Alignment Contig 2238

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF023L02+ GACGGTGAACACTCCACTTTACTCTGCTGAGTGCTGACCAGAGGGCACAGAGAGAGAGAG
JMSF002O14+ ACTTTACTCTGCTGAGTGCTGACCAGAGGGCACAGAGAGAGAGAG
JMFF049I19+ AGAGAGAGAG
JMSF037D15+ AGAGAGAGAGAG
JMSF053O09+ GAGAGAGAGAG
JMFF015P18+ GAGAGAGAG
JMSF043F12+ AGAGAGAGAGAG
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consensus GACGGTGAACACTCCACTTTACTCTGCTGAGTGCTGACCAGAGGGCACAGAGAGAGAGAG

. : . : . : . : . : . :
JMSF023L02+ AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMSF002O14+ AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMFF049I19+ AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMSF037D15+ AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMSF053O09+ AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMFF015P18+ AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMSF043F12+ AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMFS035A11+ TTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
JMFS070B09+ TTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG
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consensus AGGCCTCTTTCTTTCACTACAGCTACTTTTTCTTCTGAAGATGATGAGATGAGATGGGAG

. : . : . : . : . : . :
JMSF023L02+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMSF002O14+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMFF049I19+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMSF037D15+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMSF053O09+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMFF015P18+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMSF043F12+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMFS035A11+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMSF043C02+ GAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
JMFS070B09+ AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC
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consensus AGAGAAAGAAGAGAAGAGACTTTAATTTATGTCTCTGATGATGAGTGACGATTGTTTAAC

. : . : . : . : . : . :
JMSF023L02+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMSF002O14+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMFF049I19+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMSF037D15+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMSF053O09+ ACGGTCGNCATCTTCTGATANTTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMFF015P18+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMSF043F12+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMFS035A11+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMSF043C02+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
JMFS070B09+ ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC
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consensus ACGGTCGTCATCTTCTGATAATTTGGCCTCTCTTTCTTCCTTTGCTGTATGTTGATATTC

. : . : . : . : . : . :
JMSF023L02+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT
JMSF002O14+ ATTAGTTTTATCTTTTTTAGAT
JMFF049I19+ ATTAGTTTTATCTTTTTCAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGT-ATTTTCT
JMSF037D15+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT
JMSF053O09+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGNTTCCTTTCCTCAGATCTGTGATTTTCN
JMFF015P18+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT
JMSF043F12+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT
JMFS035A11+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT
JMSF043C02+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT
JMFS070B09+ ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT
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consensus ATTAGTTTTATCTTTTTTAGATTAGATTTTAGTTTCCTTTCCTCAGATCTGTGATTTTCT

. : . : . : . : . : . :
JMSF023L02+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
JMFF049I19+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
JMSF037D15+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
JMSF053O09+ TTTTCTCCGNATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGNTG
JMFF015P18+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
JMSF043F12+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
JMFS035A11+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
JMSF043C02+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
JMFS070B09+ TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG
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consensus TTTTCTCCGTATTTTCCTCTACTTTGTAATCATCACTTCTTTGTTATTTTCCGGATGTTG

. : . : . : . : . : . :
JMSF023L02+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
JMFF049I19+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
JMSF037D15+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
JMSF053O09+ ATGATGATGATGANGANAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
JMFF015P18+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
JMSF043F12+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATCGAAAGTC
JMFS035A11+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
JMSF043C02+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
JMFS070B09+ ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC
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consensus ATGATGATGATGATGATAACTCTTCACCACAATAGTTTCCTCCTTTAGAAATTGAAAGTC

. : . : . : . : . : . :
JMSF023L02+ TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA
JMFF049I19+ TTATCCCAACAATAATTTCCTT
JMSF037D15+ TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA
JMSF053O09+ TTATCCCAACAATANTTTCCTTTCTCCTCCCTTCTCTACCCNAGACTCGAAGAATTCCCA
JMFF015P18+ TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA
JMSF043F12+ TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA
JMFS035A11+ TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA
JMSF043C02+ TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA
JMFS070B09+ TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA
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consensus TTATCCCAACAATAATTTCCTTTCTCCTCCCTTCTCTACCCTAGACTCGAAGAATTCCCA

. : . : . : . : . : . :
JMSF023L02+ GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA
JMSF037D15+ GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA
JMSF053O09+ GATCTCTTATCTCTTTCTGCTATCCCAAATNTGTGTATCTTNTAGTTTGANTTATNCATA
JMFF015P18+ GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA
JMSF043F12+ GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA
JMFS035A11+ GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA
JMSF043C02+ GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA
JMFS070B09+ GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA
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consensus GATCTCTTATCTCTTTCTGCTATCCCAAATCTGTGTATCTTTTAGTTTGATTTATACATA

. : . : . : . : . : . :
JMSF023L02+ ATTTTCTGGATCTACTGTTTTTTTTTT
JMSF037D15+ ATTTTCTGGATCTACTGTTTTTTTTTTNCCCNACTTNCCAAC
JMSF053O09+ ATTTTNNGGATCTACTGTTTTTTTTTTTCC
JMFF015P18+ ATTTTCTGGATCTACTGTTTTTTTTTTTCCCTA
JMSF043F12+ ATTTTCTGGATCTACTGTTTTTTTTTTNCCCNACTTNCCAAC
JMFS035A11+ ATTTTCTGGATCTACTGTTTTTTTTTTTCCCTACTTTCCAACTCAGATCTAGCTCTTCTC
JMSF043C02+ ATTTTCTGGATCTACTGTTTTTTTTTTTCCCTACTTTCCAACTCA
JMFS070B09+ ATTTTCTGGATCTACTGTTTTTTTTTTTCCCTACTTTCCAACTCAGATCTAGCTCTTCTC
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consensus ATTTTCTGGATCTACTGTTTTTTTTTTTCCCTACTTTCCAACTCAGATCTAGCTCTTCTC

. : . : . : . : . : . :
JMFS035A11+ TAGTTTATGTTTTTATTTTTACAGTCCCAAACAAAAATCCCTAGCTAGTTGGGAGTGTCT
JMFS070B09+ TAGTTTATGTTTTTATTTTTACAGTCCCAAACAAAAATCCCTAGCTAGTTGGGAGTGTCT
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consensus TAGTTTATGTTTTTATTTTTACAGTCCCAAACAAAAATCCCTAGCTAGTTGGGAGTGTCT

. : . : . : . : . : . :
JMFS035A11+ TGAATTCA
JMFS070B09+ TGAATTCAATCAAGAATTTGTTTCTAGTACTACTACTTTT
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consensus TGAATTCAATCAAGAATTTGTTTCTAGTACTACTACTTTT