Alignment Contig 3068

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF005B06+ GAGAAAAATGGATCAAAGATTTTACTTTTCTACGGTTCTTGAATCTTGATCTCTGAGACA
JMFF040M03+ GAAAAATGGATCAAAGATTTTACTTTTCTACGGTTCTTGAATCTTGATCTCTGAGACA
JMFF009F12+ AAAAATGGATCAAAGATTTTACTTTTCTACGGTTCTTGAATCTTGATCTCTGAGACA
JMSF011L06+ AATGGATCAAAGATTTTACTTTTCTACGGTTCTTGAATCTTGATCTCTGAGACA
JMFF009K09+ GGATCAAAGATTTTACTTTTCTACGGTTCTTGAATCTTGATCTCTGAGACA
JMFF014P09+ GGATCAAAGATTTTACTTTTCTACGGTTCTTGAATCTTGATCTCTGAGACA
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consensus GAGAAAAATGGATCAAAGATTTTACTTTTCTACGGTTCTTGAATCTTGATCTCTGAGACA

. : . : . : . : . : . :
JMFF005B06+ GAGTTCTACCGACAGTTTACTACCAAGTCAAGAGTTCCCAGACTGGAAACCTCGTACATC
JMFF040M03+ GAGTTCTACCGACAGTTTACTACCAAGTCAAGAGTTCCCAGACTGGAAACCTCGTACATC
JMFF009F12+ GAGTTCTACCGACAGTTTACTACCAAGTCAAGAGTTCCCAGACTGGAAACCTCGTACATC
JMSF011L06+ GAGTTCTACCGACAGTTTACTACCAAGTCAAGAGTTCCCAGACTGGAAACCTCGTACATC
JMFF009K09+ GAGTTCTACCGACAGTTTACTACCAAGTCAAGAGTTCCCAGACTGGAAACCTCGTACATC
JMFF014P09+ GAGTTCTACCGACAGTTTACTACCAAGTCAAGAGTTCCCAGACTGGAAACCTCGTACATC
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consensus GAGTTCTACCGACAGTTTACTACCAAGTCAAGAGTTCCCAGACTGGAAACCTCGTACATC

. : . : . : . : . : . :
JMFF005B06+ GAACTTAAAGGATCCCAGGGATTCTATGGCGAACAAAGTAACCTCGGGGGATAGTAGGAC
JMFF040M03+ GAACTTAAAGGATCCCAGGGATTCTATGGCGAACAAAGTAACCTCGGGGGATAGTAGGAC
JMFF009F12+ GAACTTAAAGGATCCCAGGGATTCTATGGCGAACAAAGTAACCTCGGGGGATAGTAGGAC
JMSF011L06+ GAACTTAAAGGATCCCAGGGATTCTATGGCGAACAAAGTAACCTCGGGGGATAGTAGGAC
JMFF009K09+ GAACTTAAAGGATCCCAGGGATTCTATGGCGAACAAAGTAACCTCGGGGGATAGTAGGAC
JMFF014P09+ GAACTTAAAGGATCCCAGGGATTCTATGGCGAACAAAGTAACCTCGGGGGATAGTAGGAC
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consensus GAACTTAAAGGATCCCAGGGATTCTATGGCGAACAAAGTAACCTCGGGGGATAGTAGGAC

. : . : . : . : . : . :
JMFF005B06+ TAGGAGCTCGGTGTCGATTTTTATAGTAGCGGGTCTCTGTTGTTTCTTCTATTTACTGGG
JMFF040M03+ TAGGAGCTCGGTGTCGATTTTTATAGTAGCGGGTCTCTGTTGTTTCTTCTATTTACTGGG
JMFF009F12+ TAGGAGCTCGGTGTCGATTTTTATAGTAGCGGGTCTCTGTTGTTTCTTCTATTTACTGGG
JMSF011L06+ TAGGAGCTCGGTGTCGATTTTTATAGTAGCGGGTCTCTGTTGTTTCTTCTATTTACTGGG
JMFF009K09+ TAGGAGCTCGGTGTCGATTTTTATAGTAGCGGGTCTCTGTTGTTTCTTCTATTTACTGGG
JMFF014P09+ TAGGAGCTCGGTGTCGATTTTTATAGTAGCGGGTCTCTGTTGTTTCTTCTATTTACTGGG
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consensus TAGGAGCTCGGTGTCGATTTTTATAGTAGCGGGTCTCTGTTGTTTCTTCTATTTACTGGG

. : . : . : . : . : . :
JMFF005B06+ AGCGTGGCAAAGGAGTGGGTTCGGGAAGGGAGACAGCATAGCATTGGAGGTGACAAAGAC
JMFF040M03+ AGCGTGGCAAAGGAGTGGGTTCGGGAAGGGAGACAGCATAGCATTGGAGGTGACAAAGAC
JMFF009F12+ AGCGTGGCAAAGGAGTGGGTTCGGGAAGGGAGACAGCATAGCATTGGAGGTGACAAAGAC
JMSF011L06+ AGCGTGGCAAAGGAGTGGGTTCGGGAAGGGAGACAGCATAGCGTTGGAGGTGACAAAGAC
JMFF009K09+ AGCGTGGCAAAGGAGTGGGTTCGGGAAGGGAGACAGCATAGCATTGGAGGTGACAAAGAC
JMFF014P09+ AGCGTGGCAAAGGAGTGGGTTCGGGAAGGGAGACAGCATAGCATTGGAGGTGACAAAGAC
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consensus AGCGTGGCAAAGGAGTGGGTTCGGGAAGGGAGACAGCATAGCATTGGAGGTGACAAAGAC

. : . : . : . : . : . :
JMFF005B06+ GAGTAAAGATTGCAACATCTTGCCGAGTCTAAATTTCGAGACACATCATAGCGGTCGAGC
JMFF040M03+ GAGTAAAGATTGCAACATCTTGCCGAGTCTAAATTTCGAGACACATCATAGCGGTCGAGC
JMFF009F12+ GAGTAAAGATTGCAACATCTTGCCGAGTCTAAATTTCGAGACACATCATAGCGGTCGAGC
JMSF011L06+ GAGTAAAGATTGCAACATCTTGCCGAGTCTAAATTTCGAGACACATCATAGCGGTCGAGC
JMFF009K09+ GAGTAAAGATTGCAACATCTTGCCGAGTCTAAATTTCGAGACACATCATAGCGGTCGAGC
JMFF014P09+ GAGTAAAGATTGCAACATCTTGCCGAGTCTAAATTTCGAGACACATCATAGCGGTCGAGC
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consensus GAGTAAAGATTGCAACATCTTGCCGAGTCTAAATTTCGAGACACATCATAGCGGTCGAGC

. : . : . : . : . : . :
JMFF005B06+ TGGGAGTATTGATGAGTCNGAGTCGAAAGTGAAAGAGATTAAGCCTTGCCATCCTCGCTA
JMFF040M03+ TGGGAGTATTGATGAGTCGGAGTCGAAAGTGAAAGAGATTAAGCCTTGCCATCCTCGCTA
JMFF009F12+ TGGGAGTATTGATGAGTCGGAGTCGAAAGTGAAAGAGATTAAGCCTTGCCATCCTCGCTA
JMSF011L06+ TGGGAGTATCGATGAGTCGGAGTCGAAAGTG
JMFF009K09+ TGGGAGTATTGATGAGTCGGAGTCGAAAGTGAAAGAGATTAAGCCTTGCCATCCTCGCTA
JMFF014P09+ TGGGAGTATTGATGAGTCGGAGTCGAAAGTGAAAGAGATTAAGCCTTGCCATCCTCGCTA
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consensus TGGGAGTATTGATGAGTCGGAGTCGAAAGTGAAAGAGATTAAGCCTTGCCATCCTCGCTA

. : . : . : . : . : . :
JMFF005B06+ CACCGACTACACTCCATGCCAAGATCAAAGGCGTGCTATGACCTTTTCGAGGCAAAATAT
JMFF040M03+ CACCGACTACACTCCAT
JMFF009F12+ CACCGACTACACTCCATGCCAAGATCAAAGGCGTGCTATGACCTTTTCGAGGCAAAATAT
JMFF009K09+ CACCGACTACACTCCATGCCAAGATCAAAGGCGTGCTATGACCTTTTCGAGGCAAAATAT
JMFF014P09+ CACCGACTACACTCCATGCCAAGATCAAAGGCGTGCTATGACCTTTTCGAGGCAAAATAT
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consensus CACCGACTACACTCCATGCCAAGATCAAAGGCGTGCTATGACCTTTTCGAGGCAAAATAT

. : . : . : . : . : . :
JMFF005B06+ GATCTACCGAGAAA
JMFF009F12+ GATCTACCGAGAAAGGCACTGCCCTCCTCGAGAAAAGAAGTTGCATTGCCTTATCCCGGC
JMFF009K09+ GATCTACCGAGAAAGGCACTGCCCTCCTCGAGAAAAGAAGTTGCATTGCCTTATCCCGGC
JMFF014P09+ GATCTACCGAGAAAGGCACTGCCCTCCTCGAGAAAAGAAGTTGCATTGCCTTATCCCGGC
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consensus GATCTACCGAGAAAGGCACTGCCCTCCTCGAGAAAAGAAGTTGCATTGCCTTATCCCGGC

. : . : . : . : . : . :
JMFF009F12+ GCCAAAAGGATATGTAACCCCGTTCCCGTGGCC
JMFF009K09+ GCCAAAAGGATATGTAACCCCGTTCCCGTGGCCAAAGAGTCGGGATTATGTTCC
JMFF014P09+ GCCAAAAGGATATGTAACCCCGTTCCCGTGGCCAAAGAGTCGGGATTATGTTCCTTACGC
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consensus GCCAAAAGGATATGTAACCCCGTTCCCGTGGCCAAAGAGTCGGGATTATGTTCCTTACGC

. : . : . : . : . : . :
JMFF014P09+ CAACGCACCTTACAA
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consensus CAACGCACCTTACAA