Alignment Contig 2521

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF007C11+ ATTGATAATAAATAACATTCTTGCCAAAAACAAAGGTCAAAATTCAAAACCGCTACAAAT
rJMSF027B22+ ACAAAGGTCAAAATTCAGAACCGCTACNAAT
rJMFF026M01+ TTGATAATAAATAACATTCTTGCCAAAA-CAAAGGTCAAAATTCAAAACCGCTACAAAT
rJMFF013M17+ AT
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consensus ATTGATAATAAATAACATTCTTGCCAAAAACAAAGGTCAAAATTCAAAACCGCTACAAAT

. : . : . : . : . : . :
rJMFF007C11+ ACTCTCAGTAAAGAAAAAGGATAGTTCATAACAGAGGAAATTCAAAATTTGCAGTGTGTA
rJMSF027B22+ ACTCTCAGTAAAGAAAAAGGATAGTTCATAACAGAGGAAATTCAAAATTTGCAGTGTGTA
rJMFF026M01+ ACTCTCAGTAAAGAAAAAGGATAGTTCATAACAGAGGAAATTCAAAATTTGCAGTGTGTA
rJMFF013M17+ ACTCTCAGTAAAGAAAAAGGATAGTTCATAACAGAGGAAATTCAAAATTTGCAGTGTGTA
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consensus ACTCTCAGTAAAGAAAAAGGATAGTTCATAACAGAGGAAATTCAAAATTTGCAGTGTGTA

. : . : . : . : . : . :
rJMFF007C11+ AGCTACAAACTCGAAACTCGAGTTATGGGAATGATACGATGTGGCAATGTGCTTACTTGA
rJMSF027B22+ AGCTNCAAACTCGAAACTCGAGTTATGGGAATGATACGATGTGGCAATGTGCTTACTTGA
rJMFF026M01+ AGCTACAAACTCGAAACTCGAGTTATGGGAATGATACGATGTGGCAATGTGCTTACTTGA
rJMFF013M17+ AGCTACAAACTCGAAACTCGAGTTATGGGAATGATACGATGTGGCAATGTGCTTACTTGA
rJMFF018E11+ ACTTGA
rJMFF037H10+ ACTTGA
rJMSF026B22+ ACTTGA
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consensus AGCTACAAACTCGAAACTCGAGTTATGGGAATGATACGATGTGGCAATGTGCTTACTTGA

. : . : . : . : . : . :
rJMFF007C11+ AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC
rJMSF027B22+ AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC
rJMFF026M01+ AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC
rJMFF013M17+ AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC
rJMFF018E11+ AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC
rJMFF037H10+ AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC
rJMSF026B22+ AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC
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consensus AACACTTTGCATCTAGAAGAGCCTCACCTTCAAAAGGCTCGGCATCCTCAATCATCTGGC

. : . : . : . : . : . :
rJMFF007C11+ TGACCCGCTCCTTCTGAGCTGGATCGTTGATGTCTACTTGCTTCCACTCGTACAGCTCCA
rJMSF027B22+ TGACCCGCTCCTTCTGAACTGGATCGTTGATGTCTACTTGCTTCNACTCGTACAGCTCCN
rJMFF026M01+ TGACCCGCTCCTTCTGAGCTGGATCGTTGATGTCTACTTGCTTCCACTCGTACAGCTCCA
rJMFF013M17+ TGACCCGCTCCTTCTGAGCTGGATCGTTGATGTCTACTTGCTTCCACTCGTACAGCTCCA
rJMFF018E11+ TGACCCGCTCCTTCTGAGCTGGATCGTTGATGTCTACTTGCTTCCACTCGTACAGCTCCA
rJMFF037H10+ TGACCCGCTCCTTCTGAGCTGGATCGTTGATGTCTACTTGCTTCCACTCGTACAGCTCCA
rJMSF026B22+ TGACCCGCTCCTTCTGAACTGGATCGTTGATGTCTACTTGCTTCCACTCGTACAGCTCCA
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consensus TGACCCGCTCCTTCTGAGCTGGATCGTTGATGTCTACTTGCTTCCACTCGTACAGCTCCA

. : . : . : . : . : . :
rJMFF007C11+ TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAACC
rJMSF027B22+ TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAANC
rJMFF026M01+ TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAACC
rJMFF013M17+ TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAACC
rJMFF018E11+ TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAACC
rJMFF037H10+ TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAACC
rJMSF026B22+ TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAACC
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consensus TGTCATAACATTCATCCAAAACAAACTTGGGAATTTCTTTCCCGCGGAAAAGCCACAACC

. : . : . : . : . : . :
rJMFF007C11+ CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC
rJMSF027B22+ CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC
rJMFF026M01+ CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC
rJMFF013M17+ CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC
rJMFF018E11+ CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC
rJMFF037H10+ CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC
rJMSF026B22+ CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC
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consensus CCTTCACCTTGAACGGGGGCTCTGAGCCAATCACCAACATCTTGCCAAACGCATACTTGC

. : . : . : . : . : . :
rJMFF007C11+ GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTACAAAGGAAACAG
rJMSF027B22+ GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTANAAAGGAAANAG
rJMFF026M01+ GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTACAAAGGAAACAG
rJMFF013M17+ GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTACAAAGGAAACAG
rJMFF018E11+ GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTACAAAGGAAACAG
rJMFF037H10+ GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTACAAAGGAAACAG
rJMSF026B22+ GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTACAAAGGAAACAG
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consensus GTGCCAGATCCATCCTCTGCAGAAAACCGCCCACCTTGTTCATCGTTACAAAGGAAACAG

. : . : . : . : . : . :
rJMFF007C11+ TGTTTTCATCATTGTACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA
rJMSF027B22+ TGTTTTCATCATTGNACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA
rJMFF026M01+ TGTTTTCATCATTGTACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA
rJMFF013M17+ TGTTTTCATCATTGTACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA
rJMFF018E11+ TGTTTTCATCATTGTACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA
rJMFF037H10+ TGTTTTCATCATTGTACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA
rJMSF026B22+ TGTTTTCATCATTGTACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA
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consensus TGTTTTCATCATTGTACTTGTAATCACAGAACCAAAGAGAGTATCCCTCTGGATCATACA

. : . : . : . : . : . :
rJMFF007C11+ TATCCCAAAAACCTTTAATGGCAACCTCACGAAAGTTGGTCTTGGTGTTGGAGTATAGCC
rJMSF027B22+ TATCCCAAAAACCTTTAATGGCAACCTCACGAANGTTGGTCTTGGTGTTGGAGTATAGCC
rJMFF026M01+ TATCCCAAAAACCTTTAATGGCAACCTCACGAAAGTTGGTCTTGGTGTTGGAGTATAGCC
rJMFF013M17+ TATCCCAAAAACCTTTAATGGCAACCTCACGAAAGTTGGTCTTGGTGTTGGAGTATAGCC
rJMFF018E11+ TATCCCAAAAACCTTTAATGGCAACCTCACGAAAGTTGGTCTTGGTGTTGGAGTATAGCC
rJMFF037H10+ TATCCCAAAAACCTTTAATGGCAACCTCACGAAAGTTGGTCTTGGTGTTGGAGTATAGCC
rJMSF026B22+ TATCCCAAAAACCTTTAATGGCAACCTCACGAAAGTTGGTCTTGGTGTTGGAGTATAGCC
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consensus TATCCCAAAAACCTTTAATGGCAACCTCACGAAAGTTGGTCTTGGTGTTGGAGTATAGCC

. : . : . : . : . : . :
rJMFF007C11+ TCTTCCACTCATCAAGAATCATCTTGCTTGGGGGCAAGAGATCAAGAGGATTTTTTGGCT
rJMSF027B22+ TCTTCNACTCATCAAGAATCANCTTGCT
rJMFF026M01+ TCTTCCACTCATCAAGAATCATCTTGCTTGGGGGCAAG
rJMFF013M17+ TCTTCCACTCATCAAGAATCATCTTGCTTGGGGGCAAGAGATCAAGAGGATTTTTTGGCT
rJMFF018E11+ TCTTCCACTCATCAAGAATCATCTTGCTTGGGGGCAAGAGATCAAGAGGATTTTTTGGCT
rJMFF037H10+ TCTTCCACTCATCAAGAATCATCTTGCTTGGGGGCAAGAGATCAAGAGGATTTTTTGGCT
rJMSF026B22+ TCTTCCACTCATCAAGAATCATCTTGCTTGGGGGCAAGAGATCAAGAGGATTTTTTGGCT
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consensus TCTTCCACTCATCAAGAATCATCTTGCTTGGGGGCAAGAGATCAAGAGGATTTTTTGGCT

. : . : . : . : . : . :
rJMFF007C11+ TTGG------CTTGGGCGCTTCTTC
rJMFF013M17+ TTGG------CTTGGGCGCTTCTTC
rJMFF018E11+ TTGG------CTTGGGCGCTTCTTC
rJMFF037H10+ TTGG------CTTGGGCGCTTCTTCTTCATCTGCATCATCCTTANGCTTTGGATCTTCTT
rJMSF026B22+ TTGGCTTTGGCTTGGGCGCTTCTTCTNCATCTGCATCATCCTTAGGCTTTGGATCTNCTT
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consensus TTGG------CTTGGGCGCTTCTTCTTCATCTGCATCATCCTTAGGCTTTGGATCTTCTT

. : . : . : . : . : . :
rJMFF037H10+ TCTTAGCTTCTTTCTTAGCCTCTTTCT
rJMSF026B22+ TC
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consensus TCTTAGCTTCTTTCTTAGCCTCTTTCT