Alignment Contig 2531

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF009D18+ AGATTTATCTAAGAGATTGAAGTAATTTAAGAGCAAGAGCAAAAGTCTATGGATTGAGAT
rJMFF051L20+ TTTAAGAGCAAGAGCAAAAGTCTATGGATTGAGAT
rJMFF013B04+ TGGATTGAGAT
rJMFF007K12+ TGGATTGAGAT
JMSF049F12- TGAGAT
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consensus AGATTTATCTAAGAGATTGAAGTAATTTAAGAGCAAGAGCAAAAGTCTATGGATTGAGAT

. : . : . : . : . : . :
rJMFF009D18+ TTGAGAACACATATTCCTACCCTTGGATTAGATAAAGAAAAGCATACTAGGAATTT-TGG
rJMFF051L20+ TTGAGAACACATATTCCTACCCTTGGATTAGATAAAGAAAAGCATACTAGGAATTTCTGG
rJMFF013B04+ TTGAGAACACATATTCCTACCCTTGGATTAGATAAAGAAAAGCATACTAGGAATTTCTGG
rJMFF007K12+ TTGAGAACACATATTCCTACCCTTGGATTAGATAAAGAAAAGCATACTAGGAATTTCTGG
rJMSF049F12+ AAAGCATACTAGGAATTTCTGG
JMSF049F12- TTGAGAACACATATTCCTACCCTTGGATTAGATAAAGAAAAGCATACTAGGAATTTCTGG
rJMFF009L08+ CCCTTGGATTAGATAAAGAAAAGCATACTAGGAATTTCTGG
rJMSF044G15+ AAAGCATACTAGGAATTTCTGG
rJMSF050H20+ TAGGAATTTCTGG
rJMFF022P17+ ATTTCTGG
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consensus TTGAGAACACATATTCCTACCCTTGGATTAGATAAAGAAAAGCATACTAGGAATTTCTGG

. : . : . : . : . : . :
rJMFF009D18+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMFF051L20+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMFF013B04+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMFF007K12+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMSF049F12+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
JMSF049F12- GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMFF009L08+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMSF044G15+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMSF050H20+ GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
rJMFF022P17+ GTCAGTATTTAGTTTCAA-TAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC
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consensus GTCAGTATTTAGTTTCAAATAATAATCATGGAACAAGATTTAGTAACCATATTTGTAGAC

. : . : . : . : . : . :
rJMFF009D18+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMFF051L20+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMFF013B04+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMFF007K12+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMSF049F12+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
JMSF049F12- ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMFF009L08+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMSF044G15+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMSF050H20+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
rJMFF022P17+ ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT
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consensus ATAGATCCCCCAGTTTCACAGACCAAGCAACCCAAAGAAACTTCAACAAATAACAGACTT

. : . : . : . : . : . :
rJMFF009D18+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMFF051L20+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMFF013B04+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMFF007K12+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMSF049F12+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
JMSF049F12- GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMFF009L08+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMSF044G15+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMSF050H20+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
rJMFF022P17+ GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG
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consensus GCTTTTCTGCACTGCAAGCTTAGGCCTTGCTGTCAATGGCTTCTGCCTCCTGAGGAGCTG

. : . : . : . : . : . :
rJMFF009D18+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
rJMFF051L20+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
rJMFF013B04+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
rJMFF007K12+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
rJMSF049F12+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
JMSF049F12- ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
rJMFF009L08+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
rJMSF044G15+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGACAAACATGTTTCCATAGAATT
rJMSF050H20+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
rJMFF022P17+ ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT
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consensus ATTTATTAGAACTGAATGGTTCCGGCTTGCTCAACTTGGCAAACATGTTTCCATAGAATT

. : . : . : . : . : . :
rJMFF009D18+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMFF051L20+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMFF013B04+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMFF007K12+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMSF049F12+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
JMSF049F12- TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMFF009L08+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMSF044G15+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMSF050H20+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA
rJMFF022P17+ TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTANAACCTTATATTCAAGCTTCA
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consensus TGGCATCCTTCTTATTGTATTCTTTTACCTTTTCCTTTAGAACCTTATATTCAAGCTTCA

. : . : . : . : . : . :
rJMFF009D18+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMFF051L20+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMFF013B04+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMFF007K12+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMSF049F12+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
JMSF049F12- CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMFF009L08+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMSF044G15+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMSF050H20+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
rJMFF022P17+ CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA
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consensus CCTCCCTGTTGTCAGGATCAATTTCGAGAGCTTTCTTGATATCAAACTCAGCCAGATCAA

. : . : . : . : . : . :
rJMFF009D18+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCTGTAGAGTGCTTTAACATTAGTACTCT
rJMFF051L20+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGC
rJMFF013B04+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
rJMFF007K12+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
rJMSF049F12+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
JMSF049F12- AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
rJMFF009L08+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
rJMSF044G15+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
rJMSF050H20+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
rJMFF022P17+ AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT
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consensus AATCAGCAAAGTGTATATATGCTTGAGCTCTGCGGTAGAGTGCTTTAACATTAGTACTCT

. : . : . : . : . : . :
rJMFF009D18+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT
rJMFF013B04+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT
rJMFF007K12+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT
rJMSF049F12+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGC
JMSF049F12- CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGC
rJMFF009L08+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT
rJMSF044G15+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT
rJMSF050H20+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT
rJMFF022P17+ CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT
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consensus CCAGTTCAAGCACCTTAGTACATAGTTTCTCAGCCTCCTTGTAATCTTTCAATTTCAACT

. : . : . : . : . : . :
rJMFF009D18+ TGCACGCTGCATTGTTTAGGTTGCAGGAGATCTTCAAGGCCTTAGATTGCTTCTTCTCCT
rJMFF013B04+ TGCACGCTGCATTGTTTANGTTGCAGGAGATCTTCAAGGCCTTAGATTGCTTCTTCTCCT
rJMFF007K12+ TGCACGCTGCATTGTTTAGGTTGCAGGAGATCTTCAAGGCCTTAGATTGCTTCTTCTCCT
rJMFF009L08+ TGCACGCTGCATTGTTTAGGTTGCAGGAGATCTTCAAGGCCTTANATTGCTTCTTCTCCT
rJMSF044G15+ TGCACGCTGCATTGTTTAGGTTGCAGGAGATCTTCAAGGCCTTAGATTGCTTCTTCTCCT
rJMSF050H20+ TGCACGCTGCATTGTTTAGGTTGCAGGAGATCTTCAAGGCCTTAGATTGCTTCTTCTCCT
rJMFF022P17+ TGCACGCTGCATTGTTTAGGTTGCAGGAGATCTTCAAGGCCTTAGATTGCTTCTTCTCCT
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consensus TGCACGCTGCATTGTTTAGGTTGCAGGAGATCTTCAAGGCCTTAGATTGCTTCTTCTCCT

. : . : . : . : . : . :
rJMFF009D18+ CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG
rJMFF013B04+ CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG
rJMFF007K12+ CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG
rJMFF009L08+ CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG
rJMSF044G15+ CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG
rJMSF050H20+ CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG
rJMFF022P17+ CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG
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consensus CCTCACTAAAGGAAGTATCATATTCAATGAACTTAGCTCCCTTCTCGTATCTCTTCGAAG

. : . : . : . : . : . :
rJMFF009D18+ CTCTTGCGTATTTGCCTG
rJMFF013B04+ CTCTTGCGT
rJMFF007K12+ CTCTTGCGTATTTGCCTGCCTTGAAAAGNACATTTCCTTCTTCCTTCTTTTTGCCTGCAG
rJMFF009L08+ CTCTTGCGTATTTGCCTGC
rJMSF044G15+ CTCTTGCGTATTTGCCTGCCTTGAAAAGTACATTTCCTTCTTCCTTCTTTTTGCCTGCAG
rJMSF050H20+ CTCTTGCGTATTTGCCTGCCTTGAAAAGTACATTTCCTTCTTCCTTCTTTTTGCCTGCAG
rJMFF022P17+ CTCTTGCGTATTTGCCTGCCTTGAAAAGTACATTTCCTTCTTCCTTCTTTTTGCCTGCAG
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consensus CTCTTGCGTATTTGCCTGCCTTGAAAAGTACATTTCCTTCTTCCTTCTTTTTGCCTGCAG

. : . : . : . : . : . :
rJMFF007K12+ CCTCAAT
rJMSF044G15+ CCTCAATCTTCTCCTGGGTGTTCATATCCCATGATTCTCTTTCCTTGACAAAAGAAACAA
rJMSF050H20+ CCTCAATCTTCTCCTGGGTGTTCATATCCCATGATTCTCTTTCCT-GACAAAAGAAACAA
rJMFF022P17+ CCTCAATCTTCTCCTGGGTGTTCATAT
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consensus CCTCAATCTTCTCCTGGGTGTTCATATCCCATGATTCTCTTTCCTTGACAAAAGAAACAA

. : . : . : . : . : . :
rJMSF044G15+ GTTCAATTTCAT
rJMSF050H20+ GTTCAATTTCATAAGAC
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consensus GTTCAATTTCATAAGAC