Alignment Contig 2978

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF045F20+ ATAGGAATTCGTGGTCATTACAACTCATAATTCTGCGTTTTGTTAAGCACATGGCCACTA
rJMSF034J19+ GTCATTACAACTCATAATTCTGCGTTTTGTTAAGCACATGGCCACTA
____________________________________________________________
consensus ATAGGAATTCGTGGTCATTACAACTCATAATTCTGCGTTTTGTTAAGCACATGGCCACTA

. : . : . : . : . : . :
rJMSF045F20+ CTAATACACACTCGAGTTCAAACAGGAGAATAGCTACAGAGATCATATGTATCGTTACAA
rJMSF050N24+ AGAATAGCTACAGAGATCATATGTATCGTTACAA
rJMSF034J19+ CTAATACACACTCGAGTTCAAACAGGAGAATAGCTACAGAGATCATATGTATCGTTACAA
rJMSF013C21+ GGAGAATAGCTACAGAGATCATATGTATCGTTACAA
____________________________________________________________
consensus CTAATACACACTCGAGTTCAAACAGGAGAATAGCTACAGAGATCATATGTATCGTTACAA

. : . : . : . : . : . :
rJMSF045F20+ CACTCAATCTTCTAAACTATACACACTAACTTGAAAGCAGAGTCCTACATTAGATTAGAT
rJMSF050N24+ CACTCAATCTTCTAAACTATACACACTAACTTGAAAGCAGAGTCCTACATTAGATTAGAT
rJMSF034J19+ CACTCAATCTTCTAAACTATACACACTAACTTGAAAGCAGAGTCCTACATTAGATTAGAT
rJMSF013C21+ CACTCAATCTTCTAAACTATACACACTAACTTGAAAGCAGAGTCCTACATTAGATTAGAT
____________________________________________________________
consensus CACTCAATCTTCTAAACTATACACACTAACTTGAAAGCAGAGTCCTACATTAGATTAGAT

. : . : . : . : . : . :
rJMSF045F20+ TGGGGTTCTTTTTGCAGTATTTACTTAATCTGCAGGTTGGAGCTGGACATGGGGGCAAGG
rJMSF050N24+ TGGGGTTCTTTTTGCAGTATTTACTTAATCTGCAGGTTGGAGCTGGACATGGGGGCAAGG
rJMSF034J19+ TGGGGTTCTTTTTGCAGTATTTACTTAATCTGCAGGTTGGAGCTGGACATGGGGGCAAGG
rJMSF013C21+ TGGGGTTCTTTTTGCAGTATTTACTTAATCTGCAGGTTGGAGCTGGACATGGGGGCAAGG
____________________________________________________________
consensus TGGGGTTCTTTTTGCAGTATTTACTTAATCTGCAGGTTGGAGCTGGACATGGGGGCAAGG

. : . : . : . : . : . :
rJMSF045F20+ TCGGTCAGGGTCGCCTTTCGTCCATAAATGCTTGAGGTCGCCTCTTTTCTTTCCTAGTGT
rJMSF050N24+ TCGGTCAGGGTCGCCTTTCGTCCATAAATGCTTGAGGTCGCCTCTTTTCTTTCCTAGTGT
rJMSF034J19+ TCGGTCAGGGTCGCCTTTCGTCCATAAATGCTTGAGGTCGCCTCTTTTCTTTCCTAGTGT
rJMSF013C21+ TCGGTCAGGGTCGCCTTTCGTCCATAAATGCTTGAGGTCGCCTCTTTTCTTTCCTAGTGT
____________________________________________________________
consensus TCGGTCAGGGTCGCCTTTCGTCCATAAATGCTTGAGGTCGCCTCTTTTCTTTCCTAGTGT

. : . : . : . : . : . :
rJMSF045F20+ CAAAAACGTTCCTAAAGTGAAAGGAACTATGTAAAGCAATGCGGGTTGGCCATGTCCATC
rJMSF050N24+ CAAAAACGTTCCTAAAGTGAAAGGAACTATGTAAAGCAATGCGGGTTGGCCATGTCCATC
rJMSF034J19+ CAAAAACGTTCCTAAAGTGAAAGGAACTATGTAAAGCAATGCGGGTTGGCCATGTCCATC
rJMSF013C21+ CAAAAACGTTCCTAAAGTGAAAGGAACTATGTAAAGCAATGCGGGTTGGCCATGTCCATC
____________________________________________________________
consensus CAAAAACGTTCCTAAAGTGAAAGGAACTATGTAAAGCAATGCGGGTTGGCCATGTCCATC

. : . : . : . : . : . :
rJMSF045F20+ CATCAAGTTGAGAGCCAAATATGTTATAAGCAAACCTAAACCATAAGCCATCATTGCCCA
rJMSF050N24+ CATCAAGTTGAGAGCCAAATATGTTATAAGCAAACCTAAACCATAAGCCATCATTGCCCA
rJMSF034J19+ CATCAAGTTGAGAGCCAAATATGTTATAAGCAAACCTAAACCATAAGCCATCATTGCCCA
rJMSF013C21+ CATCAAGTTGAGAGCCAAATATGTTATAAGCAAACCTAAACCATAAGCCATCATTGCCCA
____________________________________________________________
consensus CATCAAGTTGAGAGCCAAATATGTTATAAGCAAACCTAAACCATAAGCCATCATTGCCCA

. : . : . : . : . : . :
rJMSF045F20+ TAGAAAGTAACCCGTACGAAGACTCTTTTTAGATAACCAATCATACCTTAGTGAAAATGC
rJMSF050N24+ TAGAAAGTAACCCGTACGAAGACTCTTTTTAGATAACCAATCATACCTTAGTGAAAATGC
rJMSF034J19+ TAGAAAGTAACCCGTACGAAGACTCTTTTTAGATAACCAATCATACCTTAGTGAAAATGC
rJMSF013C21+ TAGAAAGTAACCCGTACGAAGACTCTTTTTAGATAACCAATCATACCTTAGTGAAAATGC
____________________________________________________________
consensus TAGAAAGTAACCCGTACGAAGACTCTTTTTAGATAACCAATCATACCTTAGTGAAAATGC

. : . : . : . : . : . :
rJMSF045F20+ TACAAGTAAACCCGGTAGAATAATGTCACCAAAACCGATGACACTATAACCACCCCAAGG
rJMSF050N24+ TACAAGTAAACCCGGTAGAATAATGTCACCAAAACCGATGACACTATAACCACCCCAAGG
rJMSF034J19+ TACAAGTAAACCCGGTAGAATAATGTCACCAAAACCGATGACACTATAACCACCCCAAGG
rJMSF013C21+ TACAAGTAAACCCGGTAGAATAATGTCACCAAAACCGATGACACTATAACCACCCCAAGG
____________________________________________________________
consensus TACAAGTAAACCCGGTAGAATAATGTCACCAAAACCGATGACACTATAACCACCCCAAGG

. : . : . : . : . : . :
rJMSF045F20+ ATCAAACATCCGTGGGATTTTCAGCAGCATGGGTATTCCATCTTCTCCACTTTTATCACC
rJMSF050N24+ ATCAAACATCCGTGGGATTTTCAGCAGCATGGGTATTCCATCTTCTCCACTTTTATCACC
rJMSF034J19+ ATCAAACATCCGTGGGATTTTCAGCAGCATGGGTATTCCATCTTCTCCACTTTTATCACC
rJMSF013C21+ ATCAAACATCCGTGGGATTTTCAGCAGCATGGGTATTCCATCTTCTCCACTTTTATCACC
____________________________________________________________
consensus ATCAAACATCCGTGGGATTTTCAGCAGCATGGGTATTCCATCTTCTCCACTTTTATCACC

. : . : . : . : . : . :
rJMSF045F20+ ACGAGCAACCACTATCATTACACTCTCGTG-AAACCACCATTTTGAAACAAACACCCAGA
rJMSF050N24+ ACGAGCAACCACTATCATTACACTCTCGTGGAAACCACCATTTTGAAACAAACACCCAGA
rJMSF034J19+ ACGAGCAACCACTATCATTACACTCTCGTG-AAACCACCATTTTGAAACAAACACCCAGA
rJMSF013C21+ ACGAGCAACCACTATCATTACACTCTCGTG-AAACCACCATTTTGAAACAAACACCCAGA
____________________________________________________________
consensus ACGAGCAACCACTATCATTACACTCTCGTG-AAACCACCATTTTGAAACAAACACCCAGA

. : . : . : . : . : . :
rJMSF045F20+ ACAGGTCATATAAGAAAGCACAGCCGAGAAGAACAGTTCCGACCTTGAGATTGGGAACTC
rJMSF050N24+ ACAGGTCATATAAGAAAGCACAGCCGAGAAGAACAGTTCCGACCT
rJMSF034J19+ ACAGGTCATATAAGAAAGCACAGCCGAGAAGAACAGTTCCGACCTTGAGATTGGGAACTC
rJMSF013C21+ ACAGGTCATATAAGAAAGCACAGCCGAGAAGAACAGTTCCGACCTTGAGATTGGGAACTC
____________________________________________________________
consensus ACAGGTCATATAAGAAAGCACAGCCGAGAAGAACAGTTCCGACCTTGAGATTGGGAACTC

. : . : . : . : . : . :
rJMSF045F20+ GCACAATTTGGAGAACTGTGATAATCAACGCAATACC
rJMSF034J19+ GCACAATTTGGAGAACTGTGA
rJMSF013C21+ GCACAATTTGGAGAACTGTGATAATCAACGCAATACCAAGTATATCTTGACCTATCCNAG
____________________________________________________________
consensus GCACAATTTGGAGAACTGTGATAATCAACGCAATACCAAGTATATCTTGACCTATCCNAG

. : . : . : . : . : . :
rJMSF013C21+ CAANGGAGACACGTCTGTAAACAGCCCACATAACAGCAAATACTATGCAGAAT
____________________________________________________________
consensus CAANGGAGACACGTCTGTAAACAGCCCACATAACAGCAAATACTATGCAGAAT