Alignment Contig 2180

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF017C14+ GACATGTATTCATTCACAGCTTTATCCCCTTGTAATGAAATCAAATTGAGAGGTCGCGGA
JMSF004H04+ ACATGTATTCATTCACAGCTTTATCCCCTTGTAATGAAATCAAATTGAGAGGTCGCGGA
JMSF036N05+ ACATGTATTCATTCACAGCTTTATCCCCTTGTAATGAAATCAAATTGAGAGGTCGCGGA
JMFF021O23+ ACATGTATTCATTCACAGCTTTATCCCCTTGTAATGAAATCAAATTGAGAGGTCGCGGA
JMFF030J12+ ACATGTATTCATTCACAGCTTTATCCCCTTGTAATGAAATCAAATTGAGAGGTCGCGGA
____________________________________________________________
consensus GACATGTATTCATTCACAGCTTTATCCCCTTGTAATGAAATCAAATTGAGAGGTCGCGGA

. : . : . : . : . : . :
JMSF017C14+ AACCTCCTCTCTTCCCTTCTTTGATTTCTTTCATTCCCACCTAGTTTTTGTAGAGCTTGC
JMSF004H04+ AACCTCCTCTCTTCCCTTCTTTGATTTCTTTCATTCCCACCTAGTTTTTGTAGAGCTTGC
JMSF036N05+ AACCTCCTCTCTTCCCTTCTTTGATTTCTTTCATTCCCACCTAGTTTTTGTAGAGCTTGC
JMFF021O23+ AACCTCCTCTCTTCCCTTCTTTGATTTCTTTCATTCCCACCTAGNTTTTGTAGAGCTTGC
JMFF030J12+ AACCTCCTCTCTTCCCTTCTTTGATTTCTTTCATTCCCACCTAGTTTTTGTAGAGCTTGC
____________________________________________________________
consensus AACCTCCTCTCTTCCCTTCTTTGATTTCTTTCATTCCCACCTAGTTTTTGTAGAGCTTGC

. : . : . : . : . : . :
JMSF017C14+ AAGAATTCCCATATTTTCTTTGGCTTAATTTCCACAAAAAAGATTACTGTTTTAACACAA
JMSF004H04+ AAGAATTCCCATATTTTCTTTGGCTTAATTTCCACAAAAAAGATTACTGTTTTAACACAA
JMSF036N05+ AAGAATTCCCATATTTTCTTTGGCTTAATTTCCACAAAAAAGATTACTGTTTTAACACAA
JMFF021O23+ AAGAATTCCCATATTTTCTTTGGCTTAATTTCCACAAAAAAGATTACTGTTTTAACACAA
JMFF030J12+ AAGAATTCCCATATTTTCTTTGGCTTAATTTCCACAAAAAAGATTACTGTTTTAACACAA
____________________________________________________________
consensus AAGAATTCCCATATTTTCTTTGGCTTAATTTCCACAAAAAAGATTACTGTTTTAACACAA

. : . : . : . : . : . :
JMSF017C14+ ATATGGCAAGTGAGAAGCTGAGGATATGCATAAAGGAAACCACAATGGTGAAACCAGCCA
JMSF004H04+ ATATGGCAAGTGAGAAGCTGAGGATATGCATAAAGGAAACCACAATGGTGAAACCAGCCA
JMSF036N05+ ATATGGCAAGTGAGAAGCTGAGGATATGCATAAAGGAAACCACAATGGTGAAACCAGCCA
JMFF021O23+ ATATGGCAAGTGAGAAGCTGAGGATATGCATAAAGGAAACCACAATGGTGAAACCAGCCA
JMFF030J12+ ATATGGCAAGTGAGAAGCTGAGGATATGCATAAAGGAAACCACAATGGTGAAACCAGCCA
____________________________________________________________
consensus ATATGGCAAGTGAGAAGCTGAGGATATGCATAAAGGAAACCACAATGGTGAAACCAGCCA

. : . : . : . : . : . :
JMSF017C14+ AGCCTACACCAAGCAAGAAGTTGTGGTGCTCAAATGTGGATTTGGTAGTGGGGAGGATCC
JMSF004H04+ AGCCTACACCAAGCAAGAAGTTGTGGTGCTCAAATGTGGATTTGGTAGTGGGGAGGATCC
JMSF036N05+ AGCCTACACCAAGCAAGAAGTTGTGGTGCTCAAATGTGGATTTGGTAGTGGGGAGGATCC
JMFF021O23+ AGCCTACACCAAGCAAGAAGTTGTGGTGCTCAAATGTGGATTTGGTAGTGGGGAGGATCC
JMFF030J12+ AGCCTACACCAAGCAAGAAGTTGTGGTGCTCAAATGTGGATTTGGTAGTGGGGAGGATCC
____________________________________________________________
consensus AGCCTACACCAAGCAAGAAGTTGTGGTGCTCAAATGTGGATTTGGTAGTGGGGAGGATCC

. : . : . : . : . : . :
JMSF017C14+ ATTTGTTGGTGGTTTACTTTTACAGGCCCAATGGGTCTCCAAACTTCTTTGATCCCAAGG
JMSF004H04+ ATTTGTTGGTGGTTTACTTTTACAGGCCCAA
JMSF036N05+ ATTTGTTGGTGGTTTACTTTTACAGGCCCAATGGGTCTCCAAACTTCTTTGATCCCAAGG
JMFF021O23+ ATTTGTTGGTGGTTTACTTTTACAGGCCCAATGGGTCTCCAAACTTCTTTGATCCCAAGG
JMFF030J12+ ATTTGTTGGTGGTTTACTTTTACAGGCCCAATGGGTCTCCAAACTTCTTTGATCCCAAGG
____________________________________________________________
consensus ATTTGTTGGTGGTTTACTTTTACAGGCCCAATGGGTCTCCAAACTTCTTTGATCCCAAGG

. : . : . : . : . : . :
JMSF017C14+ CGATGAAGGAAGCCCTGAGCAGAGTTCTGGTTTCGTTCTATCC
JMSF036N05+ CGATGAAGGAAGCCCTGAGCAGAGTTCTGGTTTCGTTCTATCCAATGGCGGGTAGGATGG
JMFF021O23+ CGATGAAGGAAGCCCTGAGCAGAGTTCTGGTTTCGTTCTATCCAATGGCGGGT
JMFF030J12+ CGATGAAGGAAGCCCTGAGCAGAGTTCTGGTTTCGTTCTATCCAATGGCGGGT
____________________________________________________________
consensus CGATGAAGGAAGCCCTGAGCAGAGTTCTGGTTTCGTTCTATCCAATGGCGGGTAGGATGG

. : . : . : . : . : . :
JMSF036N05+ GTAGGGATGGAGATGGGGAGGCTTGAGATTGAGTGTAATGGAGAAGGGGCTTTGTTTGTG
____________________________________________________________
consensus GTAGGGATGGAGATGGGGAGGCTTGAGATTGAGTGTAATGGAGAAGGGGCTTTGTTTGTG

. : . : . : . : . : . :
JMSF036N05+ GANGCCNANAGTGACNCNNCNNTTGANGATTTTGGGGACTTTACTCCNANNTTGNANCTC
____________________________________________________________
consensus GANGCCNANAGTGACNCNNCNNTTGANGATTTTGGGGACTTTACTCCNANNTTGNANCTC

. : . : . : . : . : . :
JMSF036N05+ ANGAANCTCCTCCCCTCTGNTGANACNTCNGGNNACNTTTCTTCCTTCCCNCTTGCCCNT
____________________________________________________________
consensus ANGAANCTCCTCCCCTCTGNTGANACNTCNGGNNACNTTTCTTCCTTCCCNCTTGCCCNT

. : . : . : . : . : . :
JMSF036N05+ TTCCNNGNCNCNCNT
____________________________________________________________
consensus TTCCNNGNCNCNCNT