Alignment Contig 3088

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF008O11+ AATACACTTCTACATGTTCATTCATTTATATATCACGGAGTATTTGATTGTTTGATGTCC
JMFF029C01+ AATACACTTCTACATGTTCATTCATTTATATATCACGGAGTATTTGATTGTTTGATGTCC
JMFF040K21+ GATGTCC
JMFF017F16+ GATGTCC
JMFF028O12+ GATGTCC
JMFF023A11+ GATGTCC
JMSF033L13+ GTCC
____________________________________________________________
consensus AATACACTTCTACATGTTCATTCATTTATATATCACGGAGTATTTGATTGTTTGATGTCC

. : . : . : . : . : . :
JMFF008O11+ GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
JMFF029C01+ GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
JMFF040K21+ GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
JMFF017F16+ GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
JMFF028O12+ GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
JMFF023A11+ GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
JMSF033L13+ GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
JMFF041L16+ GAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC
____________________________________________________________
consensus GGTGGGAATTTATAATTCCTTTTCTTGCCAAAAAATTAAGTTATGGGTTTAGTTTCTCTC

. : . : . : . : . : . :
JMFF008O11+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
JMFF029C01+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
JMFF040K21+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
JMFF017F16+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
JMFF028O12+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
JMFF023A11+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
JMSF033L13+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
JMFF041L16+ CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG
____________________________________________________________
consensus CTTTTTCTCTTTCCTCTATTGGCCCTGCCATCTTTTTCCGGCGCAGATATCTCAGCTACG

. : . : . : . : . : . :
JMFF008O11+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAGAG
JMFF029C01+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAGAG
JMFF040K21+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAG--
JMFF017F16+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAG--
JMFF028O12+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAG--
JMFF023A11+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAG--
JMSF033L13+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAGAG
JMFF041L16+ GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAG--
____________________________________________________________
consensus GTCGGAATATGCTACGGTCAACTGGGCAACAACCTTCCCACACCATCACGATCTGCAG--

. : . : . : . : . : . :
JMFF008O11+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC
JMFF029C01+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC
JMFF040K21+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCNAACCCGAAAATCCTC
JMFF017F16+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC
JMFF028O12+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC
JMFF023A11+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC
JMSF033L13+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC
JMFF041L16+ CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC
____________________________________________________________
consensus CTCATCCATGGCTTAAAGGCGAAGCGGGTCAAGATCTACGATGCCAACCCGAAAATCCTC

. : . : . : . : . : . :
JMFF008O11+ AGAGCTCTCGGGAACTCCGATGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
JMFF029C01+ AGAGCTCTCGGGAACTCCGATGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
JMFF040K21+ AGAGCTCTCGGGAACTCCGGTGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
JMFF017F16+ AGAGCTCTCGGGAACTCCGATGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
JMFF028O12+ AGAGCTCTCGGGAACTCCGATGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
JMFF023A11+ AGAGCTCTCGGGAACTCCGATGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
JMSF033L13+ AGAGCTCTCGGGAACTCCGATGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
JMFF041L16+ AGAGCTCTCGGGAACTCCGGTGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC
____________________________________________________________
consensus AGAGCTCTCGGGAACTCCGATGTTCAAGTGTCGGTCATGGTTCCCAACGAGATTATCCCC

. : . : . : . : . : . :
JMFF008O11+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
JMFF029C01+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
JMFF040K21+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
JMFF017F16+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
JMFF028O12+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
JMFF023A11+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
JMSF033L13+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
JMFF041L16+ AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT
____________________________________________________________
consensus AACATTTCCTCCGACCAAGCTTTAGCCGACCGGTGGGTGGAGACCAATGTGGTCCCGTTT

. : . : . : . : . : . :
JMFF008O11+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG
JMFF029C01+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGG
JMFF040K21+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG
JMFF017F16+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG
JMFF028O12+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG
JMFF023A11+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG
JMSF033L13+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG
JMFF041L16+ TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG
____________________________________________________________
consensus TACGGCGAGACGAAGATCCGGTACCTCCTCGTCGGGAACGAAATCCTGAGCAACCCGCCG

. : . : . : . : . : . :
JMFF008O11+ AACACCACGTGGTTTCAGCT--TGCCGGCGATGCGGAAAATCCGGCGATCCGTTAAGAAA
JMFF040K21+ AACACCACGTGGTTTCAGCTCGTGCCGGCGATGCGGAAAATCCGGCGATCCGTTAAGAAA
JMFF017F16+ AACACCACGTGGTTTCAGCTCGTGCCGGCGATGCGGAAAATCCGGCGATCCGTTAAGAAA
JMFF028O12+ AACACCACGTGGTTTCAGCTCGTGCCGGCGATGCGGAAAATCC
JMFF023A11+ AACACCACGTGGTTTCAGCTCGTGCCGGCGATGCGGAAAATCCGGCGATCCGTTAAGAAA
JMSF033L13+ AACACCACGTGGTTTCAGCTCGTGCCGGCGATGCGGAAAATCCGGCGATCCGTTAAGAAA
JMFF041L16+ AACACCACGTGGTTTCAGCTCGTGCCGGCGATGCGGAAAATCCGGCGATCCGTTAAGAAA
____________________________________________________________
consensus AACACCACGTGGTTTCAGCTCGTGCCGGCGATGCGGAAAATCCGGCGATCCGTTAAGAAA

. : . : . : . : . : . :
JMFF008O11+ TTCGGGCTGAG
JMFF040K21+ TTCGGGCTGAGGA
JMFF017F16+ TTCGGGCTGAGGAAGATCAAGGTGGGGACGCCGTTAGCCATGGATATGTTGGAGGCGTCT
JMFF023A11+ TTCGGGCTGAGGAA
JMSF033L13+ TTCGGGCTGAGGAAGATCAAGGTGGGGACGCCGTTAGCCATGGATATGTTGGAGGCGTCT
JMFF041L16+ TTCGGGCTGAGGAAGATCAAGGTGGGGACGCCGTTAGCCATGGATATGTTGGAGGCGTCT
____________________________________________________________
consensus TTCGGGCTGAGGAAGATCAAGGTGGGGACGCCGTTAGCCATGGATATGTTGGAGGCGTCT

. : . : . : . : . : . :
JMFF017F16+ TATCCGCCGTCCAGCGGGGCTTTCCGGTCCG
JMSF033L13+ TATCCGCCGTCCAGCGGGGCTTTCCGGTCCGACCTCACCGGTTCGGTTTTTAAACCGCTG
JMFF041L16+ TATCCGCCGTCCAGCGGGGCTTTCCGGTCCGACCTCACCGGTTCGGTTTTTAAACCGCTG
____________________________________________________________
consensus TATCCGCCGTCCAGCGGGGCTTTCCGGTCCGACCTCACCGGTTCGGTTTTTAAACCGCTG

. : . : . : . : . : . :
JMSF033L13+ TTACAGTTCCTGGACCGGACCAATTCTTTCTTCTTCTTCGACGTTTACCCGTATTTC
JMFF041L16+ TTACAGTTCCTGGACCGGACCAATTCTTTCTTCTTCTTCGACGTTT
____________________________________________________________
consensus TTACAGTTCCTGGACCGGACCAATTCTTTCTTCTTCTTCGACGTTTACCCGTATTTC