Alignment Contig 2715

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF048D07+ ACCCTGGAGAGTTTTTTTTTTTTTTTTTAGCTGAGAAGTAATATATATATATGAATGAGA
rJMFF003O08+ TATGAATGAGA
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consensus ACCCTGGAGAGTTTTTTTTTTTTTTTTTAGCTGAGAAGTAATATATATATATGAATGAGA

. : . : . : . : . : . :
rJMFF048D07+ ATATCCTGTAATTTTACATGATTTTGCAAGTAATTGACAGGCACTACAACAATAGAACAC
rJMFF003O08+ ATATCCTGTAATTTTACATGATTTTGCAAGTAATTGACAGGCACTACAACAATAGAACAC
rJMSF020G13+ CATGATTTTGCAAGTAATTGACAGGCACTACAACAATAGAACAC
rJMSF026P23+ CATGATTTTGCAAGTAATTGACAGGCACTACAACAATAGAACAC
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consensus ATATCCTGTAATTTTACATGATTTTGCAAGTAATTGACAGGCACTACAACAATAGAACAC

. : . : . : . : . : . :
rJMFF048D07+ CTGACTAAATGTTTCGTGAAAACTATAGAGCAAGACTGAATTGACATATGGTTGATTGCT
rJMFF003O08+ CTGACTAAATGTTTCGTGAAAACTATAGAGCAAGACTGAATTGACATATGGTTGATTGCT
rJMSF020G13+ CTGACTAAATGTTTCGTGAAAACTATAGAGCAAGACTGAATTGACATATGGTTGATTGCT
JMFN041E14- TGCT
rJMSF026P23+ CTGACTAAATGTTTCGTGAAAACTATAGAGCAAGACTGAATTGACATATGGTTGATTGCT
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consensus CTGACTAAATGTTTCGTGAAAACTATAGAGCAAGACTGAATTGACATATGGTTGATTGCT

. : . : . : . : . : . :
rJMFF048D07+ AAAGTCCCTGTGCTACCTAATCGGTGAAGAACAGGTCCAAACTAGTAGAAATGAAGCTCG
rJMFF003O08+ AAAGTCCCTGTGCTACCTAATCGGTGAAGAACAGGTCCAAACTAGTAGAAATGAAGCTCG
rJMSF020G13+ AAAGTCCCTGTGCTACCTAATCGGTGAAGAACAGGTCCAAACTAGTAGAAATGAAGCTCG
JMFN041E14- AAAGTCCCTGTGCTACATAATCGG-GAAGATCAGGTCCAAACTAGTAGAAATGAAGCTCG
rJMSF026P23+ AAAGTCCCTGTGCTACCTAATCGGTGAAGAACAGGTCCAAACTAGTAGAAATGAAGCTCG
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consensus AAAGTCCCTGTGCTACCTAATCGGTGAAGAACAGGTCCAAACTAGTAGAAATGAAGCTCG

. : . : . : . : . : . :
rJMFF048D07+ GGTA
rJMFF003O08+ GGTAGTACTAGTCTTCCACGAGGTTGTTCACTATGGAATCTCGATCATTTTATGCCTATT
rJMSF020G13+ GGTAGTACTAGTCTTCCACGAGGTTGTTCACTATGGAATCTCGATCATTTTATGCCTATT
JMFN041E14- GGTAGTACTAGTCTTCCTCGAGGTTGTTCAATATGGAATCTCGATCATTTTATGCATATT
rJMSF026P23+ GGTAGTACTAGTCTTCCACGAGGTTGTTCACTATGGAATCTCGATCATTTTATGCCTATT
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consensus GGTAGTACTAGTCTTCCACGAGGTTGTTCACTATGGAATCTCGATCATTTTATGCCTATT

. : . : . : . : . : . :
rJMFF003O08+ TGGGCGTAATGGAGCTTTGGTATTCACAGGAGCTTCAACTCTCATCTTCAAAGATTTAAG
rJMSF020G13+ TGGGCGTAATGGAGCTTTGGTATTCACAGGAGCTTCAACTCTCATCTTCAAAGATTTAAG
JMFN041E14- TGGGCGTAATGGAGCTTTGGTATTCACAGGAGCTTCAACTATCATCTTCAAAGATTTAAG
rJMSF026P23+ TGGGCGTAATGGAGCTTTGGTATTCACAGGAGCTTCAACTCTCATCTTCAAAGATTTAAG
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consensus TGGGCGTAATGGAGCTTTGGTATTCACAGGAGCTTCAACTCTCATCTTCAAAGATTTAAG

. : . : . : . : . : . :
rJMFF003O08+ ACTCCATAGGAACTCAGGCAGTAAAATGGAGTTAACTAAAGCATCAATTTGAACCAAGAA
rJMSF020G13+ ACTCCATAGGAACTCAGGCAGTAAAATGGAGTTAACTAAAGCATCAATTTGAACCAAGAA
JMFN041E14- ACTCCATAGGAACTCAGGCAGTAAAATGGAGTTAATTAAAGCATCAATTTGAACCAAGAA
rJMSF026P23+ ACTCCATAGGAACTCAGGCAGTAAAATGGAGTTAACTAAAGCATCAATTTGAACCAAGAA
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consensus ACTCCATAGGAACTCAGGCAGTAAAATGGAGTTAACTAAAGCATCAATTTGAACCAAGAA

. : . : . : . : . : . :
rJMFF003O08+ TGTATAGTACCAGTACCGGTGTTTCAGTTGAGGAGCAAGAGGGAGGTGCGAGAAGCAGTG
rJMSF020G13+ TGTATAGTACCAGTACCGGTGTTTCAGTTGAGGAGCAAGAGGGAGGTGCGAGAAGCAGTG
JMFN041E14- TGTATAGTACCAGTACCGGTGTTTCAGTTGAGGATCAAGAGGGAGGTGCGTGAAGCAGTG
rJMSF026P23+ TGTATAGTACCAGTACCGGTGTTTCAGTTGAGGAGCAAGAGGGAGGTGCGAGAAGCAGTG
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consensus TGTATAGTACCAGTACCGGTGTTTCAGTTGAGGAGCAAGAGGGAGGTGCGAGAAGCAGTG

. : . : . : . : . : . :
rJMFF003O08+ CACCAACGAGTGTAAATATCATGGAGGTTTGGCCAGTCGGATGACGGGCAATAAGTGAAG
rJMSF020G13+ CACCAACGAGTGTAAATATCATGGAGGTTTGGCCAGTCGGATGACGGGCAATAAGTGAAG
JMFN041E14- CACCAACGAGTGTAAATATCATGGAGGTTTGGCCAGTCGGATGACGGGCAATTAGTGAAG
rJMSF026P23+ CACCAACGAGTGTAAATATCATGGAGGTTTGGCCAGTCGGATGACGGGCAATAAGTGAAG
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consensus CACCAACGAGTGTAAATATCATGGAGGTTTGGCCAGTCGGATGACGGGCAATAAGTGAAG

. : . : . : . : . : . :
rJMFF003O08+ TGCTGGAGCCAAAGGGACAGCACTTTTTCTTGCTCTTCTTCATCCAACGTGTTTATTATC
rJMSF020G13+ TGCTGGAGCCAAAGGGACAGCACTTTTTCTTGCTCTTCTTCATCCAACGTGTTTATTATC
JMFN041E14- TTCTGGAGCCAAAGGGACAGCATTTTTTCTTGCTATTCTTCATCCAACGTGTTTATTATC
rJMSF026P23+ TGCTGGAGCCAAAGGGACAGCACTTTTTCTTGCTCTTCTTCATCCAACGTGTTTATTATC
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consensus TGCTGGAGCCAAAGGGACAGCACTTTTTCTTGCTCTTCTTCATCCAACGTGTTTATTATC

. : . : . : . : . : . :
rJMFF003O08+ AGCTCCAACGTTCTCTCTAGCTCCGCTCTCTTGTTGATGCTCAAAA--CCGGAGTGTCTG
rJMSF020G13+ AGCTCCAACGTTCTCTCTAGCTCCGCTCTCTTGTTGATGCTCAAAA--CCGGAGTGTCTG
JMFN041E14- AGCTCCAACGTTCTCTCTAGCTCCGCTCTGTTGTTGATGCTCTAAATCCCGGAGTGTCTG
rJMSF026P23+ AGCTCCAACGTTCTCTCTAGCTCCGCTCTCTTGTTGATGCTCAAAA--CCGGAGTGTCTG
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consensus AGCTCCAACGTTCTCTCTAGCTCCGCTCTCTTGTTGATGCTCAAAA--CCGGAGTGTCTG

. : . : . : . : . : . :
rJMFF003O08+ TGCCATTGCTTGCGCGGCACAGCAGTGGCAGCCATGACACCAGCATATTCATGTTTGTTT
rJMSF020G13+ TGCCATTGCTTGCGCGGCACAGCAGTGGCAGCCATGACACCAGCATATTCATGTTTGTTT
JMFN041E14- TGCCATTGCTTGCGCGGCACAGCAGTGGCAGCCATGACACCAGCATATTCATGTTTGTTT
rJMSF026P23+ TGCCATTGCTTGCGCGGCACAGCAGTGGCAGCCATGACACCAGCATATTCATGTTTGTTT
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consensus TGCCATTGCTTGCGCGGCACAGCAGTGGCAGCCATGACACCAGCATATTCATGTTTGTTT

. : . : . : . : . : . :
rJMFF003O08+ GTCTTAGTTCATCATATTTCATGCTTTCTTCATCTGCCTCTTTCCACAACTGTCTTGCTT
rJMSF020G13+ GTCTTAGTTCATCATATTTCATGCTTTCTTCATCTGCCTCTTTCCACAACTGTCTTGCTT
JMFN041E14- GTCTTAGTTCATCATATTTCATGCTTTCTTCATCTGCCTCTTTCCACAACTGTCTTGCTT
rJMSF026P23+ GTCTAAGTTCATCATATTTCATGCTTTCTTCATCTG
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consensus GTCTTAGTTCATCATATTTCATGCTTTCTTCATCTGCCTCTTTCCACAACTGTCTTGCTT

. : . : . : . : . : . :
rJMFF003O08+ GATC
rJMSF020G13+ GATCCAATAAGAATGCTGAGACTTNGACCAACGCGCCTTGAAGCCGCGGCTCANCCGA
JMFN041E14- GATC
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consensus GATCCAATAAGAATGCTGAGACTTNGACCAACGCGCCTTGAAGCCGCGGCTCANCCGA