Alignment Contig 2834

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF019C01+ TCACTTTCACTCATCTTTAACAATTCATTATTCTACTGTTTAATACTTCAATCAACAAAA
rJMSF004L19+ GTTTANTACTTCACTCAACANAA
rJMSF018E21+ GTTTAATACTTCAATCAACAAAA
____________________________________________________________
consensus TCACTTTCACTCATCTTTAACAATTCATTATTCTACTGTTTAATACTTCAATCAACAAAA

. : . : . : . : . : . :
rJMSF019C01+ AGATATAGCAAAATAATAATCCAGCTTTCAGGATTCAGCTTTGTGAGGTTGGAAAATTGG
rJMSF004L19+ AGATATAGCAAAATAATAATCCAGCTTTCAGGATTCAGCTTTGTGAGGTTGGAAAATTGG
rJMSF018E21+ AGATATAGCAAAATAATAATCCAGCTTTCAGGATTCAGCTTTGTGAGGTTGGAAAATTGG
rJMSF001N22+ ATTGG
____________________________________________________________
consensus AGATATAGCAAAATAATAATCCAGCTTTCAGGATTCAGCTTTGTGAGGTTGGAAAATTGG

. : . : . : . : . : . :
rJMSF019C01+ CTGGCGCAAAACATGGTTTCTAGAAGAAGGGTGCAATAGGGCGTATAGTGGTGTCCCTTG
rJMSF004L19+ CTGGCGCAAAACATGGTTTCTAGAAGAAGGGTGCAATAGGGCGTATAGTGGTGTCCCTTG
rJMSF018E21+ CTGGCGCAAAACATGGTTTCTAGAAGAAGGGTGCAATAGGGCGTATAGTGGTGTCCCTTG
rJMSF001N22+ CTGGCGCAAAACATGGTTTCTAGAAGAAGGGTGCAATAGGGCGTATAGTGGTGTCCCTTG
____________________________________________________________
consensus CTGGCGCAAAACATGGTTTCTAGAAGAAGGGTGCAATAGGGCGTATAGTGGTGTCCCTTG

. : . : . : . : . : . :
rJMSF019C01+ TGGAAAGTTAAAATTAAAAAGCAGAACAAAAAAATCTGATTTAACAAAAGAGAGTGAAAA
rJMSF004L19+ TGGAAAGTTAAAATTAAAAAGCANAACAAAAAAATCTGATTTAACAAAAGANAGTGAAAA
rJMSF018E21+ TGGAAAGTTAAAATTAAAAAGCAGAACAAAAAAATCTGATTTAACAAAAGAGAGTGAAAA
rJMSF001N22+ TGGAAAGTTAAAATTAAAAAGCAGAACAAAAAAATCTGATTTAACAAAAGAGAGTGAAAA
rJMSF047F05+ AAATTAAAAAGCAGAACAAAAAAATCTGATTTAACAAAAGAGAGTGAAAA
____________________________________________________________
consensus TGGAAAGTTAAAATTAAAAAGCAGAACAAAAAAATCTGATTTAACAAAAGAGAGTGAAAA

. : . : . : . : . : . :
rJMSF019C01+ GTGAATATAATGTTTGCTTCTCCACAACCAAGTTGGTATATTACTCAATCACTTACTTCA
rJMSF004L19+ GTGAATATAATGTTTGCTTCTCCACAACCAAGTTGGTATATTACTCAATCACTTACTTCA
rJMSF018E21+ GTGAATATAATGTTTGCTTCTCCACAACCAAGTTGGTATATTACTCAATCACTTACTTCA
rJMSF001N22+ GTGAATATAATGTTTGCTTCTCCACAACCAAGTTGGTATATTACTCAATCACTTACTTCA
rJMSF047F05+ GTGAATATAATGTTTGCTTCTCCACAACCAAGTTGGTATATTACTCAATCACTTACTTCA
____________________________________________________________
consensus GTGAATATAATGTTTGCTTCTCCACAACCAAGTTGGTATATTACTCAATCACTTACTTCA

. : . : . : . : . : . :
rJMSF019C01+ CTGTCACGATCTTGATCACAGAAGCAGTTCCAATGCGGTGAAGGACCACGACAGCATCTC
rJMSF004L19+ CTGTCACGATCTTGATCACAGAAGCAGTTCCNATGCGGTGAAGGACCANGACAGCATCTC
rJMSF018E21+ CTGTCACGATCTTGATCACAGAAGCAGTTCCAATGCGGTGAAGGACCACGACAGCATCTC
rJMSF001N22+ CTGTCACGATCTTGATCACAGAAGCAGTTCCAATGCGGTGAAGGACCACGACAGCATCTC
rJMSF047F05+ CTGTCACGATCTTGATCACAGAAGCAGTTCCAATGCGGTGAAGGACCACGACAGCATCTC
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consensus CTGTCACGATCTTGATCACAGAAGCAGTTCCAATGCGGTGAAGGACCACGACAGCATCTC

. : . : . : . : . : . :
rJMSF019C01+ CTACCTCACATAATCCTTTTGCTTTGGCATGTTGGAGGGAGAACACGAGTGCCTCCTCTG
rJMSF004L19+ CTACCTCACATAATCCTTTT
rJMSF018E21+ CTACCTCACATAATCCTTTTGCTTTGGCATGTTGGAGGGAGAACACGAGTGCCTCCTCTG
rJMSF001N22+ CTACCTCACATAATCCTTTTGCTTTGGCATGTTGGAGGGAGAACACGAGTGCCTCCTCTG
rJMSF047F05+ CTACCTCACATAATCCTTTTGCTTTGGCATGTTGGAGGGAGAACACGAGTGCCTCCTCTG
____________________________________________________________
consensus CTACCTCACATAATCCTTTTGCTTTGGCATGTTGGAGGGAGAACACGAGTGCCTCCTCTG

. : . : . : . : . : . :
rJMSF019C01+ TCGACTCCTCGTGGGATGCTCTTGCAGATCCTGCACACAGGACTGGGACTAGTCCCCTGA
rJMSF018E21+ TCGACTCCTCGTGGGATGCTCTTGCAGATCCTGCACACAGGACTGGGACTAGTCCCCTGA
rJMSF001N22+ TCGACTCCTCGTGGGATGCTCTTGCAGATCCTGCACACAGGACTGGGACTAGTCCCCTGA
rJMSF047F05+ TCGACTCCTCGTGGGATGCTCTTGCAGATCCTGCACACAGGACTGGGACTAGTCCCCTGA
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consensus TCGACTCCTCGTGGGATGCTCTTGCAGATCCTGCACACAGGACTGGGACTAGTCCCCTGA

. : . : . : . : . : . :
rJMSF019C01+ AAATAAGGCTATGCCTTGCTGGGTACTCCTCGCTACATGACCAGTCAAAGGAGTCGGTCT
rJMSF018E21+ AAATAAGGCTATGCCTTGCTGGGTACTCCTCGCTACATGACCAGTCAAAGGAGTCGGTCT
rJMSF001N22+ AAATAAGGCTATGCCTTGCTGGGTACTCCTCGCTACATGACCAGTCAAAGGAGTCGGTCT
rJMSF047F05+ AAATAAGGCTATGCCTTGCTGGGTACTCCTCGCTACATGACCAGTCAAAGGAGTCGGTCT
____________________________________________________________
consensus AAATAAGGCTATGCCTTGCTGGGTACTCCTCGCTACATGACCAGTCAAAGGAGTCGGTCT

. : . : . : . : . : . :
rJMSF019C01+ TGATCTCAGGGACGACGACTGACAATATAGGCTTTCCCGGCCTGTATTTGGCTACCAGCT
rJMSF018E21+ TGATCTCAGGGACGACGACTGACAATATAGGCTTTCCCGGCCTGTATTTGGCTACCAGCT
rJMSF001N22+ TGATCTCAGGGACGACGACTGACAATATAGGCTTTCCCGGCCTGTATTTGGCTACCAGCT
rJMSF047F05+ TGATCTCAGGGACGACGACTGACAATATAGGCTTTCCCGGCCTGTATTTGGCTACCAGCT
____________________________________________________________
consensus TGATCTCAGGGACGACGACTGACAATATAGGCTTTCCCGGCCTGTATTTGGCTACCAGCT

. : . : . : . : . : . :
rJMSF019C01+ TTGCAGTACTTCCTCCCCGGGTCAGAACAAGGATGAGAGAGGCATTAGCAGAGTTAGCTG
rJMSF018E21+ TTGCAGTACTTCCTCCCCGGGTCAGAACAAGGATGAGAGAGGCATTAGCAGAGTTAGCTG
rJMSF001N22+ TTGCAGTACTTCCTCCCCGGGTCAGAACAAGGATGAGAGAGGCATTAGCAGAGTTAGCTG
rJMSF047F05+ TTGCAGTACTTCCTCCCCGGGTCAGAACAAGGATGAGAGAGGCATTAGCAGAGTTAGCTG
____________________________________________________________
consensus TTGCAGTACTTCCTCCCCGGGTCAGAACAAGGATGAGAGAGGCATTAGCAGAGTTAGCTG

. : . : . : . : . : . :
rJMSF019C01+ TTCGGACAGCAGAAGATGCAAGACTCTCTAGTGGGCTCATAGGAACTGGTGCGCTTGCCA
rJMSF018E21+ TTCGGACAGCAGAAGATGCAAGACTCTCTAGTGGGCTCATAGGAACTGGTGCGCTTGCCA
rJMSF001N22+ TTCGGACAGCAGAAGATGCAAGACTCTCTAGTGGGCTCATAGGAACTGGTGCGCTTGCCA
rJMSF047F05+ TTCGGACAGCAGAAGATGCAAGACTCTCTAGTGGGCTCATAGGAACTGGTGCGCTTGCCA
____________________________________________________________
consensus TTCGGACAGCAGAAGATGCAAGACTCTCTAGTGGGCTCATAGGAACTGGTGCGCTTGCCA

. : . : . : . : . : . :
rJMSF019C01+ CGATTCTTTTGAACACATCTGCATAATCAATTGTGCTCTCTGCTNCTATGCAAATTTTGG
rJMSF018E21+ CGATTCTTTTGAACACATCTGCATAATCAATTGTGCTCTCTGCTTCTATG
rJMSF001N22+ CGATTCTTTTGAACACATCTGCATAATCAATTGTGCTCTCTGCTTCTATGCAAATTTTGG
rJMSF047F05+ CGATTCTTTTGAACACATCTGCATAATCAATTGTGCTCTCTGCTTCTATGCAAATTTTGG
____________________________________________________________
consensus CGATTCTTTTGAACACATCTGCATAATCAATTGTGCTCTCTGCTTCTATGCAAATTTTGG

. : . : . : . : . : . :
rJMSF019C01+ CCATCGTACGTA
rJMSF001N22+ CCATCGTACGTACTGCAAGATCTGGATAAGCCCCTGCAGCTGTTTCATCACTAAGCATCA
rJMSF047F05+ CCATCGTACGTACTGCAAGATCTGGATAAGCCCCTGCAGCTGTTTCACCACTAAGCATCA
____________________________________________________________
consensus CCATCGTACGTACTGCAAGATCTGGATAAGCCCCTGCAGCTGTTTCACCACTAAGCATCA

. : . : . : . : . : . :
rJMSF001N22+ CACAGTCTGTCCCATCAAGAACGGCATTGGCAACATCTGTTGCTNCTGCA
rJMSF047F05+ CACAGTCTGTCCCATCAAGAACGGCATTGGCAACATCTGTTGCTTCTGCACGAGTTGGCC
____________________________________________________________
consensus CACAGTCTGTCCCATCAAGAACGGCATTGGCAACATCTGTTGCTTCTGCACGAGTTGGCC

. : . : . : . : . : . :
rJMSF047F05+ TTGGAGACTTGATCATCGATTCCAACATCTGGGTNGCCGTG
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consensus TTGGAGACTTGATCATCGATTCCAACATCTGGGTNGCCGTG