Alignment Contig 2579

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF021F10+ ACTGATATGAAAGACGTAACATAATGCCGATGAACATAGAAATGATTTGCCGGTGTCTTG
rJMFF012B22+ AAGACGTAACATAATGCCGATGAACATAGAAATGATTTGCCGGTGTCTTG
____________________________________________________________
consensus ACTGATATGAAAGACGTAACATAATGCCGATGAACATAGAAATGATTTGCCGGTGTCTTG

. : . : . : . : . : . :
rJMFF021F10+ TGTTCTTGAGACACAGTGATTCTTTGATAGCTGCTACCTAGGAAGCAAATGAAATTTCAT
rJMFF012B22+ TGTTCTTGAGACACAGTGATTCTTTGATAGCTGCTACCTAGGAAGCAAATGAAATTTCAT
rJMFF010P05+ T
rJMFF017I02+ T
____________________________________________________________
consensus TGTTCTTGAGACACAGTGATTCTTTGATAGCTGCTACCTAGGAAGCAAATGAAATTTCAT

. : . : . : . : . : . :
rJMFF021F10+ TTTGTGCAATTTGATTTAACACAGTGATTACAGAGCTAATGTTTTTTCTTAATTTTCATG
rJMFF021N10+ ATTTTCATG
rJMFF012B22+ TTTGTGCAATTTGATTTAACACAGTGATTACAGAGCTAATGTTTTTTCTTAATTTTCATG
rJMFF010P05+ TTTGTGCAATTTGATTTAACACAGTGATTACAGAGCTAATGTTTTTTCTTAATTTTCATG
rJMFF017I02+ TTTGTGCAATTTGATTTAACACAGTGATTACAGAGCTAATGTTTTTTCTTAATTTTCATG
rJMFF015P02+ ATTTGATTTAACACAGTGATTACAGAGCTAATGTTTTTTCTTAATTTTCATG
rJMSF050G04+ AGTGATTACAGAGCTAATGTTTTTTCTTAATTTTCATG
____________________________________________________________
consensus TTTGTGCAATTTGATTTAACACAGTGATTACAGAGCTAATGTTTTTTCTTAATTTTCATG

. : . : . : . : . : . :
rJMFF021F10+ CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAATTCTTGATCT
rJMFF021N10+ CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAATTCTTGATCT
rJMFF012B22+ CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAATTCTTGATCT
rJMFF010P05+ CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAATTCTTGATCT
rJMFF017I02+ CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAATTCTTGATCT
rJMFF015P02+ CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAATTCTTGATCT
rJMSF050G04+ CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAACTCTTGATCT
____________________________________________________________
consensus CTCCAATAATGTTTCTGAAATTTTTTAAATTTACCAGAAAGTTATTTGAATTCTTGATCT

. : . : . : . : . : . :
rJMFF021F10+ TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT
rJMFF021N10+ TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT
rJMFF012B22+ TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT
rJMFF010P05+ TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT
rJMFF017I02+ TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT
rJMFF015P02+ TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT
rJMSF050G04+ TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT
____________________________________________________________
consensus TAGGATTCATCTTCCCAATTCCAATCGTCAGGGGAGCACCAAGGGAACGTTGGAGCCTGT

. : . : . : . : . : . :
rJMFF021F10+ TCTTCCGATAGCAGAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA
rJMFF021N10+ TCTTCCGATAGCANAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA
rJMFF012B22+ TCTTCCGATAGCAGAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA
rJMFF010P05+ TCTTCCGATAGCAGAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA
rJMFF017I02+ TCTTCCGATAGCAGAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA
rJMFF015P02+ TCTTCCGATAGCAGAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA
rJMSF050G04+ TCTTCCGATAGCAGAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA
____________________________________________________________
consensus TCTTCCGATAGCAGAATGGTGCAGGGCTCTTCGCCGGCGGCGAAGAAATTGTGCTCCTCA

. : . : . : . : . : . :
rJMFF021F10+ ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG
rJMFF021N10+ ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG
rJMFF012B22+ ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG
rJMFF010P05+ ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG
rJMFF017I02+ ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG
rJMFF015P02+ ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG
rJMSF050G04+ ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG
____________________________________________________________
consensus ATTTTCACGAACTGGGAGTCGTCGTAGGAATCTCCGAGGATGTTTTTCGGGATCTCCGAG

. : . : . : . : . : . :
rJMFF021F10+ AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG
rJMFF021N10+ AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG
rJMFF012B22+ AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG
rJMFF010P05+ AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG
rJMFF017I02+ AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG
rJMFF015P02+ AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG
rJMSF050G04+ AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG
____________________________________________________________
consensus AATTGAGCGGGGTTGTCGGACGCCGTCAAGAACGCCGCCCCCGACGAAGACATGGCGGCG

. : . : . : . : . : . :
rJMFF021F10+ GCGTTGGGGCTGTTGTCATCGTTCAGTATGGCGCTGGCGGAGTCGCTGTCCGATGACCAG
rJMFF021N10+ GCGNTGGGGCTGTTGTCNTCNNTCAGNATGGCGCTGG
rJMFF012B22+ GCGTTGGGGCTGTTGTCATCGTTCAGTATGGCGCTGGCGGAGTCGCTGTCCGATGACCAG
rJMFF010P05+ GCGTTGGGGCTGTTGTCATCGTTCAGTATGGCGCTGGCGGAGTCGCTGTCCGATGACCAG
rJMFF017I02+ GCGTTGGGGCTGTTGTCATCGTTCAGTATGGCGCTGGCGGAGTCGCTGTCCGATGACCAG
rJMFF015P02+ GCGTTGGGGCTGTTGTCATCGTTCAGTATGGCGCTGGCGGAGTCGCTGTCCGATGACCAG
rJMSF050G04+ GCGTTGGGGCTGTTGTCATCGTTCAGTATGGCGCTGGCGGAGTCGCTGTCCGATGACCAG
____________________________________________________________
consensus GCGTTGGGGCTGTTGTCATCGTTCAGTATGGCGCTGGCGGAGTCGCTGTCCGATGACCAG

. : . : . : . : . : . :
rJMFF021F10+ TCTTTGAATTCCGCAAAAATCGAGGCGTTGCCGCCGCCGCCGCCGCCGTGGAAATGGTTG
rJMFF012B22+ TCTTTGAATTCCGCAAAAATCGAGGCGTTGCCGCCGCCGCCGCCGCCGTGGAAATGGTTG
rJMFF010P05+ TCTTTGAATTCCGCAAAAATCGAGGCGTTGCCGCCGCCGCCGCCGCCGTGGAAATGGTTG
rJMFF017I02+ TCTTTGAATTCCGCAAAAATCGAGGCGTTGCCGCCGCCGCCGCCGCCGTGGAAATGGTTG
rJMFF015P02+ TCTTTGAATTCCGCAAAAATCGAGGCGTTGCCGCCGCCGCCGCCGCCGTGGAAATGGTTG
rJMSF050G04+ TCTTTGAATTCCGCAAAAATCGAGGCGTTGCCGCCGCCGCCGCCGCCGTGGAAATGGTTG
____________________________________________________________
consensus TCTTTGAATTCCGCAAAAATCGAGGCGTTGCCGCCGCCGCCGCCGCCGTGGAAATGGTTG

. : . : . : . : . : . :
rJMFF021F10+ TCGCCGAAGTTTAGCTCTGTTTCAATGTCAAGCG
rJMFF012B22+ TCGCCGAAGTTTANCTCTGTTTCAATGTCAAGCGAGACGGC
rJMFF010P05+ TCGCCGAAGTTTAGCTCTGTTTCAATGTCAAGCGAGACGGCGGCCGTCGATTTCNACTTG
rJMFF017I02+ TCGCCGAAGTTTAGCTCTGTTTCAATGTCAAGCGAGACGGCGGCCGTCNATTTCNACTTG
rJMFF015P02+ TCGCCGAAGTTTAGCTCTGTTTCAATGTCAAGCGAGACGGCGGCCGTCGATTTCGACTTG
rJMSF050G04+ TCGCCGAAGTTTAGCTCTGTTTCAATGTCAAGCGAGACGGCGGCCGTCGATTTCGACTTG
____________________________________________________________
consensus TCGCCGAAGTTTAGCTCTGTTTCAATGTCAAGCGAGACGGCGGCCGTCGATTTCGACTTG

. : . : . : . : . : . :
rJMFF010P05+ TCGCCGCCGCCGCTAAAGGATTCCACCGCCTCTTCTTTCACCGNCACCGNCACTTTTCTC
rJMFF017I02+ TCGCCGCCGCCGCTAAAGGATTCCACCGCCTCTTCTTTCACCGTCACCGNCACTTTTCTC
rJMFF015P02+ TCGCCGCCGCCGCTAAAGGATTCCACCGCCTCTTCCTTCACCGTCACCGTCACTTTTCTC
rJMSF050G04+ TCGCCGCCGCCGCTAAAGGATTCCACCGCCTCTTCCTTCACCGTCACCGTCACTTTTCTC
____________________________________________________________
consensus TCGCCGCCGCCGCTAAAGGATTCCACCGCCTCTTCCTTCACCGTCACCGTCACTTTTCTC

. : . : . : . : . : . :
rJMFF010P05+ TCTCCGNCGNCCTCNCCATTCNTCTTCCCTTTCANCTCCCNAATCTGNTCNAGGANATCT
rJMFF017I02+ TCTCCG
rJMFF015P02+ TCTCCGTCGTCCTCGCCATTCATCTTCCCTTTCAGCTCCCGAATCTGTTCGAGGAGATCT
rJMSF050G04+ TCTCCGTCGTCCTCGCCATTCATCTTCCCTTTCAGCTCCCGAATCTGTTCGAGGAGATCT
____________________________________________________________
consensus TCTCCGTCGTCCTCGCCATTCATCTTCCCTTTCAGCTCCCGAATCTGTTCGAGGAGATCT

. : . : . : . : . : . :
rJMFF010P05+ TGG
rJMFF015P02+ TGGTTGTCATGTTGGAGAGTTTCATAGCTGCGTTTGANGGGAATCATAGTTGGCTTTCAG
rJMSF050G04+ TGGTTGTCATGTTGGAGAGTTTCATAGCTGCGTTTGA-GGGAATCATAGTTGGCTTTCAG
____________________________________________________________
consensus TGGTTGTCATGTTGGAGAGTTTCATAGCTGCGTTTGANGGGAATCATAGTTGGCTTTCAG

. : . : . : . : . : . :
rJMFF015P02+ GACGCCGTAAATCTCTCTCCAGCTGCTTGGTCTTCCACC
rJMSF050G04+ GACGCCGTAA-TCTCTCTCCAGCTGCTTGGTCT
____________________________________________________________
consensus GACGCCGTAAATCTCTCTCCAGCTGCTTGGTCTTCCACC