Alignment Contig 3071

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF005J16+ CTCTCATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
JMFF024A20+ ATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
JMFF038A22+ ATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
JMSF043J23+ ATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
JMFF011F20+ ATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
JMFF022F12+ ATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
JMFF002H13+ ATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
JMSF034M17+ ATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC
____________________________________________________________
consensus CTCTCATAAAACCAAATTCAGATTCTAACGGCGGCATCTAACCGCCACGCTTTTCTCCAC

. : . : . : . : . : . :
JMFF005J16+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
JMFF024A20+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
JMFF038A22+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
JMSF043J23+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
JMFF011F20+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
JMFF022F12+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
JMFF002H13+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
JMSF034M17+ TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG
____________________________________________________________
consensus TCAGAATGGACGTTCGCCGGCGTCTGAGCAAGCAGCTTTGCCGGCCTAATAAGGGCTCTG

. : . : . : . : . : . :
JMFF005J16+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
JMFF024A20+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
JMFF038A22+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
JMSF043J23+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
JMFF011F20+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
JMFF022F12+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
JMFF002H13+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
JMSF034M17+ CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA
____________________________________________________________
consensus CGGCGGCGTGTGAGACTATTAAGGCTCATAAACAGCAATATCTTCTAGTGTCCTCGCCTA

. : . : . : . : . : . :
JMFF005J16+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
JMFF024A20+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
JMFF038A22+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
JMSF043J23+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
JMFF011F20+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
JMFF022F12+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
JMFF002H13+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
JMSF034M17+ AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT
____________________________________________________________
consensus AGGCGTCGGATGCCCTTCCCCTGCCGTTGTATTTGACAAATGGGTTGTTTTTCACCATGT

. : . : . : . : . : . :
JMFF005J16+ TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
JMFF024A20+ TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
JMFF038A22+ TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
JMSF043J23+ TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
JMFF011F20+ TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
JMFF022F12+ TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
JMFF002H13+ NCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
JMSF034M17+ TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC
____________________________________________________________
consensus TCTTTACGGTGATGTATTTTCTGCTGGTGAGGTGGAGGGAGAAGATCCGGAACTCTACGC

. : . : . : . : . : . :
JMFF005J16+ CTCTCCATGTGGTGACGTTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
JMFF024A20+ CTCTCCATGTGGTGACGTTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
JMFF038A22+ CTCTCCATGTGGTGACGTTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
JMSF043J23+ CTCTCCATGTGGTGACGTTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
JMFF011F20+ CTCTCCATGTGGTGACATTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
JMFF022F12+ CTCTCCATGTGGTGACATTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
JMFF002H13+ CTCTCCATGTGGTGACGTTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
JMSF034M17+ CTCTCCATGTGGTGACGTTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA
____________________________________________________________
consensus CTCTCCATGTGGTGACGTTGTCGGAGCTGGCTGCGTTGGCGTCGTTGATCGCCTCGGTGA

. : . : . : . : . : . :
JMFF005J16+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
JMFF024A20+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
JMFF038A22+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
JMSF043J23+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
JMFF011F20+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
JMFF022F12+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
JMFF002H13+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
JMSF034M17+ TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC
____________________________________________________________
consensus TTTACCTGCTGGGGTTCTTTGGGATCGGGTTCGTGCAGTCTTTTCTGTACAGGGCGAATC

. : . : . : . : . : . :
JMFF005J16+ AGGAGGGGTGGGATGGGGGAGGATGANAGCAATGAGCAGTATTTGTTGGAA
JMFF024A20+ A
JMFF038A22+ ANGAGGGGTGGGATGGG
JMSF043J23+ AGGAGGGGTGGGATGGGG-AGGATGAGAGCAATGAGCAGTATTTGTTGGAAGAGGATAGC
JMFF011F20+ AGGAGGGGTGGGA
JMFF022F12+ AGGAGGGGTGGG
JMFF002H13+ AGGAGGGGTGGGATGGGG-AGGATGANAGCAATGAGCAGTATTTGTTGGAAGAGGATAGC
JMSF034M17+ AGGAGGGGTGGGATGGGGGAGGATGAGAGCAATGAGCAGTATTTGTTGGAAGAGGATAGC
____________________________________________________________
consensus AGGAGGGGTGGGATGGGGGAGGATGAGAGCAATGAGCAGTATTTGTTGGAAGAGGATAGC

. : . : . : . : . : . :
JMSF043J23+ CGGCGTGGGGCTTGTTCGGCTGCGGCGGCGGCAACTACTCTGGGCTGCGCTATTCCCCCA
JMFF002H13+ CGGCGTGGGGCTTGTTC
JMSF034M17+ CGGCGTGGGGCTTGTTCGGCTGCGGCGGCGGCAACTACTCTGGGCTGCGCTATTCCCCCA
____________________________________________________________
consensus CGGCGTGGGGCTTGTTCGGCTGCGGCGGCGGCAACTACTCTGGGCTGCGCTATTCCCCCA

. : . : . : . : . : . :
JMSF043J23+ CCCACACCACCTGTTCGACGAATTGCCTCAGTGGTTCCTGAGCAACCTGCGAAGATCTCC
JMSF034M17+ CCCACACCACCTGTTCGACGAATTGCCTCANTGGTTCCTGAGCAACCTGCGAAGATCTCC
____________________________________________________________
consensus CCCACACCACCTGTTCGACGAATTGCCTCAGTGGTTCCTGAGCAACCTGCGAAGATCTCC

. : . : . : . : . : . :
JMSF043J23+ AACGGCGTGGCTGAGAAACCAGCTCTCTTAATTGCACCGGACGGGTCTGAGGAGGACGAG
JMSF034M17+ AACGGCGTGGCTGAAAAACCAGCTCTCTTAATTGCACCGGACGGGTCTGANGAGGACGAG
____________________________________________________________
consensus AACGGCGTGGCTGAAAAACCAGCTCTCTTAATTGCACCGGACGGGTCTGAGGAGGACGAG

. : . : . : . : . : . :
JMSF043J23+ GAGATTATCANCTCCGTTGTGGCGGGGAAAACTCCGTCCTATTTGTTGGAATCG
JMSF034M17+ GAGATTATCAGCTCCGT
____________________________________________________________
consensus GAGATTATCAGCTCCGTTGTGGCGGGGAAAACTCCGTCCTATTTGTTGGAATCG