Alignment Contig 2667

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF042I08+ AGCAAGATAATTGCATTGTGGTATTAGAAAACTGAATATATTGTACAAATATGTCATGAC
rJMFF024P23+ TTGTGGTATTAGAAAACTGAATATATTGTACAAATATGTCATGAC
rJMFF007I03+ TTGTGGTATTAGAAAACTGAATATATTGTACAAATATGTCATGAC
JMFN036L14- TATATGGTACAAATATGTCATGAC
rJMFF018G15+ TTGTGGTATTAGAAAACTGAATATATTGTACAAATATGTCATGAC
rJMFF013H12+ ATTAGAAAACTGAATATATTGTACAAATATGTCATGAC
____________________________________________________________
consensus AGCAAGATAATTGCATTGTGGTATTAGAAAACTGAATATATTGTACAAATATGTCATGAC

. : . : . : . : . : . :
rJMFF042I08+ AGAAGGGGGGTACAATCAATATGATCGATGGAAAATCCACGCTAATAACAACCCTGATAA
rJMFF024P23+ AGAAGGGGGGTACAATCAATATGATCGATGGAAAATCCACGCTAATAACAACCCTGATAA
rJMFF007I03+ AGAAGGGGGGTACAATCAATATGATCGATGGAAAATCCACGCTAATAACAACCCTGATAA
JMFN036L14- AGAAGGGGGGTACAATCAATATGATCGATGGAAAATCCACGCTAATAACAACCCTGATAA
rJMFF018G15+ AGAAGGGGGGTACAATCAATATGATCGATGGAAAATCCACGCTAATAACAACCCTGATAA
rJMFF013H12+ AGAAGGGGGGTACAATCAATATGATCGATGGAAAATCCACGCTAATAACAACCCTGATAA
____________________________________________________________
consensus AGAAGGGGGGTACAATCAATATGATCGATGGAAAATCCACGCTAATAACAACCCTGATAA

. : . : . : . : . : . :
rJMFF042I08+ ATTTATGACTTAGCATCTTGGTTCTAAAATTGGGTACGCCAAAAAGCATGCGAAATGGTA
rJMFF024P23+ ATTTATGACTTAGCATCTTGGTTCTAAAATTGGGTACGCCAAAAAGCATGCGAAATGGTA
rJMFF007I03+ ATTTATGACTTAGCATCTTGGTTCTAAAATTGGGTACGCCAAAAAGCATGCGAAATGGTA
JMFN036L14- ATTTATGACTTAGCATCTTGGTTCTAAAATTGGGTACGCCAAAAAGCATGCGAAATGGTA
rJMFF018G15+ ATTTATGACTTAGCATCTTGGTTCTAAAATTGGGTACGCCAAAAAGCATGCGAAATGGTA
rJMFF013H12+ ATTTATGACTTAGCATCTTGGTTCTAAAATTGGGTACGCCAAAAAGCATGCGAAATGGTA
____________________________________________________________
consensus ATTTATGACTTAGCATCTTGGTTCTAAAATTGGGTACGCCAAAAAGCATGCGAAATGGTA

. : . : . : . : . : . :
rJMFF042I08+ TATATGAACTCACAAATGATACGCAGCCTGCCTAGCTAGCATGTGTTGATCCCATCCTTG
rJMFF024P23+ TATATGAACTCACAAATGATACGCAGCCTGCCTAGCTAGCATGTGTTGATCCCATCCTTG
rJMFF007I03+ TATATGAACTCACAAATGATACGCAGCCTGCCTAGCTAGCATGTGTTGATCCCATCCTTG
JMFN036L14- TATATGAACTCACAAATGATACGCAGCCTGCCTAGCTAGCATGTGTTGATCCCATCCTTG
rJMFF018G15+ TATATGAACTCACAAATGATACGCAGCCTGCCTAGCTAGCATGTGTTGATCCCATCCTTG
rJMFF013H12+ TATATGAACTCACAAATGATACGCAGCCTGCCTAGCTAGCATGTGTTGATCCCATCCTTG
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consensus TATATGAACTCACAAATGATACGCAGCCTGCCTAGCTAGCATGTGTTGATCCCATCCTTG

. : . : . : . : . : . :
rJMFF042I08+ CAATCTTTGGTCAAGTTGTAAAACGTCTCCACCTTTGTCTTGGCTCTGTAAAGAACCTCG
rJMFF024P23+ CAATCTTTGGTCAAGTTGTAAAACGTCTCCACCTTTGTCTTGGCTCTGTAAAGAACCTCG
rJMFF007I03+ CAATCTTTGGTCAAGTTGTAAAACGTCTCCACCTTTGTCTTGGCTCTGTAAAGAACCTCG
JMFN036L14- CAATCTTTGGTCAAGTTGTAAAACGTCTCCACCTTTGTCTTGGCTCTGTAAAGAACCTCG
rJMFF018G15+ CAATCTTTGGTCAAGTTGTAAAACGTCTCCACCTTTGTCTTGGCTCTGTAAAGAACCTCG
rJMFF013H12+ CAATCTTTGGTCAAGTTGTAAAACGTCTCCACCTTTGTCTTGGCTCTGTAAAGAACCTCG
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consensus CAATCTTTGGTCAAGTTGTAAAACGTCTCCACCTTTGTCTTGGCTCTGTAAAGAACCTCG

. : . : . : . : . : . :
rJMFF042I08+ GTGTCTACTTCAACCCTCATGTACCCATCGAATTCGACGGGGCGCCCACCGTTCAGCTGG
rJMFF024P23+ GTGTCTACTTCAACCCTCATGTACCCATCGAATTCGACGGGGCGCCCACCGTTCAGCTGG
rJMFF007I03+ GTGTCTACTTCAACCCTCATGTACCCATCGAATTCGACGGGGCGCCCACCGTTCAGCTGG
JMFN036L14- GTGTCTACTTCAACCCTCATGTACCCATCGAATTCGACGGGGCGCCCACCGTTCAGCTGG
rJMFF018G15+ GTGTCTACTTCAACCCTCATGTACCCATCGAATTCGACGGGGCGCCCACCGTTCAGCTGG
rJMFF013H12+ GTGTCTACTTCAACCCTCATGTACCCATCGAATTCGACGGGGCGCCCACCGTTCAGCTGG
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consensus GTGTCTACTTCAACCCTCATGTACCCATCGAATTCGACGGGGCGCCCACCGTTCAGCTGG

. : . : . : . : . : . :
rJMFF042I08+ GTTGTTTCATTGTACCATTCGCTCGTATTGCTCCACAAATACTGGTAATCATCTAGCAAG
rJMFF024P23+ GTTGTTTCATTGTACCATTCGCTCGTATTGCTCCACAAATACTGGTAATCATCTAGCAAG
rJMFF007I03+ GTTGTTTCATTGTACCATTCGCTCGTATTGCTCCACAAATACTGGTAATCATCTAGCAAG
JMFN036L14- GTTGTTTCATTGTACCATTCGCTCGTATTGCTCCACAAATACTGGTAATCATCTAGCAAG
rJMFF018G15+ GTTGTTTCATTGTACCATTCGCTCGTATTGCTCCACAAATACTGGTAATCATCTAGCAAG
rJMFF013H12+ GTTGTTTCATTGTACCATTCGCTCGTATTGCTCCACAAATACTGGTAATCATCTAGCAAG
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consensus GTTGTTTCATTGTACCATTCGCTCGTATTGCTCCACAAATACTGGTAATCATCTAGCAAG

. : . : . : . : . : . :
rJMFF042I08+ TGAAGCTTGTAGTGAGGTCTCAATTTATCGAAGTAATTATAGAACGGTTCGTTTGTGGCG
rJMFF024P23+ TGAAGCTTGTAGTGAGGTCTCAATTTATCGAAGTAATTATAGAACGGTTCGTTTGTGGCG
rJMFF007I03+ TGAAGCTTGTAGTGAGGTCTCAATTTATCGAAGTAATTATAGAACGGTTCGTTTGTGGCG
JMFN036L14- TGAAGCTTGTAGTGAGGTCTCAATTTATCGAAGTAATTATAGAACGGTTCGTTTGTGGCC
rJMFF018G15+ TGAAGCTTGTAGTGAGGTCTCAATTTATCGAAGTAATTATAGAACGGTTCGTTTGTGGCG
rJMFF013H12+ TGAAGCTTGTAGTGAGGTCTCAATTTATCGAAGTAATTATAGAACGGTTCGTTTGTGGCG
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consensus TGAAGCTTGTAGTGAGGTCTCAATTTATCGAAGTAATTATAGAACGGTTCGTTTGTGGCG

. : . : . : . : . : . :
rJMFF042I08+ ATATACAGATTCCTTCCAGGCACGACCGCTTTTTGGATCTTTTCGACGAGGGCATCTGGC
rJMFF024P23+ ATATACAGATTCCTTCCAGGCACGACCGCTTTTTGGATCTTTTCGACGAGGGCATCTGGC
rJMFF007I03+ ATATACAGATTCCTTCCAGGCACGACCGCTTTTTGGATCTTTTCGACGAGGGCATCTGGC
JMFN036L14- ACCCCCAGATTCCTTCCAGGCACGACCGCTTTTTGGATCTTTTCGACGAGGGCATCTGGC
rJMFF018G15+ ATATACAGATTCCTTCCAGGCACGACCGCTTTTTGGATCTTTTCGACGAGGGCATCTGGC
rJMFF013H12+ ATATACAGATTCCTTCCAGGCACGACCGCTTTTTGGATCTTTTCGACGAGGGCATCTGGC
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consensus ATATACAGATTCCTTCCAGGCACGACCGCTTTTTGGATCTTTTCGACGAGGGCATCTGGC

. : . : . : . : . : . :
rJMFF042I08+ GATGTATCGGCATCCAAGTGGGGCCATAACGCCTTATTCTCGGCTTTCTGTCCCCGGACA
rJMFF024P23+ GATGTATCGGCATCCAAGTGGGGCCATAACGCCTTATTCTCGGCTTTCTGTCCCCGGACA
rJMFF007I03+ GATGTATCGGCATCCAAGTGGGGCCATAACGCCTTATTCTCGGCTTTCTGTCCCCGGACA
JMFN036L14- GATGTATCGGCATCCAAGTGGGGCCATAACGCCTTATTCTCGGCTTTC
rJMFF018G15+ GATGTATCGGCATCCAAGTGGGGCCATAACGCCTTATTCTCGGCTTTCTGTCCCCGGACA
rJMFF013H12+ GATGTATCGGCATCCAAGTGGGGCCATAACGCCTTATTCTCGGCTTTCTGTCCCCGGACA
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consensus GATGTATCGGCATCCAAGTGGGGCCATAACGCCTTATTCTCGGCTTTCTGTCCCCGGACA

. : . : . : . : . : . :
rJMFF024P23+ ACATGAGCAGCGTCAAAGTCCCAATCCATACTCCCGCTAATTGCAGTAACTATGTTCATC
rJMFF007I03+ ACATGAGCAGCGTCAAAGTCCCAATCCATACTCCCGCTAATTGCAGTAACTATGTTCATC
rJMFF018G15+ ACATGAGCAGCGTCAAAGTCCCAATCCATACTCCCGCTAATTGCAGTAACTATGTTCATC
rJMFF013H12+ ACATGAGCAGCGTCAAAGTCCCAATCCATACTCCCGCTAATTGCAGTAACTATGTTCATC
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consensus ACATGAGCAGCGTCAAAGTCCCAATCCATACTCCCGCTAATTGCAGTAACTATGTTCATC

. : . : . : . : . : . :
rJMFF024P23+ AATCGTTTAGATTTCCACAATGCGTGCCACGG-TCTATGGATGTACTTTGCGGAGGGACC
rJMFF007I03+ AATCGTTTAGATTTCCACAATGCGTGCCACGGGTCTATGGATGTACTTTGCGGAGGGACC
rJMFF018G15+ AATCGTTTAGATTTCCACAATGCGTGCCACGG-TCTATGGATGTACTTTGCGGAGGGACC
rJMFF013H12+ AATCGTTTAGATTTCCACAATGCGTGCCACGGGTCTATGGATGTACTTTGCGGAGGGACC
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consensus AATCGTTTAGATTTCCACAATGCGTGCCACGGGTCTATGGATGTACTTTGCGGAGGGACC

. : . : . : . : . : . :
rJMFF024P23+ TTCGCAGACTCTATACCAATAGTTTTCGGGCTCGGGGG-CATCGAATTGTCGCCATATTA
rJMFF007I03+ TTCGCAGACTCTATACCAATAGTTTTCGGGCTCGGGGGGCATCGAATTGTCGCCATATTA
rJMFF018G15+ TTCGCAGACTCTATACCAATAGCTTTCGGGCTCGGGGG-CATCGAATTGTCGCCATATTA
rJMFF013H12+ TTCGCAGACTCTATACCAATAGTTTTCGGGCTCGGGGG-CATCGAATTGTCGCCATATTA
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consensus TTCGCAGACTCTATACCAATAGTTTTCGGGCTCGGGGG-CATCGAATTGTCGCCATATTA

. : . : . : . : . : . :
rJMFF024P23+ TCGTGCTCTTGTCTTTC
rJMFF007I03+ TCGTGCTCTTGTATTTCTCANCTGCATTGGCGTGACTTTATAGCCAGCCACCTTTCT
rJMFF018G15+ TCGTGCTCTTGTCTTTC
rJMFF013H12+ TCGTGCTCTTGTATTTC
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consensus TCGTGCTCTTGTATTTCTCANCTGCATTGGCGTGACTTTATAGCCAGCCACCTTTCT