Alignment Contig 2833

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF019B04+ AGAGATCTTGACTTGAAAGTTGAAACTATATACAGTTAGTATACGAGTCAAGAAGAAAGA
rJMSF028P04+ ACAGTTAGTATACGAGTCAAGAAGAAAGA
rJMSF026D12+ ACAGTTAGTATACGAGTCAAGAAGAAAGA
____________________________________________________________
consensus AGAGATCTTGACTTGAAAGTTGAAACTATATACAGTTAGTATACGAGTCAAGAAGAAAGA

. : . : . : . : . : . :
rJMSF019B04+ AACAAGGGGCAGAAAGCAACCAACAAGGACCAAACCAGAGCTTATAAAAGGAGCACCAGC
rJMSF028P04+ AACAAGGGGCAGAAAGCAACCAACAAGGACCAAACCAGAGCTTATAAAAGGAGCACCAGC
rJMSF026D12+ AACAAGGGGCAGAAAGCAACCAACAAGGACCAAACCAGAGCTTATAAAAGGAGCACCAGC
rJMSF020F02+ GAGCACCAGC
____________________________________________________________
consensus AACAAGGGGCAGAAAGCAACCAACAAGGACCAAACCAGAGCTTATAAAAGGAGCACCAGC

. : . : . : . : . : . :
rJMSF019B04+ CAATTTCACCTACAAAGAAGTGTTACATTAAGCTAAGACAATG-TTGGGGGATGATACTA
rJMSF028P04+ CAATTTCACCTACAAAGAAGTGTTACATTAAGCTAAGACAATG-TTGGGGGATGATACTA
rJMSF026D12+ CAATTTCACCTACAAAGAAGTGTTACATTAAGCTAAGACAATG-TTGGGGGATGATACTA
rJMSF020F02+ CAATTTCACCTACAAAGAAGTGTTACATTAAGCTAAGACAATGGTTGGGGGATGATACTA
____________________________________________________________
consensus CAATTTCACCTACAAAGAAGTGTTACATTAAGCTAAGACAATG-TTGGGGGATGATACTA

. : . : . : . : . : . :
rJMSF019B04+ CACTACAATGGGGGTGTAGACTGTTTCAAAATGGTCATTGCGTGAGTCTCTGCATCTCAT
rJMSF028P04+ CACTACAATGGGGGTGTAGACTGTTTCAAAATGGTCATTGCGTGAGTCTCTGCATCTCAT
rJMSF026D12+ CACTACAATGGGGGTGTAGACTGTTTCAAAATGGTCATTGCGTGAGTCTCTGCATCTCAT
rJMSF020F02+ CACTACAATGGGGGTGTAGACTGTTTCAAAATGGTCATTGCGTGAGTCTCTGCATCTCAT
____________________________________________________________
consensus CACTACAATGGGGGTGTAGACTGTTTCAAAATGGTCATTGCGTGAGTCTCTGCATCTCAT

. : . : . : . : . : . :
rJMSF019B04+ TTTGGCTGTCCAAAGTCTCCATCAAAAGCGGGGGCGCAAACTGGGCAGTCCCATGGTGCT
rJMSF028P04+ TTTGGCTGTCCAAAGTCTCCATCAAAAGCGGGGGCGCAAACTGGGCAGTCCCATGGTGCT
rJMSF026D12+ TTTGGCTGTCCAAAGTCTCCATCAAAAGCGGGGGCGCAAACTGGGCAGTCCCATGGTGCT
rJMSF020F02+ TTTGGCTGTCCAAAGTCTCCATCAAAAGCGGGGGCGCAAACTGGGCAGTCCCATGGTGCT
____________________________________________________________
consensus TTTGGCTGTCCAAAGTCTCCATCAAAAGCGGGGGCGCAAACTGGGCAGTCCCATGGTGCT

. : . : . : . : . : . :
rJMSF019B04+ CCTCCGAGTCTTGGCAAAACGAAAGGATTATAGTATCGATCGACATCTCAACCACCGAGA
rJMSF028P04+ CCTCCGAGTCTTGGCAAAACGAAAGGATTATAGTATCGATCGACATCTCAACCACCGAGA
rJMSF026D12+ CCTCCGAGTCTTGGCAAAACGAAAGGATTATAGTATCGATCGACATCTCAACCACCGAGA
rJMSF020F02+ CCTCCGAGTCTTGGCAAAACGAAAGGATTATAGTATCGATCGACATCTCAACCACCGAGA
____________________________________________________________
consensus CCTCCGAGTCTTGGCAAAACGAAAGGATTATAGTATCGATCGACATCTCAACCACCGAGA

. : . : . : . : . : . :
rJMSF019B04+ AGAAAAGGGTCGCCACAACATAGCCAATCCCCCAGCACACCAGCACAGGAAATAGCGGGG
rJMSF028P04+ AGAAAAGGGTCGCCACAACATAGCCNATCCCCCAGCACACCAGCACAGGAAATAGCGGGG
rJMSF026D12+ AGAAAAGGGTCGCCACAACATAGCCAATCCCCCAGCACACCAGCACAGGAAATAGCGGGG
rJMSF020F02+ AGAAAAGGGTCGCCACAACATAGCCAATCCCCCAGCACACCAGCACAGGAAATAGCGGGG
____________________________________________________________
consensus AGAAAAGGGTCGCCACAACATAGCCAATCCCCCAGCACACCAGCACAGGAAATAGCGGGG

. : . : . : . : . : . :
rJMSF019B04+ ACGAGATCTTGTGATTCGAGGACTTGTACTTGTGAGTATCCAGCATGAGAAAAGCAAACA
rJMSF028P04+ ACGAGATCTTGTGATTCGAGGACTTGTACTTGTGAGTATCCAGCATGAGAAAAGCAAACA
rJMSF026D12+ ACGAGATCTTGTGATTCGAGGACTTGTACTTGTGAGTATCCAGCATGAGAAAAGCAAACA
rJMSF020F02+ ACGAGATCTTGTGATTCGAGGACTTGTACTTGTGAGTATCCAGCATGAGAAAAGCAAACA
____________________________________________________________
consensus ACGAGATCTTGTGATTCGAGGACTTGTACTTGTGAGTATCCAGCATGAGAAAAGCAAACA

. : . : . : . : . : . :
rJMSF019B04+ AAGCACTCACAAGACTCACGAGTAGCTTCCCGAGAAAGAGAATAACATCGCCAATCACAT
rJMSF028P04+ AAGCACTCACAAGACTCACGAGTAGCTTCCCGAGAAAGAGAATAACATCGCCAATCACAT
rJMSF026D12+ AAGCACTCACAAGACTCACGAGTAGCTTCCCGAGAAAGAGAATAACATCGCCAATCACAT
rJMSF020F02+ AAGCACTCACAAGACTCACGAGTAGCTTCCCGAGAAAGAGAATAACATCGCCAATCACAT
____________________________________________________________
consensus AAGCACTCACAAGACTCACGAGTAGCTTCCCGAGAAAGAGAATAACATCGCCAATCACAT

. : . : . : . : . : . :
rJMSF019B04+ TCACCTTTCCTATCCGAAGCACGTTACTTATAATGAGTTCTGTTGCAATTTCAGAAGCTT
rJMSF028P04+ TCACCTTTCCTATCCGAAGCACGTTACTTATAATGAGTTCTGTTGCAATTTCAGAAGCTT
rJMSF026D12+ TCACCTTTCCTATCCGAAGCACGTTACTTATAATGAGTTCTGTTGCAATTTCAGAAGCTT
rJMSF020F02+ TCACCTTTCCTATCCGAAGCACGTTACTTATAATGAGTTCTGTTGCAATTTCAGAAGCTT
____________________________________________________________
consensus TCACCTTTCCTATCCGAAGCACGTTACTTATAATGAGTTCTGTTGCAATTTCAGAAGCTT

. : . : . : . : . : . :
rJMSF019B04+ TGAAGAAACTCTTCCCTGTAATAGCTATCATTATATAAGCATTACGGTTCACAGATTTCA
rJMSF028P04+ TGAAGAAACTCTTCCCTGTAATAGCTATCATTATATAAGCATTACGGTTCACAGATTTCA
rJMSF026D12+ TGAAGAAACTCTTCCCTGTAATAGCTATCATTATATAAGCATTACGGTTCACAGATTTCA
rJMSF020F02+ TGAAGAAACTCTTCCCTGTAATAGCTATCATTATATAAGCATTACGGTTCACAGATTTCA
____________________________________________________________
consensus TGAAGAAACTCTTCCCTGTAATAGCTATCATTATATAAGCATTACGGTTCACAGATTTCA

. : . : . : . : . : . :
rJMSF019B04+ TGATCCAGCTAACACCTCTCAAGCAACCCTGAGAAGTATGAAATGCCATCTTTCCCGGCC
rJMSF028P04+ TGATCCAGCTNACACCTCTCAAGCAACCCTGAGAAGTATGAAATGCCATCTTTCCCGGCC
rJMSF026D12+ TGATCCAGCTAACACCTCTCAAGCAACCCTGAGAAGTATGAAATGCCATCTTTCCCGGCC
rJMSF020F02+ TGATCCAGCTAACACCTCTCAAGCAACCCTGAGAAGTATGAAATGCCATCTTTCCCGGCC
____________________________________________________________
consensus TGATCCAGCTAACACCTCTCAAGCAACCCTGAGAAGTATGAAATGCCATCTTTCCCGGCC

. : . : . : . : . : . :
rJMSF019B04+ AGCTCTCCGGTGTAGAATTAGAAGTTTTAAGCCTGCGGCGAATTGCTCC
rJMSF028P04+ AGCTCTCCGGT
rJMSF026D12+ AGCTCTCCGGTGTAGAATTAGAAGTTTTAAGCCTGCGGCGAATTGCTCC
rJMSF020F02+ AGCTCTCCGGTGTAGAATTAGAAGTTTTAAGCCTGCGGCGAATTGCTCCAAGTATGAAAC
____________________________________________________________
consensus AGCTCTCCGGTGTAGAATTAGAAGTTTTAAGCCTGCGGCGAATTGCTCCAAGTATGAAAC

. : . : . : . : . : . :
rJMSF020F02+ GGATAGGCTCGATAAACGAANCCAACACAGAACCAAGA
____________________________________________________________
consensus GGATAGGCTCGATAAACGAANCCAACACAGAACCAAGA