Alignment Contig 2726

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF049H23+ CAATACATGAGTAATGACACGAGACTTTTTTATTTATTAAATGGGCTGCTCAAACTTCAT
rJMSF039E17+ ATGACACGAGACTTTTTTATTTATTAAATGGGCTGCTCAAACTTCAT
rJMFF013I02+ ATGACACGAGACTTTTTTATTTATTAAATGGGCTGCTCAAACTTCAT
rJMFF029J15+ AACTTCAT
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consensus CAATACATGAGTAATGACACGAGACTTTTTTATTTATTAAATGGGCTGCTCAAACTTCAT

. : . : . : . : . : . :
rJMFF049H23+ AAATTGACACTTTAGCCCCCATTACATGCTTTAATTTTGTTATTGGAATTAATTACATAC
rJMSF039E17+ AAATTGACACTTTAGCCCCCATTACATGCTTTAATTTTGTTATTGGAATTAATTACATAC
rJMFF013I02+ AAATTGACACTTTAGCCCCCATTACATGCTTTAATTTTGTTATTGGAATTAATTACATAC
rJMFF020O19+ AATTGACACTTTAGCCCCCATTACATGCTTTAATTTTGTTATTGGAATTAATTACATAC
rJMSF032O23+ CTTTAATTTTGTTATTGGAATTAATTACATAC
rJMFF029J15+ AAATTGACACTTTAGCCCCCATTACATGCTTTAATTTTGTTATTGGAATTAATTACATAC
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consensus AAATTGACACTTTAGCCCCCATTACATGCTTTAATTTTGTTATTGGAATTAATTACATAC

. : . : . : . : . : . :
rJMFF049H23+ ATGAACATGATCCTTAGCTTGTTCATGCAATATAATGCATGGCGCGCAATGACTAAATAC
rJMSF039E17+ ATGAACATGATCCTTAGCTTGTTCATGCAATATAATGCATGGCGCGCAATGACTAAATAC
rJMFF013I02+ ATGAACATGATCCTTAGCTTGTTCATGCAATATAATGCATGGCGCGCAATGACTAAATAC
rJMFF020O19+ ATGAACATGATCCTTAGCTTGTTCATGCAATATAATGCATGGCGCGCAATGACTAAATAC
rJMSF032O23+ ATGAACATGATCCTTAGCTTGTTCATGCAATATAATGCATGGCGCGCAATGACTAAATAC
rJMFF029J15+ ATGAACATGATCCTTAGCTTGTTCATGCAATATAATGCATGGCGCGCAATGACTAAATAC
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consensus ATGAACATGATCCTTAGCTTGTTCATGCAATATAATGCATGGCGCGCAATGACTAAATAC

. : . : . : . : . : . :
rJMFF049H23+ TTCACTTTAGTAGCTAGTCTTGAATGGTCTGTAAAGCTTAAGATCAAGAACCACACCGGC
rJMSF039E17+ TTCACTTTAGTAGCTAGTCTTGAATGGTCTGTAAAGCTTAAGATCAAGAACCACACCGGC
rJMFF013I02+ TTCACTTTAGTAGCTAGTCTTGAATGGTCTGTAAAGCTTAAGATCAAGAACCACACCGGC
rJMFF020O19+ TTCACTTTAGTAGCTAGTCTTGAATGGTCTGTAAAGCTTAAGATCAAGAACCACACCGGC
rJMSF032O23+ TTCACTTTAGTAGCTAGTCTTGAATGGTCTGTAAAGCTTAAGATCAAGAACCACACCGGC
rJMFF029J15+ TTCACTTTAGTAGCTAGTCTTGAATGGTCTGTAAAGCTTAAGATCAAGAACCACACCGGC
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consensus TTCACTTTAGTAGCTAGTCTTGAATGGTCTGTAAAGCTTAAGATCAAGAACCACACCGGC

. : . : . : . : . : . :
rJMFF049H23+ GAACGAACCGGCGGCCGCCGCGAGCGACACCGCCAAGCAAGCGCCGCTCAGCATTTGGAG
rJMSF039E17+ GAACGAACCGGCGGCCGCCGCGAGCGACACCGCCAAGCAAGCGCCGCTCAGCATTTGGAG
rJMFF013I02+ GAACGAACCGGCGGCCGCCGCGAGCGACACCGCCAAGCAAGCGCCGCTCAGCATTTGGAG
rJMFF020O19+ GAACGAACCGGCGGCCGCCGCGAGCGACACCGCCAAGCAAGCGCCGCTCAGCATTTGGAG
rJMSF032O23+ GAACGAACCGGCGGCCGCCGCGAGCGACACCGCCAAGCAAGCGCCGCTCAGCATTTGGAG
rJMFF029J15+ GAACGAACCGGCGGCCGCCGCGAGCGACACCGCCAAGCAAGCGCCGCTCAGCATTTGGAG
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consensus GAACGAACCGGCGGCCGCCGCGAGCGACACCGCCAAGCAAGCGCCGCTCAGCATTTGGAG

. : . : . : . : . : . :
rJMFF049H23+ GCAAATCCACCGGGTGCTCCACTTGGGTATTTC-CTTCTGTGAAATGTACATCCTTACCG
rJMSF039E17+ GCAAATCCACCGGGTGCTCCACTTGGGTATTTT-CTTCTGTGAAATGTACATCCTTACCG
rJMFF013I02+ GCAAATCCACCGGGTGCTCCACTTGGGTATTTTTCTTCTGTGAAATGTACATCCTTACCG
rJMFF020O19+ GCAAATCCACCGGGTGCTCCACTTGGGTATTTT-CTTCTGTGAAATGTACATCCTTACCG
rJMSF032O23+ GCAAATCCACCGGGTGCTCCACTTGGGTATTTT-CTTCTGTGAAATGTACATCCTTACCG
rJMFF029J15+ GCAAATCCACCGGGTGCTCCACTTGGGTATTTT-CTTCTGTGAAATGTACATCCTTACCG
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consensus GCAAATCCACCGGGTGCTCCACTTGGGTATTTT-CTTCTGTGAAATGTACATCCTTACCG

. : . : . : . : . : . :
rJMFF049H23+ GAAAATACACGGTCAACGGCCAGAACCCGAACGCCCCGAGAATCCCAACGACGTCGTTGA
rJMSF039E17+ GAAAATACACGGTCAACGGCCAGAACCCGAACGCCCCGAGAATCCCAACGACGTCGTTGA
rJMFF013I02+ GAAAATACACGGTCAACGGCCAGAACCCGAACGCCCCGAGAATCCCAACGACGTCGTTGA
rJMFF020O19+ GAAAATACACGGTCAACGGCCAGAACCCGAACGCCCCGAGAATCCCAACGACGTCGTTGA
rJMSF032O23+ GAAAATACACGGTCAACGGCCAGAACCCGAACGCCCCGAGAATCCCAACGACGTCGTTGA
rJMFF029J15+ GAAAATACACGGTCAACGGCCAGAACCCGAACGCCCCGAGAATCCCAACGACGTCGTTGA
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consensus GAAAATACACGGTCAACGGCCAGAACCCGAACGCCCCGAGAATCCCAACGACGTCGTTGA

. : . : . : . : . : . :
rJMFF049H23+ AGAAAGGCAGCAACATGGATATGACGGTGGTTAAGAGCACGAACGCCGTGCGCCACAGCA
rJMSF039E17+ AGAAAGGCAGCAACATGGATATGACGGTGGTTAAGAGCACGAACGCCGTGCGCCACAGCA
rJMFF013I02+ AGAAAGGCAGCAACATGGATATGACGGTGGTTAAGAGCACGAACGCCGTGCGCCACAGCA
rJMFF020O19+ AGAAAGGCAGCAACATGGATATGACGGTGGTTAAGAGCACGAACGCCGTGCGCCACAGCA
rJMSF032O23+ AGAAAGGCAGCAACATGGATATGACGGTGGTTAAGAGCACGAACGCCGTGCGCCACAGCA
rJMFF029J15+ AGAAAGGCAGCAACATGGATATGACGGTGGTTAAGAGCACGAACGCCGTGCGCCACAGCA
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consensus AGAAAGGCAGCAACATGGATATGACGGTGGTTAAGAGCACGAACGCCGTGCGCCACAGCA

. : . : . : . : . : . :
rJMFF049H23+ ACCGGAAAGTATTCAGTTTATACGGGTACCCG
rJMSF039E17+ ACCGGAAAGTATTCAGTTTATACGGGTACCCGAACCCGGGGATTTTCAGGTTGATTTCCT
rJMFF013I02+ ACCGGAAAGTATTCAGTTTATACGGGTACCCGAACCCGGGGATTTTCAGGTTGATTTCCT
rJMFF020O19+ ACCGGAAAGTATTCAGTTTATACGGGTACCCGAACCCGGGGATTTTCAGGTTGATTTCCT
rJMSF032O23+ ACCGGAAAGTATTCAGTTTATACGGGTACCCGAACCCGGGGATTTTCAGGTTGATTTCCT
rJMFF029J15+ ACCGGAAAGTATTCAGTTTATACGGGTACCCGAACCCGGGGATTTTCAGGTTGATTTCCT
JMFS142G05- GGGTACCCGAACCCGGGGATTTTCAGGTTGATTTCCT
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consensus ACCGGAAAGTATTCAGTTTATACGGGTACCCGAACCCGGGGATTTTCAGGTTGATTTCCT

. : . : . : . : . : . :
rJMSF039E17+ TGGTGATG-ATCTCGCTGTCGGGCCATTTCGCCCCGACCCATTTCTCGATGAATGCAAAC
rJMFF013I02+ TGGTGATGGATCTCGCTGTCGGGCCATTTCGCCCCGACCCATTTCTCGATGAATGCAAAC
rJMFF020O19+ TGGTGATG-ATCTCGCTGTCGGGCCATTTCGCCCCGACCCATTTCTCGATGAATGCAAAC
rJMSF032O23+ TGGTGATG-ATCTCGCCGTCGGGCCATTTCGCCCCGACCCATTTCTCGATGAATGCAAAC
rJMFF029J15+ TGGTGATGGATCTCGCTGTCGGGCCATTTCGCCCCGACCCATTTCTCGATGAATGCAAAC
JMFS142G05- TGGTGATG-ATCTCGCTGTCGGGCCATTTCGCCCCGACCCATTTCTCGATGAATGCAAAC
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consensus TGGTGATG-ATCTCGCTGTCGGGCCATTTCGCCCCGACCCATTTCTCGATGAATGCAAAC

. : . : . : . : . : . :
rJMSF039E17+ AGCGGCTGGCAGTACACTTGGTAGGCTCCCACAAGGTGGATGACGATGGCGGCGTTGGCG
rJMFF013I02+ AGCGGCTGGCAGTACACTTGGTAGGCTCCCACAANGTGGATGACGATGGCGGCGTTGGCG
rJMFF020O19+ AGCGGCTGGCAGTACACTTGGTAGGCTCCCACAAGGTGGATGACGATGGCGGCGTTGGCG
rJMSF032O23+ AGCGGCTGGCAGTACACTTGGTAGGCTCCCACAAGGTGGATGACGATGGCGGCGTTGGCG
rJMFF029J15+ AGCGGCTGGCAGTACACTTGGTAGGCTCCCACAAGGTGGATGACGATGGCGGCGTTGGCG
JMFS142G05- AGCGGCTGGCAGTACACTTGGTAGGCTCCCACAAGGTGGATGACGATGGCGGCGTTGGCG
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consensus AGCGGCTGGCAGTACACTTGGTAGGCTCCCACAAGGTGGATGACGATGGCGGCGTTGGCG

. : . : . : . : . : . :
rJMSF039E17+ ATATCCAGGAGCCAAAAAAGGGTTGTAGAACCCGAACCCGGTTAAGAGATTCCCGGGCGC
rJMFF013I02+ ATATCCAGG
rJMFF020O19+ ATATCCAGGAGCCAAAAA-GGGTTGTAGAACCCGAACCCGGTTAAGAGATTCCCGGGCGC
rJMSF032O23+ ATATCCAGGAGCCAAAAA-GGGTTGTAGAACCCGAAC
rJMFF029J15+ ATATCCAGGAGCCAAAAA-GGGTTGTAGAACCCGAACCCGGTTAAGAGATTCCCGGGCGC
JMFS142G05- ATATCCAGGAGCCAAAAA-GGGTTGTAGAACCCGAACCCGGTTAAGAGATTCCCGGGCGC
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consensus ATATCCAGGAGCCAAAAA-GGGTTGTAGAACCCGAACCCGGTTAAGAGATTCCCGGGCGC

. : . : . : . : . : . :
rJMSF039E17+ ATCATCCCCGAATGCTGCGTAACCCATGCACCCGCATAGCATGTAGAAAGTTGTAGTCAC
rJMFF020O19+ ATCATCCCCGAATGCTGCGTAACCCATGCACCCGCATAGCATGTANAAAGTTGTAGTCAC
rJMFF029J15+ ATCATCCCCGAATGCTGCGTAACCCATGCACCCGCATAGCATGTAGAAAGTTGTAGTCAC
JMFS142G05- ATCATCCCCGAATGCTGCGTAACCCATGCACCCGCATAGCATGTAGAAAGTTGTAGTCAC
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consensus ATCATCCCCGAATGCTGCGTAACCCATGCACCCGCATAGCATGTAGAAAGTTGTAGTCAC

. : . : . : . : . : . :
rJMSF039E17+ TATAGTGCTGAACAGGCTAGCTTTCCTCATCGTCTTTGATTCTGACGGCGGAGATTTCAC
rJMFF020O19+ TATAGTGCTGAACA
rJMFF029J15+ TATAGTGCTGAACAGGCTAGCTTTCCTCATCGTCTTTGATTCTGACG
JMFS142G05- TATAGTGCTGAACAGGCTAGCTTTCCTCATCGTCTTTGATTCTGACGGCGGAGATTTCAC
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consensus TATAGTGCTGAACAGGCTAGCTTTCCTCATCGTCTTTGATTCTGACGGCGGAGATTTCAC

. : . : . : . : . : . :
rJMSF039E17+ CGTGTCCTGAA
JMFS142G05- CGTGTCCTGAATTTCAATAAGAATGATGGAATATGAATAGGCAAAAGCAATGTCTCCAAG
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consensus CGTGTCCTGAATTTCAATAAGAATGATGGAATATGAATAGGCAAAAGCAATGTCTCCAAG

. : . : . : . : . : . :
JMFS142G05- AGCTTGAAAACTCCTCCATATTTTTTGGGTTTCAGTAACAGTTCCAATGCTAATGCCAGT
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consensus AGCTTGAAAACTCCTCCATATTTTTTGGGTTTCAGTAACAGTTCCAATGCTAATGCCAGT

. : . : . : . : . : . :
JMFS142G05- GAGGCTGCCCTTGAAAGCCCCGTTAGCAACAACTTGTGCAATTCCAAGCCCCAATCCAAT
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consensus GAGGCTGCCCTTGAAAGCCCCGTTAGCAACAACTTGTGCAATTCCAAGCCCCAATCCAAT

. : . : . : . : . : . :
JMFS142G05- TCCAGAGTAGGTAAAGGACATAACAGCAGCAACTATTGAGAGCCACCATATTTGATCAAA
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consensus TCCAGAGTAGGTAAAGGACATAACAGCAGCAACTATTGAGAGCCACCATATTTGATCAAA

. : . : . : . : . : . :
JMFS142G05- ATCCGGGATTTGAGATAGAATAATTTCTATAATTCCAAAAGCAATCATGTA
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consensus ATCCGGGATTTGAGATAGAATAATTTCTATAATTCCAAAAGCAATCATGTA