGAAGAGCTCTAGAGGGCTGAGC
rJMFF047L05+ TGGCAATCTCCGGCCACGTACGAAAGAGCTGAAGAGGTGAAGAGCTCTAAAGGGCTGAGC
rJMFF039P20+ TGGCAATCTCCGGCCACGTACGAAAGAGCTGAAGAGGTGAAGAGCTCTAGAGGGCTGAGC
rJMFF021F11+ TGGCAATCTCCGGCCACGTACGAAAGAGCTGAAGAGGTGAAGAGCTCTAGAGGGCTGAGC
rJMSF014F16+ TGGCAATCTCCGGCCACGTACGAAAGAGCTGAAGAGGTGAAGAGCTCTAGAGGGCTGAGC
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consensus TGGCAATCTCCGGCCACGTACGAAAGAGCTGAAGAGGTGAAGAGCTCTAGAGGGCTGAGC

. : . : . : . : . : . :
JMFN034F08- AAAGGGCACCATATGAGAAGCACCCCTCACAGTGGCAAAGGTTAACAACTTCCCATACTC
rJMFF047L05+ AAAGGGCACCATATGAAAAGCACCCCTCACAGTGGCAAAGGTTAA--ACTTCCCATACTC
rJMFF039P20+ AAAGGGCACCATATGAGAAGCACCCCTCACAGTGGCAAAGGTTAACAACTTCCCATACTC
rJMFF021F11+ AAAGGGCACCATATGAGAAGCACCCCTCACAGTGGCAAAGGTTAA--ACTTCCCATACTC
rJMSF014F16+ AAAGGGCACCATATGAGAAGCACCCCTCACAGTGGCAAAGGTTAACAACTTCCCATACTC
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consensus AAAGGGCACCATATGAGAAGCACCCCTCACAGTGGCAAAGGTTAACAACTTCCCATACTC

. : . : . : . : . : . :
JMFN034F08- TGTTGCCCAGCCTCCCACCTGTTTCCTGTGAAACCAAGCTCCATAAGGGACTGTAACCTT
rJMFF047L05+ TGTTGCCCAGCCTCCCACCTGTTTCCTGTGAAACCAAGCTCCATAAGGGACTGTAACCTT
rJMFF039P20+ TGTTGCCCAGCCTCCCACCTGTTTCCTGTGAAACCAAGCTCCATAAGGGACTGTAACCTT
rJMFF021F11+ TGTTGCCCAGCCTCCCACCTGTTTCCTGTGAAACCAAGCTCCATAAGGGACTGTAACCTT
rJMSF014F16+ TGTTGCCCAGCCTCCCACCTGTTTCCTGTGAAACCAAGCTCCATAAGGGACTGTAACCTT
____________________________________________________________
consensus TGTTGCCCAGCCTCCCACCTGTTTCCTGTGAAACCAAGCTCCATAAGGGACTGTAACCTT

. : . : . : . : . : . :
JMFN034F08- GAACCCCATGTCGTGAGCAAGTTCACGGACAAGTGTTCGCGACCCGAGCAATGGCACAAC
rJMFF047L05+ GAACCCCATGTCGTGAGCAAGTTCACGGACAAGTGTTCGCGACCCGAGCAATGGCACAAC
rJMFF039P20+ GAACCCCATGTCGTGAGCAAGTTCACGGACAAGTGTTCGCGACCCGAGCAATGGCACAAC
rJMFF021F11+ GAACCCCATGTCGTGAGCAAGTTCACGGACAAGTGTTCGCGACCCGAGCAATGGCACAAC
rJMSF014F16+ GAACCCCATGTCGTGAGCAAGTTCACGGACAAGTGTTCGCGACCCGAGCAATGGCACAAC
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consensus GAACCCCATGTCGTGAGCAAGTTCACGGACAAGTGTTCGCGACCCGAGCAATGGCACAAC

. : . : . : . : . : . :
JMFN034F08- CGAATCTTGATCCCCGCTGAAAATCCAAACCGGAATGTGGTTCCTTATGATC
rJMFF047L05+ CGAATCTTGATCCCCGCTGAAAATCCAAACCGGAA
rJMFF039P20+ CGAATCTTGATCCCCGCTGAAAATCCAAACCGGAATGTGGTTCCTTATGATCCTTTTAAG
rJMFF021F11+ CGAATCTTGATCCCCGCTGAAAATCCAAACCGGAATGTGGTTCCTTATGATCCTTTTAAG
rJMSF014F16+ CGAATCTTGATCCCCGCTGAAAATCCAAACCGGAATGTGGTTCCTTATGATCCTTTTAAG
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consensus CGAATCTTGATCCCCGCTGAAAATCCAAACCGGAATGTGGTTCCTTATGATCCTTTTAAG

. : . : . : . : . : . :
rJMFF039P20+ CAGAGGAAGAATGTCAATGTTTCCATCAGTTTCATTGTAGTGTAGAAATCTACTGCACAT
rJMFF021F11+ CAGAGGAAGAATGTCAATGTTTCCATCAGTTTCATTGTAGTGTAGAAATCTACTGCACAT
rJMSF014F16+ CAGAGGAAGAATGTCAATGTTTCCATCAGTTTCATTGTAGTGTAGAAATCTACTGCACAT
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consensus CAGAGGAAGAATGTCAATGTTTCCATCAGTTTCATTGTAGTGTAGAAATCTACTGCACAT

. : . : . : . : . : . :
rJMFF039P20+ AGACCAGCCATATGGCAACTTGGTACGATTTGCATGAAGGGCTTTCTGAACCTCGGGAAG
rJMFF021F11+ AGACCAGCCATATGGCAACTTGGTACGATTTGCATGAAGGGCTTTCTGAACCTCGGGAAG
rJMSF014F16+ AGACCAGCCATATGGCAACTTGGTACGATTTGCATGAAGGGCTTTCTGAACCTCGGGAAG
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consensus AGACCAGCCATATGGCAACTTGGTACGATTTGCATGAAGGGCTTTCTGAACCTCGGGAAG

. : . : . : . : . : . :
rJMFF039P20+ GTTAAAGTAAAAGCGTCTTTCATAGCTCATACAGACATCAACACCTACGCTTATCTTCGT
rJMFF021F11+ GTTAAAGTAAAAGCGTCTTTCATAGCTCATACAGACATCAACACCTACGCTTATCTTCGT
rJMSF014F16+ GTTAAAGTAAAAGCGTCTTTCATAGCTCATACAGACATCAACACCTACGCTTATCTTCGT
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consensus GTTAAAGTAAAAGCGTCTTTCATAGCTCATACAGACATCAACACCTACGCTTATCTTCGT

. : . : . : . : . : . :
rJMFF039P20+ AGCCAGCTTACGTAGCCGCAGCTCTTGCTCTACAATCGATGGATAGCATACATCGA
rJMFF021F11+ AGCCAGCTTACGTAGCCGCAGCTCTTGCTCTACAATCGATGGATAGCATACATCGA
rJMSF014F16+ AGCCAGCTTACGTAGCCGCAGCTCTTGCTCTACAATCGATGGATAGCATACATCGAGGAA
____________________________________________________________
consensus AGCCAGCTTACGTAGCCGCAGCTCTTGCTCTACAATCGATGGATAGCATACATCGAGGAA

. : . : . : . : . : . :
rJMSF014F16+ CATCGTAGTTGTCTACATATTCACCAACTATGCGGTTTGCCTCANATATGGCGTCATTAC
____________________________________________________________
consensus CATCGTAGTTGTCTACATATTCACCAACTATGCGGTTTGCCTCANATATGGCGTCATTAC

. : . : . : . : . : . :
rJMSF014F16+ ACAATTGT
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consensus ACAATTGT