Alignment Contig 2787

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF011I04+ TTTTTGGGCAAAAACATACAAAGATAAACGGTACTAAAAAGCAAAAAGACCATGGTTATG
rJMSF044N17+ AACGGTACTAAAAAGCAAAAAGACCATGNTTATG
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consensus TTTTTGGGCAAAAACATACAAAGATAAACGGTACTAAAAAGCAAAAAGACCATGGTTATG

. : . : . : . : . : . :
rJMSF011I04+ AGTTTTGTTTGTAAGTCGTCTGTTGATTCCTTAATGGAGTAGTAGTTTGTGCACAATATA
rJMSF044N17+ AGTTT-GTTTGTAAGTCGTCTGTTGATTCCTTAATGGAGTAGTAGTTTGTGCACAATATA
rJMSF013E12+ TTTGTTTGTAAGTCGTCTGTTGATTCCTTAATGGAGTAGTAGTTTGTGCACAATATA
rJMSF023K23+ TGTGCACAATATA
rJMSF034A03+ GTGCACAATATA
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consensus AGTTTTGTTTGTAAGTCGTCTGTTGATTCCTTAATGGAGTAGTAGTTTGTGCACAATATA

. : . : . : . : . : . :
rJMSF011I04+ ACATAATGCGCAACG-TAACAGTTGAGTTCATATATATGTCTGCGTGGATGATCAATGAT
rJMSF044N17+ ACATAATGCGCAACG-TAACAGTTGAGTTCATATATATGTCTGCGTGGATGATCAATGAT
rJMSF013E12+ ACATAATGCGCAACG-TAACAGTTGAGTTCATATATATGTCTGCGTGGATGATCAATGAT
rJMSF023K23+ ACATAATGCGCAACG-TAACAGTTGAGTTCATATATATGTCTGCGTGGATGATCAATGAT
rJMSF034A03+ ACATAATGCGCAACGGTAACAGTTGAGTTCATATATATGTCTGCGTGGATGATCAATGAT
rJMSF036C03+ GTTGAGTTCATATATATGTCTGCGTGGATGATCAATGAT
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consensus ACATAATGCGCAACG-TAACAGTTGAGTTCATATATATGTCTGCGTGGATGATCAATGAT

. : . : . : . : . : . :
rJMSF011I04+ CATACTTGATATTAAAGTTGAATCCTAAAATGTCGGGTCTCTTCACCGCGGTTAAGCGAG
rJMSF044N17+ CATACTTGATATTAAAGTTGAATCCTAAAATGTCGGGTCTCTTCACCGCGGTTAAGCGAG
rJMSF013E12+ CATACTTGATATTAAAGTTGAATCCTAAAATGTCGGGTCTCTTCACCGCGGTTAAGCGAG
rJMSF023K23+ CATACTTGATATTAAAGTTGAATCCTAAAATGTCGGGTCTCTTCACCGCGGTTAAGCGAG
rJMSF034A03+ CATACTTGATATTAAAGTTGAATCCTAAAATGTCGGGTCTCTTCACCGCGGTTAAGCGAG
rJMSF036C03+ CATACTTGATATTAAAGTTGAATCCTAAAATGTCGGGTCTCTTCACCGCGGTTAAGCGAG
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consensus CATACTTGATATTAAAGTTGAATCCTAAAATGTCGGGTCTCTTCACCGCGGTTAAGCGAG

. : . : . : . : . : . :
rJMSF011I04+ AAAGTTGAAGTGGCAGTCCTGTTACCGTACTCCACGCTTACTTTGTATTCACCTAGGAAT
rJMSF044N17+ AAAGTTGAAGTGGCAGTCCTGTTACCGTACTCCACGCTTACTTTGTATTCACCTAGGAAT
rJMSF013E12+ AAAGTTGAAGTGGCAGTCCTGTTACCGTACTCCACGCTTACTTTGTATTCACCTAGGAAT
rJMSF023K23+ AAAGTTGAAGTGGCAGTCCTGTTACCGTACTCCACGCTTACTTTGTATTCACCTAGGAAT
rJMSF034A03+ AAAGTTGAAGTGGCAGTCCTGTTACCGTACTCCACGCTTACTTTGTATTCACCTAGGAAT
rJMSF036C03+ AAAGTTGAAGTGGCAGTCCTGTTACCGTACTCCACGCTTACTTTGTATTCACCTAGGAAT
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consensus AAAGTTGAAGTGGCAGTCCTGTTACCGTACTCCACGCTTACTTTGTATTCACCTAGGAAT

. : . : . : . : . : . :
rJMSF011I04+ CCCATGAAACTGTAAGAACCATGTTCGTCTGTTCCTCCTTCCAAGGTTTGGGTTTGCCAT
rJMSF044N17+ CCCATGAAACTGTAAGAACCATGTTCGTCTGTTCCTCCTTCCAAGGTTTGGGTTTGCCAT
rJMSF013E12+ CCCATGAAACTGTAAGAACCATGTTCGTCTGTTCCTCCTTCCAAGGTTTGGGTTTGCCAT
rJMSF023K23+ CCCATGAAACTGTAAGAACCATGTTCGTCTGTTCCTCCTTCCAAGGTTTGGGTTTGCCAT
rJMSF034A03+ CCCATGAAACTGTAAGAACCATGTTCGTCTGTTCCTCCTTCCAAGGTTTGGGTTTGCCAT
rJMSF036C03+ CCCATGAAACTGTAAGAACCATGTTCGTCTGTTCCTCCTTCCAAGGTTTGGGTTTGCCAT
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consensus CCCATGAAACTGTAAGAACCATGTTCGTCTGTTCCTCCTTCCAAGGTTTGGGTTTGCCAT

. : . : . : . : . : . :
rJMSF011I04+ TCCTTTAGCAGATTGTCCACAACATCTCCAGCTGGCAGATTATTCAAGTTATTATCAGTA
rJMSF044N17+ TCCTTTAGCAGATTGTCCACAACATCTCCAGCTGGCAGATTATTCAAGTTATTATCAGTA
rJMSF013E12+ TCCTTTAGCAGATTGTCCACAACATCTCCAGCTGGCAGATTATTCAAGTTATTATCAGTA
rJMSF023K23+ TCCTTTAGCAGATTGTCCACAACATCTCCAGCTGGCAGATTATTCAAGTTATTATCAGTA
rJMSF034A03+ TCCTTTAGCAGATTGTCCACAACATCTCCAGCTGGCAGATTATTCAAGTTATTATCAGTA
rJMSF036C03+ TCCTTTAGCAGATTGTCCACAACATCTCCAGCTGGCAGATTATTCAAGTTATTATCAGTA
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consensus TCCTTTAGCAGATTGTCCACAACATCTCCAGCTGGCAGATTATTCAAGTTATTATCAGTA

. : . : . : . : . : . :
rJMSF011I04+ AGGCACATTTGGAAGCATCCTTTTGGGCTTATGGCTGTCCACAGCATTATCCCACTCACT
rJMSF044N17+ AGGCACATTTGGAAGCATCCTTTTGGGCTTATGGCTGTCCACAGCATTATCCCACTCACT
rJMSF013E12+ AGGCACATTTGGAAGCATCCTTTTGGGCTTATGGCTGTCCACAGCATTATCCCACTCACT
rJMSF023K23+ AGGCACATTTGGAAGCATCCTTTTGGGCTTATGGCTGTCCACAGCATTATCCCACTCACT
rJMSF034A03+ AGGCACATTTGGAAGCATCCTTTTGGGCTTATGGCTGTCCACAGCATTATCCCACTCACT
rJMSF036C03+ AGGCACATTTGGAAGCATCCTTTTGGGCTTATGGCTGTCCACAGCATTATCCCACTCACT
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consensus AGGCACATTTGGAAGCATCCTTTTGGGCTTATGGCTGTCCACAGCATTATCCCACTCACT

. : . : . : . : . : . :
rJMSF011I04+ GCAGGATGTGAAAAAACTTCTCTCAGAACTGTTTCCAGATAGATTGCCTGTGTTTCTTGG
rJMSF044N17+ GCAGGATGTGAAAAAACTTCTCTCAGAACTGTTTCCAGATAGATTGCCTGTGTTTCTTGG
rJMSF013E12+ GCAGGATGTGAAAAAACTTCTCTCAGAACTGTTTCCAGATAGATTGCCTGTGTTTCTTGG
rJMSF023K23+ GCAGGATGTGAAAAAACTTCTCTCAGAACTGTTTCCAGATAGATTGCCTGTGTTTCTTGG
rJMSF034A03+ GCAGGATGTGAAAAAACTTCTCTCAGAACTGTTTCCAGATAGATTGCCTGTGTTTCTTGG
rJMSF036C03+ GCAGGATGTGAAAAAACTTCTCTCAGAACTGTTTCCAGATAGATTGCCTGTGTTTCTTGG
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consensus GCAGGATGTGAAAAAACTTCTCTCAGAACTGTTTCCAGATAGATTGCCTGTGTTTCTTGG

. : . : . : . : . : . :
rJMSF011I04+ CCGTATTTCTTGTTAATGTCGATTTCTGTGAGCCAAATGGGGAGTCTCAGTGTGGCCAGT
rJMSF044N17+ CCGTATTTCTTGTTAATGTCGATTTCTGTGAGCCAAATGGGGAGTCTCAGTGTGGCCAGT
rJMSF013E12+ CCGTATTTCTTGTTAATGTCGATTTCTGTGAGCCAAATGGGGAGTCTCAGTGTGGCCAGT
rJMSF023K23+ CCGTATTTCTTGTTAATGTCGATTTCTGTGAGCCAAATGGGAAGTCTCAGTGTGGCCAGT
rJMSF034A03+ CCGTATTTCTTGTTAATGTCGATTTCTGTGAGCCAAATGGGAAGTCTCAGTGTGGCCAGT
rJMSF036C03+ CCGTATTTCTTGTTAATGTCGATTTCTGTGAGCCAAATGGGAAGTCTCAGTGTGGCCAGT
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consensus CCGTATTTCTTGTTAATGTCGATTTCTGTGAGCCAAATGGGAAGTCTCAGTGTGGCCAGT

. : . : . : . : . : . :
rJMSF011I04+ TTATCAAGAATTGCTCTTATCAGAGGAGGGTTGGGAGCTGAGAAATGACCCTCCAGCCCA
rJMSF044N17+ TTATCAAGAATTGCTCTTATCAGAGGAGGGTTGGGAGCTGANAAATGACCCTCCAGCCCA
rJMSF013E12+ TTATCAAGAATTGCTCTTATCAGAGGAGGGTTGGGAGCTGAGAAATGACCCTCCAGCCCA
rJMSF023K23+ TTATCAAGAATTGCTCTTATCAGAGGAGGGTTGGGAGCTGAGAAATGACCCTCCAGCCCA
rJMSF034A03+ TTATCAAGAATTGCTCTTATCAGAGGAGGGTTGGGAGCTGAGAAATGACCCTCCAGCCCA
rJMSF036C03+ TTATCAAGAATTGCTCTTATCAGAGGAGGGTTGGGAGCTGAGAAATGACCCTCCAGCCCA
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consensus TTATCAAGAATTGCTCTTATCAGAGGAGGGTTGGGAGCTGAGAAATGACCCTCCAGCCCA

. : . : . : . : . : . :
rJMSF011I04+ ATCCCATCCATTGATATTCCGCCTTGTTTC-AGTTCCTTCATCTTAGAGATGTATGTGTC
rJMSF044N17+ ATCCCATCCATTGATATTCCGCCTTGTTTCCAGTTCCTTCATCTTAGAGATGTATGTGTC
rJMSF013E12+ ATCCCATCCATTGATATTCCGCCTTGTTTC-AGTTCCTTCATCTTANAGATGTATGTGTC
rJMSF023K23+ ATCCCATCCATTGATATTCCGCCTTGTTTC-AGTTCCTTCATCTTAGAGATGTATGTGTC
rJMSF034A03+ ATCCCATCCATTGATATTCCGCCTTGTTTC-AGTTCCTTCATCTTAGAGATGTATGTGTC
rJMSF036C03+ ATCCCATCCATTGATATTCCGCCTTGTTTC-AGTTCCTTCATCTTAGAGATGTATGTGTC
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consensus ATCCCATCCATTGATATTCCGCCTTGTTTC-AGTTCCTTCATCTTAGAGATGTATGTGTC

. : . : . : . : . : . :
rJMSF011I04+ CACAGTGGACTTGGGATCAGAACATGTTTCCACCACATTGAAGTCNTTCATGAACAA
rJMSF044N17+ CACAGTGGAC
rJMSF013E12+ CACAGTGGACTTGGGATCANAACATGTTTCCACCACATTGAAGTCATTCATGAACAAGGT
rJMSF023K23+ CACAGTGGACTTGGGATCAGAACATGTTTCCACCACATTGAAGTCATTCATGAACAAGGT
rJMSF034A03+ CACAGTGGACTTGGGATCAGAACATGTTTCCACCACATTGAAGTCATTCATGAACAAGGN
rJMSF036C03+ CACAGTGGACTTGGGATCAGAACATGTTTCCACCACATTGAAGTCATTCATGAACAAGGT
____________________________________________________________
consensus CACAGTGGACTTGGGATCAGAACATGTTTCCACCACATTGAAGTCATTCATGAACAAGGT

. : . : . : . : . : . :
rJMSF013E12+ TGCGAGTGGGTCTGCTTCG
rJMSF023K23+ TGCGAGTGGGTCTGCTTCGTGTGCTGTCTTGAAG
rJMSF034A03+ TGCGAGTGGGTCTGCTTCGTGTGCTGTCTTGAAG
rJMSF036C03+ TGCGAGTGGGTCTGCTTCGTGTGCTGTCTTGAAGAATTCTAAGGTGGCGTCGGGTCCCAG
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consensus TGCGAGTGGGTCTGCTTCGTGTGCTGTCTTGAAGAATTCTAAGGTGGCGTCGGGTCCCAG

. : . : . : . : . : . :
rJMSF036C03+ CCGCTGCTCGTACAGATCGAAATGCAGCATTTCGTTGCTGACATC
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consensus CCGCTGCTCGTACAGATCGAAATGCAGCATTTCGTTGCTGACATC