Alignment Contig 2953

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF041A07+ CTNTTGGTGGTTATGATTATGATTTGCACACTTATCTCTAAGGATCAAAATTTCTNAAAA
rJMFF019D17+ TTGGTGGTTATGATTATGATTTGCACACTTATCTCTAAGGATCAAAATTTCTAAAAA
rJMFF010G05+ TTGGTGGTTATGATTATGATTTGCACACTTATCTCTAAGGATCAAAATTTCTAAAAA
rJMSF049D02+ TGATTTGCACACTTATCTCTAAGGATCAAAATTTCTAAAAA
rJMSF013N06+ GATTTGCACACTTATCTCTAAGGATCAAAATTTCTAAAAA
rJMSF027C13+ ATTTCTAAAAA
rJMSF045I24+ ACTTATCTCTAAGGATCAAAATTTCTAAAAA
rJMSF022J19+ TGATTTGCACACTTATCTCTAAGGATCAAAATTTCTAAAAA
rJMSF013M17+ GATTTGCACACTTATCTCTAAGGATCAAAATTTCTAAAAA
____________________________________________________________
consensus CTNTTGGTGGTTATGATTATGATTTGCACACTTATCTCTAAGGATCAAAATTTCTAAAAA

. : . : . : . : . : . :
rJMSF041A07+ TGACAAATAGAATAATACATTCNTTTTCTCAATCTTTAACTTCTGGATCAATCGTTGGGG
rJMFF019D17+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMFF025N22+ ATACATTCATTTTCTCATTCTTTNACTTCTGGATCAATN-TTGGGG
rJMFF010G05+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMSF049D02+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMSF013N06+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMSF046H08+ CATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMSF027C13+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMSF045I24+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMSF022J19+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
rJMSF013M17+ TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG
____________________________________________________________
consensus TGACAAATAGAATAATACATTCATTTTCTCAATCTTTAACTTCTGGATCAATC-TTGGGG

. : . : . : . : . : . :
rJMSF041A07+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMFF019D17+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMFF025N22+ TTGGGGATGANCNTTTGCANCTACTCTTGGAANAATTGAATAAGCAANTTCTGGGCAAAA
rJMFF010G05+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMSF049D02+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMSF013N06+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMSF046H08+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMSF027C13+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATCGAATAAGCAAATTCTGGGCAAAA
rJMSF045I24+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMSF022J19+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
rJMSF013M17+ TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA
____________________________________________________________
consensus TTGGGGATGACCATTTGCAGCTACTCATGGAAGAATTGAATAAGCAAATTCTGGGCAAAA

. : . : . : . : . : . :
rJMSF041A07+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACNCCGAATATGANGGCC
rJMFF019D17+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMFF025N22+ NNATNTCACAACCTCTTCCCGAACCNGNNNAACNGCCGGGCAACNCCNAATATGANGGCC
rJMFF010G05+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMSF049D02+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMSF013N06+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMSF046H08+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMSF027C13+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMSF045I24+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMSF022J19+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
rJMSF013M17+ CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC
____________________________________________________________
consensus CCATCTCACAACCTCTTCCCGAACCCGGCGAACCGCCGGGCAACGCCGAATATGAGGGCC

. : . : . : . : . : . :
rJMSF041A07+ TTGGTGAGGAGGCCGCGGNCGATGCTACAGGCNAGGGCAACGGCTCCACCCACGACGAGG
rJMFF019D17+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMFF025N22+ TTGNTGAGGANGTCGCGGNCGATGCTACAGGCGAGGGCAACGGCTCCGCCCACGACTANG
rJMFF010G05+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMSF049D02+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMSF013N06+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMSF046H08+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMSF027C13+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMSF045I24+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMSF022J19+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
rJMSF013M17+ TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG
____________________________________________________________
consensus TTGGTGAGGAGGCCGCGGTCGATGCTACAGGCGAGGGCAACGGCTCCACCCACGACGAGG

. : . : . : . : . : . :
rJMSF041A07+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCNGCTTCAGAC
rJMFF019D17+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMFF025N22+ ANCTTAAGTATGNTCCTCCCGGTTGGCTTNTCGGAAGAG
rJMFF010G05+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMSF049D02+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMSF013N06+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMSF046H08+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMSF027C13+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMSF045I24+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMSF022J19+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
rJMSF013M17+ AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC
____________________________________________________________
consensus AGCTTAGGTATGTTCCTCCCGGTTGGCTTATCGGAAGAGCCCGAGGCTTCGGCTTCAGAC

. : . : . : . : . : . :
rJMSF041A07+ ATGGNGCGTCTTANCTCCAGCGAGCGCAGGTCGTCGGTGGNGACTTTTGTGTTGATCTGA
rJMFF019D17+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMFF010G05+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMSF049D02+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMSF013N06+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMSF046H08+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMSF027C13+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMSF045I24+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMSF022J19+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
rJMSF013M17+ ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA
____________________________________________________________
consensus ATGGTGCGTCTTAGCTCCAGCGAGCGCAGGTCGTCGGTGGTGACTTTTGTGTTGATCTGA

. : . : . : . : . : . :
rJMSF041A07+ NCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMFF019D17+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCT--GTGTTTCTGATAGGCACGT
rJMFF010G05+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMSF049D02+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMSF013N06+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMSF046H08+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMSF027C13+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMSF045I24+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMSF022J19+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
rJMSF013M17+ GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT
____________________________________________________________
consensus GCCATGCAGGCGGATCGGGACAATGGGGCCTCGGTGGCTCTGTGTTTCTGATAGGCACGT

. : . : . : . : . : . :
rJMSF041A07+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMFF019D17+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMFF010G05+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMSF049D02+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMSF013N06+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMSF046H08+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMSF027C13+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMSF045I24+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMSF022J19+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
rJMSF013M17+ AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG
____________________________________________________________
consensus AGACCGGGGTCGATCTTCTTGACAGCTCCCCACATGCCCTGGCGAACGCCAAGTTTCGCG

. : . : . : . : . : . :
rJMSF041A07+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTANCACCTCGCANGCGGTCATC
rJMFF019D17+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC
rJMFF010G05+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC
rJMSF049D02+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC
rJMSF013N06+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC
rJMSF046H08+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCA
rJMSF027C13+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCA
rJMSF045I24+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC
rJMSF022J19+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC
rJMSF013M17+ ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC
____________________________________________________________
consensus ATTTCCCAAGGTATCCCCATGTCCTCGTGGTGAAAGAGTAGCACCTCGCAGGCGGTCATC

. : . : . : . : . : . :
rJMSF041A07+ TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACTAACTTGAATAATACAAATCCACA
rJMFF019D17+ TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACCAACTTGAATAATACAAATCCACA
rJMFF010G05+ TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACCAACTTGAATAATACAAATCCACA
rJMSF049D02+ TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACCAACTTGAATAATACAAATCCACA
rJMSF013N06+ TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACCAACTTGAATAATACAAATCCACA
rJMSF045I24+ TGACCATCTCTCTTGGAAGCACCTG
rJMSF022J19+ TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACCAACTTGAATAATACAAATCCACA
rJMSF013M17+ TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACCAACTTGAATAATACAAATCCACA
____________________________________________________________
consensus TGACCATCTCTCTTGGAAGCACCTGGCCTAATACACCAACTTGAATAATACAAATCCACA

. : . : . : . : . : . :
rJMSF041A07+ CGTCTCGGTTTGCTCTGTCGTGGAACATCATTCGGCACACCCTTAGTAACACAATAATAA
rJMFF019D17+ CGTCTCGGNTTGCTCTGTCGTGGAACATCATTCGGCA
rJMFF010G05+ CGTCTCGGTTTGCTCTGTCGTGGAACATCATTCGGCACACCCTTAGTAACACAATAATAA
rJMSF049D02+ CGTCTCGGTTTGCTCTGTCGTGGAACATCATTCGGCACACCCTTAGTAACACAATAATAA
rJMSF013N06+ CGTCTCGGTTTGCTCTGTCGTGGAACATCATTCGGCACACCCTTAGTAACACAATAATAA
rJMSF022J19+ CGTCTCGGTTTGCTCTGTCGTGGAACATCATTCGGCACACCCTTAGTAACACAATAATAA
rJMSF013M17+ CGTCTCGGTTTGCTCTGTCGTGGAACATCATTCGGCACACCCTTAGTAACACAATAATAA
____________________________________________________________
consensus CGTCTCGGTTTGCTCTGTCGTGGAACATCATTCGGCACACCCTTAGTAACACAATAATAA

. : . : . : . : . : . :
rJMSF041A07+ GTCTGTCCAGATTTCCAGATTCGTCGGCC
rJMFF010G05+ GTCTGTCCAGATTTCCAGATTCGTCGGCCAATGATGTATTCTCTATCG
rJMSF049D02+ GTCTGTCCAGATTTCCAGATTCGTCGGCCAATGATGTATTCTCTATCGCT
rJMSF013N06+ GTCTGTCCAGATTT
rJMSF022J19+ GTCTGTCCAGATTTCCAGATTCGTCGGCCAATGATGTATTCTCTATCGCTA
rJMSF013M17+ GTCTGTCCAGATTTCCAGATTCGTCGGCCAATGATGTATTCTCTATCGCTA
____________________________________________________________
consensus GTCTGTCCAGATTTCCAGATTCGTCGGCCAATGATGTATTCTCTATCGCTA