Alignment Contig 3078

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF006L18+ ATTTTCTATAAATAGAAAGAAACGAATACGTAATCTAAAAATCGTGACAATCTACATTGA
JMFS117C12+ AGAAACGAATACGTAATCTAAAAATCGTGACAATCTACATTGA
JMFF003O01+ ATCGTGACAATCTACATTGA
JMSF015M06+ TCGTGACAATCTACATTGA
JMFF045I24+ ATCGTGACAATCTACATTGA
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consensus ATTTTCTATAAATAGAAAGAAACGAATACGTAATCTAAAAATCGTGACAATCTACATTGA

. : . : . : . : . : . :
JMFF006L18+ CGAGTTCAATAGAGCAAGCCGAGGAGACTCTAAGGAGGGAAAATCGTTCTCGTGTCTACA
JMFS117C12+ CGAGTTCAATAGAGCAAGCCGAGGAGACTCTAAGGAGGGAAAATCGTTCTCGTGTCTACA
JMFF003O01+ CGAGTTCAATAGAGCAAGCCGAGGAGACTCTAAGGAGGGAAAATCGTTCTCGTGTCTACA
JMSF015M06+ CGAGTTCAATAGAGCAAGCCGAGGAGACTCTAAGGAGGGAAAATCGTTCTCGTGTCTACA
JMFF045I24+ CGAGTTCAATAGAGCAAGCCGAGGAGACTCTAAGGAGGGAAAATCGTTCTCGTGTCTACA
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consensus CGAGTTCAATAGAGCAAGCCGAGGAGACTCTAAGGAGGGAAAATCGTTCTCGTGTCTACA

. : . : . : . : . : . :
JMFF006L18+ ATTTGGAAACCCTAACTCCAATCCATCTACCCTGCTAGGTTGCCACTACAATGTACAACC
JMFS117C12+ ATTTGGAAACCCTAACTCCAATCCATCTACCCTGCTAGGTTGCCACTACAATGTACAACC
JMFF003O01+ ATTTGGAAACCCTAACTCCAATCCATCTACCCTGCTAGGTTGCCACTACAATGTACAACC
JMSF015M06+ ATTTGGAAACCCTAACTCCAATCCATCTACCCTGCTAGGTTGCCACTACAATGTACAACC
JMFF045I24+ ATTTGGAAACCCTAACTCCAATCCATCTACCCTGCTAGGTTGCCACTACAATGTACAACC
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consensus ATTTGGAAACCCTAACTCCAATCCATCTACCCTGCTAGGTTGCCACTACAATGTACAACC

. : . : . : . : . : . :
JMFF006L18+ CTAATTACGATTCCAGATACGCTGACTCCAATTCCTATCGTCAACGCAGAAGTGATCTGA
JMFS117C12+ CTAATTACGATTCCAGATACGCTGACTCCAATTCCTATCGTCAACGCAGAAGTGATCTGA
JMFF003O01+ CTAATTACGATTCCAGATACGCTGACTCCAATTCCTATCGTCAACGCAGAAGTGATCTGA
JMSF015M06+ CTAATTACGATTCCAGATACGCTGACTCCAATCCCTATCGTCAACGCAGAAGTGATCTGA
JMFF045I24+ CTAATTACGATTCCAGATACGCTGACTCCAATTCCTATCGTCAACGCAGAAGTGATCTGA
JMSF019C11+ ACGCTGACTCCAATTCCTATCGTCAACGCAGAAGTGATCTGA
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consensus CTAATTACGATTCCAGATACGCTGACTCCAATTCCTATCGTCAACGCAGAAGTGATCTGA

. : . : . : . : . : . :
JMFF006L18+ TAGGGCCACCGCATATAGCCGGTGGAGCTGCCTTAAGTAATAGCCGTGGTGCCCCAACTC
JMFS117C12+ TAGGGCCACCGCATATAGCCGGTGGAGCTGCCTTAAGTAATAGCCGTGGTGCCCCAACTC
JMFF003O01+ TAGGGCCACCGCATATAGCCGGTGGAGCTGCCTTAAGTAATAGCCGTGGTGCCCCAACTC
JMSF015M06+ TAGGGCCACCGCATATAGCCGGTGGAGCTGCCTTAAGTAATAGCCGTGGTGCCCCAACTC
JMFF045I24+ TAGGGCCACCGCATATAGCCGGTGGAGCTGCCTTAAGTAATAGCCGTGGTGCCCCAACTC
JMSF019C11+ TAGGGCCACCGCATATAGCCGGTGGAGCTGCCTTAAGTAATAGCCGTGGTGCCCCAACTC
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consensus TAGGGCCACCGCATATAGCCGGTGGAGCTGCCTTAAGTAATAGCCGTGGTGCCCCAACTC

. : . : . : . : . : . :
JMFF006L18+ CTTATGGAGGTCCTGTGGTGGCTCCGCCACGTTATTCAGGGTTCCCTTCTTTCCAGACTG
JMFS117C12+ CTTATGGAGGTCCTGTGGTGGCTCCGCCACGTTATTCAGGGTTCCCTTCTTTCCAGACTG
JMFF003O01+ CTTATGGAGGTCCTGTGGTGGCTCCGCCACGTTATTCAGGGTTCCCTTCTTTCCAGACTG
JMSF015M06+ CTTATGGAGGTCCTGTGGTGGCTCCGCCACGTTATTCAGGGTTCCCTTCTTTCCAGACTG
JMFF045I24+ CTTATGGAGGTCCTGTGGTGGCTCCGCCACGTTATTCAGGGTTCCCTTCTTTCCAGACTG
JMSF019C11+ CTTATGGAGGTCCTGTGGTGGCTCCGCCACGTTATTCAGGGTTCCCTTCTTTCCAGACTG
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consensus CTTATGGAGGTCCTGTGGTGGCTCCGCCACGTTATTCAGGGTTCCCTTCTTTCCAGACTG

. : . : . : . : . : . :
JMFF006L18+ GTGGGGATGAGGATCGAGGTGGTGCTGGGCGGGGATTTGATTTGAGCCGAGGGGGTAGGG
JMFS117C12+ GTGGGAATGAGGATCGAGGTGGTGCTGGGCGGGGATTTGATTTGAGCCGAGGGGGTAGGG
JMFF003O01+ GTGGGAATGAGGATCGAGGTGGTGCTGGGCGGGGATTTGATTTGAGCCGAGGGGGTAGGG
JMSF015M06+ GTGGGAATGAGGATCGAGGTGGTGCTGGGCGGGGATTTGATTTGAGCCGAGGGGGTAGGG
JMFF045I24+ GTGGGAATGAGGATCGAGGTGGTGCTGGGCGGGGATTTGATTTGAGCCGAGGGGGTAGGG
JMSF019C11+ GTGGGAATGAGGATCGAGGTGGTGCTGGGCGGGGATTTGATTTGAGCCGAGGGGGTAGGG
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consensus GTGGGAATGAGGATCGAGGTGGTGCTGGGCGGGGATTTGATTTGAGCCGAGGGGGTAGGG

. : . : . : . : . : . :
JMFF006L18+ CTAGTGGGGAGGGGGTTTGATAGAGGACACGGTGGACGTGGAGGTGGGAGATCTGGATAT
JMFS117C12+ CTAGTGGG-AGGGGGTTTGATAGAGGACACGGTGGACGTGGAGGTGGGAGATCTGGATAT
JMFF003O01+ CTAGTGGG-AGGGGGTTTGATAGAGGACACGGTGGACGTGGAGGTGGGAGATCTGGATAT
JMSF015M06+ CTAGTGGG-AGGGGGTTTGATAGAGGACACGGTGGACGTGGAGGTGGGAGATCTGGATAT
JMFF045I24+ CTAGTGGG-AGGGGGTTTGATAGAGGACACGGTGGACGTGGAGGTGGGAGATCTGGATAT
JMSF019C11+ CTAGTGGG-AGGGGGTTTGATAGAGGACACGGTGGACGTGGAGGTGGGAGATCTGGATAT
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consensus CTAGTGGG-AGGGGGTTTGATAGAGGACACGGTGGACGTGGAGGTGGGAGATCTGGATAT

. : . : . : . : . : . :
JMFF006L18+ GATGGAGGGCGAAGTGGTGGCACAGGTAGGCATGGGGCACATGGCAGGGGGCGAGATGAT
JMFS117C12+ GATGGAGGGCGAAGTGGTG
JMFF003O01+ GATGGAGGGCGAAGTGGTGGCACAGGTAGGCATGGGGCACATGGCAGGGGGCGAGATGAT
JMSF015M06+ GATGGAGGGCGAAGTGGTGGCACAGGTAGGCATGGGGCACATGGC
JMFF045I24+ GATGGAGGGCGAAGTGGTGGCACAGGTAGGCATGGGGCACATGGCAGGGGGCGAGATGAT
JMSF019C11+ GATGGAGGGCGAAGTGGTGGCACAGGTAGGCATGGGGCACATGGCAGGGGGCGAGATGAT
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consensus GATGGAGGGCGAAGTGGTGGCACAGGTAGGCATGGGGCACATGGCAGGGGGCGAGATGAT

. : . : . : . : . : . :
JMFF006L18+ TTGGATAACATTTCCCTTCCA
JMFF003O01+ TTGGATAACATTTCCCTTCCA
JMFF045I24+ TTGGATAACATTTCCCTTCCAAAACAAGATTTTGGAAACTTGGTTCGCTTTGAGAAGAAC
JMSF019C11+ TTGGATAACATTTCCCTTCCAAAACAAGATTTTGGAAACTTGGTTCGCTTTGAGAAGAAC
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consensus TTGGATAACATTTCCCTTCCAAAACAAGATTTTGGAAACTTGGTTCGCTTTGAGAAGAAC

. : . : . : . : . : . :
JMFF045I24+ TTCTACTCTGAGAGTCCATCAGTGATGGCAATGACTGAGCACGAGGTTGCACTATATCG
JMSF019C11+ TTCTACTCTGAGAGTCCATCAGTGATGGCAATGACTGAGCACGAGGTTGCACTATATCGT
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consensus TTCTACTCTGAGAGTCCATCAGTGATGGCAATGACTGAGCACGAGGTTGCACTATATCGT

. : . : . : . : . : . :
JMSF019C11+ GCAAGGCGTGAGGTTACAGTTGAGGGCACGGATATCCCAAAGCCAATTCGAATGTTCCAT
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consensus GCAAGGCGTGAGGTTACAGTTGAGGGCACGGATATCCCAAAGCCAATTCGAATGTTCCAT

. : . : . : . : . : . :
JMSF019C11+ GAGGCAAACTTTCCTGCGTATT
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consensus GAGGCAAACTTTCCTGCGTATT