Alignment Contig 2448

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF048A03+ GAGTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMFF001M06+ AGTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMSF037D18+ GTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMSF031C06+ GTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMSF032K18+ GTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMSF035G24+ AGTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMSF039O15+ AGTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMSF048I18+ GCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMSF015M07+ CGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMFS039G06+ TCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
JMFS073B07+ CTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA
____________________________________________________________
consensus GAGTAGCCGCTCCTTCGTCCGCCCGAGCTCCCACATCCGATTTGGGGAAAATATCAACCA

. : . : . : . : . : . :
JMSF048A03+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMFF001M06+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMSF037D18+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMSF031C06+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMSF032K18+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMSF035G24+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMSF039O15+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMSF048I18+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMFS053D08+ CCCTAGGAAATGACAGGAGGG
JMSF015M07+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMFS039G06+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
JMFS073B07+ TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG
____________________________________________________________
consensus TCAATACTCGCCCGCTAAACCATTAGAATTCTTCACAAACCCTAGGAAATGTCAGGAGGG

. : . : . : . : . : . :
JMSF048A03+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMFF001M06+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMSF037D18+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMSF031C06+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMSF032K18+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMSF035G24+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMSF039O15+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMSF048I18+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMFS053D08+ TTATTCCGGGGCACGACCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMSF015M07+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMFS039G06+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
JMFS073B07+ TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA
____________________________________________________________
consensus TTTTTCCGGGGCACGTCCGCCGATCAGGATACTCGCTTCTCCAACAAGCAAGCTAAGCTA

. : . : . : . : . : . :
JMSF048A03+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMFF001M06+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMSF037D18+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMSF031C06+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMSF032K18+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMSF035G24+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMSF039O15+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMSF048I18+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMFS053D08+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMSF015M07+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMFS039G06+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
JMFS073B07+ TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG
____________________________________________________________
consensus TTGAAATCGCAGAAGTTCGCTCCCGAATTGGAGCATCTGGTGGATATGGGGAAAGTAAAG

. : . : . : . : . : . :
JMSF048A03+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMFF001M06+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMSF037D18+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMSF031C06+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMSF032K18+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMSF035G24+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMSF039O15+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMSF048I18+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMFS053D08+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMSF015M07+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMFS039G06+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
JMFS073B07+ ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT
____________________________________________________________
consensus ATGGATGTAATGAGACCTTGGATAGCGAAGCGAGTTACTGAGCTCGTAGGGATTGAAGAT

. : . : . : . : . : . :
JMSF048A03+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMFF001M06+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMSF037D18+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMSF031C06+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMSF032K18+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMSF035G24+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMSF039O15+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMSF048I18+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMFS053D08+ GAAGTGCTTATCANCTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMSF015M07+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMFS039G06+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMFS073B07+ GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
JMFS065D07- GTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG
____________________________________________________________
consensus GAAGTGCTTATCAACTTCATATATAGTCTTCTAGAAGGAAAGGATGTTAATGGGAAAGAG

. : . : . : . : . : . :
JMSF048A03+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMFF001M06+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMSF037D18+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMSF031C06+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMSF032K18+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMSF035G24+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMSF039O15+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMSF048I18+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMFS053D08+ GTTCAAATACAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMSF015M07+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMFS039G06+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMFS073B07+ GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
JMFS065D07- GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC
____________________________________________________________
consensus GTTCAAATTCAACTGACTGGATTCATGGAAAGGAATACTGGAAAGTTCATGAAAGAGCTC

. : . : . : . : . : . :
JMSF048A03+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMFF001M06+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMSF037D18+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMSF031C06+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMSF032K18+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMSF035G24+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMSF039O15+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMSF048I18+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMFS053D08+ TGGTCACTACTCCTTAGTGCACAGAACAATGCANGTGGTGTTCCTCAGCAGTTCCTGGAT
JMSF015M07+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMFS039G06+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMFS073B07+ TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT
JMFS065D07- TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTC-GCAGTTCCTGGAT
____________________________________________________________
consensus TGGTCACTACTCCTTAGTGCACAGAACAATGCAAGTGGTGTTCCTCAGCAGTTCCTGGAT

. : . : . : . : . : . :
JMSF048A03+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMFF001M06+ GCCAA-GGAAGAGGAAACAAGGAAGAA
JMSF037D18+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMSF031C06+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMSF032K18+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMSF035G24+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMSF039O15+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMSF048I18+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMFS053D08+ GCCAAAGGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMSF015M07+ G
JMFS039G06+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMFS073B07+ GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
JMFS065D07- GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT
____________________________________________________________
consensus GCCAA-GGAAGAGGAAACAAGGAAGAAAAAGGCTGAGACTGATCGAATAACAAATGAAAT

. : . : . : . : . : . :
JMSF048A03+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGGACGG
JMSF037D18+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGG
JMSF031C06+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGA
JMSF032K18+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGG
JMSF035G24+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGG
JMSF039O15+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGGACGG
JMSF048I18+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGGACGG
JMFS053D08+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAA-GAAGGCGGACGG
JMFS039G06+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGGACGG
JMFS073B07+ ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGGACGG
JMFS065D07- ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGGACGG
____________________________________________________________
consensus ACAGAGGAGAAAAGAGAGAGAATATCAAGAACTTGAGCAAGAAAAAAAGAAGGCGGACGG

. : . : . : . : . : . :
JMSF048A03+ CGATGTTGACATTTCAAGAGATACGCATGCTGCTTTGGAACCATCTTCAAAGCATCACAC
JMSF039O15+ CGATGTTGACATTTCAAGAGATACGCATGCTGCTTTGGAACCATCTTCAAAGCATCACAC
JMSF048I18+ CGATGTTGACATTTCAAGAGATACGCATGCTGCTTTGGAACCATCTTCAAAGCATCACAC
JMFS053D08+ CAATGTAGACATTTCAAGAGATACGCATGCTGC
JMFS039G06+ CGATGTTGACATTTCAAGAGATACGCATGCTGCTTTGGAAC
JMFS073B07+ CGATGTTGACATTTCAAGAGATACGCATGCTGCTTTGGAA
JMFS065D07- CGATGTTGACATTTCAAGAGATACGCATGCTGCTTTGGAACCATCTTCAAAGCATCACAC
____________________________________________________________
consensus CGATGTTGACATTTCAAGAGATACGCATGCTGCTTTGGAACCATCTTCAAAGCATCACAC

. : . : . : . : . : . :
JMSF048A03+ TA
JMSF039O15+ TAG
JMSF048I18+ TAG
JMFS065D07- TAGGGATTCCCCCATGCCTTCAGCTGAAAAGGTGTATGCTGACAAAAATGGTTCAAGAGG
____________________________________________________________
consensus TAGGGATTCCCCCATGCCTTCAGCTGAAAAGGTGTATGCTGACAAAAATGGTTCAAGAGG

. : . : . : . : . : . :
JMFS065D07- AAGAAACAGGGCCTCAAGGTCTCCAAACTCAGCTGATCATTCACCACTACCAAGGGACAG
____________________________________________________________
consensus AAGAAACAGGGCCTCAAGGTCTCCAAACTCAGCTGATCATTCACCACTACCAAGGGACAG

. : . : . : . : . : . :
JMFS065D07- ACGTTCAAGGTCAATTAGCAGGTCATTTTCCAACTCTAGGAGTTACTCAGGGGAAAGGCG
____________________________________________________________
consensus ACGTTCAAGGTCAATTAGCAGGTCATTTTCCAACTCTAGGAGTTACTCAGGGGAAAGGCG

. : . : . : . : . : . :
JMFS065D07- TAGGTCAAGGAGTAGATCTAGTCCTGAACAAAGAGGGCGTTCCATATCTTCTGAAAGGGC
____________________________________________________________
consensus TAGGTCAAGGAGTAGATCTAGTCCTGAACAAAGAGGGCGTTCCATATCTTCTGAAAGGGC

. : . : . : . : . : . :
JMFS065D07- ACGCCCCTCTCCGGTGAAGCGGTCAATTACACCTCGCCATAAAT
____________________________________________________________
consensus ACGCCCCTCTCCGGTGAAGCGGTCAATTACACCTCGCCATAAAT