Alignment Contig 3209

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF031O17+ GTTTGTTTTTCACTTTCCCGCGAGCGACACAACCCAGAATCTACTCATGACTGCACTTTT
JMFF021G02+ GTTTGTTTTTCACTTTCCCGCGAGCGACACAACCCAGAATCTACTCATGACTGCACTTTT
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consensus GTTTGTTTTTCACTTTCCCGCGAGCGACACAACCCAGAATCTACTCATGACTGCACTTTT

. : . : . : . : . : . :
JMFF031O17+ GCCCTTTTAGAGAGAGATAGAGAGAGAAGGAGAGAACAAACAAAGCAAAAGTCTCTTTCT
JMFF021G02+ GCCCTTTTAGAGAGAGATAGAGAGAGAAGGAGAGAACAAACAAAGCAAAAGTCTCTTTCT
JMFF023E14+ ATAGAGAGAGAAGGAGAGAACAAACAAAGCAAAAGTCTCTTTCT
JMSF028O14+ AAGCAAAAGTCTCTTTCT
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consensus GCCCTTTTAGAGAGAGATAGAGAGAGAAGGAGAGAACAAACAAAGCAAAAGTCTCTTTCT

. : . : . : . : . : . :
JMFF031O17+ TCTTCTTCTCTTCTCCCAGACAGAGGAGAGAGAGAGAGAGAGAAGGGGGTGGGTGGCCTA
JMFF021G02+ TCTTCTTCTCTTCTCCCAGACAGAGGAGAGAGAGAGAGAGAGAAGGGGGTGGGTGGCCTA
JMFF023E14+ TCTTCTTCTCTTCTCCCAGACAGAGGAGAGAGAGAGAGAGAGAAGGGGGTGGGTGGCCTA
JMSF028O14+ TCTTCTTCTCTTCTCCCAGACAGAGGAGAGAGAGAGAGAGAGAAGGGGGTGGGTGGCCTA
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consensus TCTTCTTCTCTTCTCCCAGACAGAGGAGAGAGAGAGAGAGAGAAGGGGGTGGGTGGCCTA

. : . : . : . : . : . :
JMFF031O17+ GAAACCTAGAAGAAAGGAAAACGACGCCGTTGCACCACCGACGATGAAGCTCACCGGAAA
JMFF021G02+ GAAACCTAGAAGAAAGGAAAACGACGCCGTTGCACCACCGACGATGAAGCTCACCGGAAA
JMFF023E14+ GAAACCTAGAAGAAAGGAAAACGACGCCGTTGCACCACCGACGATGAAGCTCACCGGAAA
JMSF028O14+ GAAACCTAGAAGAAAGGAAAACGACGCCGTTGCACCACCGACGATGAAGCTCACCGGAAA
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consensus GAAACCTAGAAGAAAGGAAAACGACGCCGTTGCACCACCGACGATGAAGCTCACCGGAAA

. : . : . : . : . : . :
JMFF031O17+ CTGTGCCGCCGCGGAATGTACTGCTAACAGTGGTAGCAATGGCGGGGCGGTGGTGGTGGT
JMFF021G02+ CTGTGCCGCCGCGGAATGTACTGCTAACAGTGGTAGCAATGGCGGGGCGGTGGTGGTGGT
JMFF023E14+ CTGTGCCGCCGCGGAATGTACTGCTAACAGTGGTAGCAATGGCGGGGCGGTGGTGGTGGT
JMSF028O14+ CTGTGCCGCCGCGGAATGTACTGCTAACAGTGGTAGCAATGGCGGGGCGGTGGTGGTGGT
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consensus CTGTGCCGCCGCGGAATGTACTGCTAACAGTGGTAGCAATGGCGGGGCGGTGGTGGTGGT

. : . : . : . : . : . :
JMFF031O17+ GGGAGTGAAAATGGATTCTCGGAGCAAAGAGCTTCTGACTTGGGCGTTGGTTAAGGTAGC
JMFF021G02+ GGGAGTGAAAATGGATTCTCGGAGCAAAGAGCTTCTGACTTGGGCGTTGGTTAAGGTAGC
JMFF023E14+ GGGAGTGAAAATGGATTCTCGGAGCAAAGAGCTTCTGACTTGGGCGTTGGTTAAGGTAGC
JMSF028O14+ GGGAGTGAAAATGGATTCTCGGAGCAAAGAGCTTCTGACTTGGGCGTTGGTTAAGGTAGC
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consensus GGGAGTGAAAATGGATTCTCGGAGCAAAGAGCTTCTGACTTGGGCGTTGGTTAAGGTAGC

. : . : . : . : . : . :
JMFF031O17+ CCAGACCGGAGATCGCATCATTGCTCTCCACGTTCTTGATCCCGACACCGATAAATCGGA
JMFF021G02+ CCAGACCGGAGATCGCATCATTGCTCTCCACGTTCTTGATCCCGACACCGATAAATCGGA
JMFF023E14+ CCAAACCGGAGATCGCATCATTGCTCTCCACGTTCTTGATCCCGACACCGATAAATCGGA
JMSF028O14+ CCAGACCGGAGATCGCATCATTGCTCTCCACGTTCTTGATCCCGACACCGATAAATCGGA
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consensus CCAGACCGGAGATCGCATCATTGCTCTCCACGTTCTTGATCCCGACACCGATAAATCGGA

. : . : . : . : . : . :
JMFF031O17+ GATGCTAAGACTGGTGAAGACATTTGATTCCGTTCTGGCTGCTTATGAAGGCTTCTGCAA
JMFF021G02+ GATGCTAAGACTGGTGAAGACATTTGATTCCGTTCTGGCTGCTTATGAAGGCTTCTGCAA
JMFF023E14+ GATGCTAAGACTGGTGAAGACATTTGATTCCGTTCTGGCTGCTTATGAAGGCTTCTGCAA
JMSF028O14+ GATGCTAAGACTGGTGAAGACATTTGATTCCGTTCTGGCTGCTTATGAAGGCTTCTGCAA
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consensus GATGCTAAGACTGGTGAAGACATTTGATTCCGTTCTGGCTGCTTATGAAGGCTTCTGCAA

. : . : . : . : . : . :
JMFF031O17+ CTTGAAGCAGGTTGATCTGAAGCTCCGGGTGTGCAGAGGGTCTCCGGCCCGGAAAA
JMFF021G02+ CTTGAAGCAGGTTGATCTGAAGCTCC
JMFF023E14+ CTTGAAGCAGGTTGATCTGAAGCTCCGGGTGTGCAGAGGGTCTCCGGCCCGGAAAATTCT
JMSF028O14+ CTTGAAGCAGGTTGATCTGAAGCTCCGGGTGTGCAGAGGGTCTCCGGCCCGGAAAATTCT
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consensus CTTGAAGCAGGTTGATCTGAAGCTCCGGGTGTGCAGAGGGTCTCCGGCCCGGAAAATTCT

. : . : . : . : . : . :
JMFF023E14+ TGCCCGGG
JMSF028O14+ TGCCCGGGAGGCAAAGACTTACAGAGCTACGGATCTGATAGTGGGCACTTCCGGCAGCCG
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consensus TGCCCGGGAGGCAAAGACTTACAGAGCTACGGATCTGATAGTGGGCACTTCCGGCAGCCG

. : . : . : . : . : . :
JMSF028O14+ CCACGCCGTCCGATCACCGGTGTCAGTTGCAAAGTACTGTGCCAGGAATGTTGACAAGAG
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consensus CCACGCCGTCCGATCACCGGTGTCAGTTGCAAAGTACTGTGCCAGGAATGTTGACAAGAG

. : . : . : . : . : . :
JMSF028O14+ CATCTCAGTTCTTGCTGTTAATAATGGGAAAGTGGCTTTCCAAAGTGAACCCAATG
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consensus CATCTCAGTTCTTGCTGTTAATAATGGGAAAGTGGCTTTCCAAAGTGAACCCAATG