Alignment Contig 2118

                          .    :    .    :    .    :    .    :    .    :    .    :

JMSF009L02+ GGACTCTGCTCTTTCTCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT
JMSF017P09+ GGACTCTGCTCTTTCTCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT
JMSF004E24+ GGACTCTGCTCTTTCTCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT
JMSF022A17+ GGACTCTGCTCTTTCTCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT
JMFS140F08+ TCTCTCTCTCT
JMFS091C10+ TCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT
JMFS049H11+ TTTCTCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT
JMFF044L18+ GACTCTGCTCTTTCTCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT
____________________________________________________________
consensus GGACTCTGCTCTTTCTCTCTCTGCAAATCAGCATCACGCGCCCTCTCTCTCTCTCTCTCT

. : . : . : . : . : . :
JMSF009L02+ CTATCTCTCTC--TTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG
JMSF017P09+ CTCTCTCTCTCTCTTGAATCTCTGTGTTTTTCTGGGTTTCNGANGATAANCAAATCTGAG
JMSF004E24+ CTCTCTCTCTCTCTTGAATCTCTGTGTTTTTCTGGGTTTCNGANGATAAGCAAATCTGAG
JMSF022A17+ CTATCTCTCTC--TTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG
JMFS140F08+ CTCTATCTCTCTCTTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG
JMFS091C10+ CTATCTCTCTC--TTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG
JMFS049H11+ CTATCTCTCTC--TTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG
JMFF044L18+ CTATCTCTCTC--TTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG
JMFS110B04+ TCTCTTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG
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consensus CTATCTCTCTC--TTGAATCTCTGTGTTTTTCTGGGTTTCTGAGGATAAGCAAATCTGAG

. : . : . : . : . : . :
JMSF009L02+ TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA
JMSF017P09+ TGCCTGATTTGGACCTTCATTCANTGGAGCTT
JMSF004E24+ TGCCTGATTTGGACCTTCATTCNNTGGAGCTTAGACTAGATTAANAAACTCANNCAGCAA
JMSF022A17+ TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA
JMFS140F08+ TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA
JMFS091C10+ TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA
JMFS049H11+ TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA
JMFF044L18+ TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA
JMFS110B04+ TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA
____________________________________________________________
consensus TGCCTGATTTGGACCTTCATTCACTGGAGCTTAGACTAGATTAAGAAACTCAACCAGCAA

. : . : . : . : . : . :
JMSF009L02+ CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT
JMSF004E24+ CANCTGTGGCGAACTTGCAGAGTGAANAANACTATGCGGGGGTATAGTCTTTCAATTGNT
JMSF022A17+ CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT
JMFS140F08+ CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT
JMFS091C10+ CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT
JMFS049H11+ CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT
JMFF044L18+ CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT
JMFS110B04+ CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT
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consensus CAGCTGTGGCGAACTTGCAGAGTGAAGAACACTATGCGGTGGTATAGTCTTTCAATTGAT

. : . : . : . : . : . :
JMSF009L02+ GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT
JMSF004E24+ GTGTTTCNGAAAGNGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGNAAAATTGACCT
JMSF022A17+ GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT
JMFS140F08+ GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT
JMFS091C10+ GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT
JMFS049H11+ GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT
JMFF044L18+ GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT
JMFS110B04+ GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT
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consensus GTGTTTCGGAAAGTGATCTCCTTGAACTTGTACTGCCGTGTGATTCTGTAAAATTGACCT

. : . : . : . : . : . :
JMSF009L02+ CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT
JMSF004E24+ CGCTCNTGTAATCAG
JMSF022A17+ CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT
JMFS140F08+ CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT
JMFS091C10+ CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT
JMFS049H11+ CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT
JMFF044L18+ CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT
JMFS110B04+ CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT
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consensus CGCTCTTGTAATCAGTTCTTGATTTATTGCTCATTTCACCCCCCTAGAGAATAGTTTGTT

. : . : . : . : . : . :
JMSF009L02+ GTGCTTCTTGCAATGGGATCCACTCGTTTCANTGTCATTCCNTGCTACGTCCGCTGGATT
JMSF022A17+ GTGCTTCTTGCAATGGGATCCACTCGTTTCATTGTCATTCCTTGCTACGTCCGCTGGATT
JMFS140F08+ GTGCTTCTTGCAATGGGATCCACTCGTTTCATTGTCATTCCTTGCTACGTCCGCTGGATT
JMFS091C10+ GTGCTTCTTGCAATGGGATCCACTCGTTTCATTGTCATTCCTTGCTACGTCCGCTGGATT
JMFS049H11+ GTGCTTCTTGCAATGGGATCCACTCGTTTCATTGTCATTCCTTGCTACGTCCGCTGGATT
JMFF044L18+ GTGCTTCTTGCAATGGGATCCACTCGTTTCATTGTCATTCCTTGCTACGTCCGCTGGATT
JMFS110B04+ GTGCTTCTTGCAATGGGATCCACTCGTTTCATTGTCATTCCTTGCTACGTCCGCTGGATT
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consensus GTGCTTCTTGCAATGGGATCCACTCGTTTCATTGTCATTCCTTGCTACGTCCGCTGGATT

. : . : . : . : . : . :
JMSF009L02+ AG
JMSF022A17+ AGCTGAGATTTACCTTCTTTTCCGGCTTCCTCCCTGTTGTTTTCTCGAAGATTTTTGAAC
JMFS140F08+ AGCTGAGATTTACCTTCTTTTCCGGCTTCCTCCCTGTTGTTTTCTCGAAGATTTTTGAAC
JMFS091C10+ AGCTGAGATTTACCTTCTTTTCCGGCTTCCTCCCTGTTGTTTTCTCGAAGATTTTTGAAC
JMFS049H11+ AGCTGAGATTTACCTTCTTTTCCGGCTTCCTCCCTGTTGTTTTCTCGAAGATTTTTGAAC
JMFF044L18+ AGCTGAGATTTACCTTCTTTTCCGGCTTCCTCCCTGTTGTTTTCTCGAAGATTTTTGAAC
JMFS110B04+ AGCTGAGATTTACCTTCTTTTCCGGCTTCCTCCCTGTTGTTTTCTCGAAGATTTTTGAAC
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consensus AGCTGAGATTTACCTTCTTTTCCGGCTTCCTCCCTGTTGTTTTCTCGAAGATTTTTGAAC

. : . : . : . : . : . :
JMSF022A17+ CATTGCCTTTCTAGCGTTTGCTTGTTTGTGTCTGTTTTGATTCGGTGTTGTAGATTTAGT
JMFS140F08+ CATTGCCTTTCTAGCGTTTGCTTGTTTGTGTCTGTTTTGATTCGGTGTTGTAGATTTAGT
JMFS091C10+ CATTGCCTTTCTAGCGTTTGCTTGTTTGTGTCTGTTTTGATTCGGTGTTGTAGATTTAGT
JMFS049H11+ CATTGCCTTTCTAGCGTTTGCTTGTTTGTGTCTGTTTTGATTCGGTGTTGTAGATTTAGT
JMFF044L18+ CATTGCCTTTCTAGCGTTTGCTTGTTTGTGTCTGTTTTGATTCGGTGTTGTAGATTTAGT
JMFS110B04+ CATTGCCTTTCTAGCGTTTGCTTGTTTGTGTCTGTTTTGATTCGGTGTTGTAGATTTAGT
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consensus CATTGCCTTTCTAGCGTTTGCTTGTTTGTGTCTGTTTTGATTCGGTGTTGTAGATTTAGT

. : . : . : . : . : . :
JMSF022A17+ CTCGAGAGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT
JMFS140F08+ CTCGAGAGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT
JMFS091C10+ CTCGAGAGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT
JMFS049H11+ CTCGAGAGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT
JMFF044L18+ CTCGAGAGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT
JMFS110B04+ CTCGAGAGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT
JMSF024J12+ AGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT
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consensus CTCGAGAGTATTCAATTCTAAAGCCTTGCCAATCAAGTTTGTGTCTTTAGTCTTGAGAGT

. : . : . : . : . : . :
JMSF022A17+ ATTCAATTCTAAGCATTGCCAATCGGTATCTGGTGGGTATTTCTTGTGTGGTTTTGAGTA
JMFS140F08+ ATTCAATTCTAAGCATTGCCAATCGGTATCTGGTGGGTATTTCTTGTGTGGTTTTGAGTA
JMFS091C10+ ATTCAATTCTAAGCATTGCCAATCGGTATCTGG
JMFS049H11+ ATTCAATTCTAAGCATTGCCAATCGGTATC
JMFF044L18+ ATTCAATTCTAAGCATTGCCAATCGGTATCTG
JMFS110B04+ ATTCAATTCTAAGCATTGCCAATCGGTATCTGGTGGGTATTTCTTGTGTGGTTTTGAGTA
JMSF024J12+ ATTCAATTCTAAGCATTGCCAATCGGTATCTGGTGGGTATTTCTTGTGTGGTTTTGAGTA
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consensus ATTCAATTCTAAGCATTGCCAATCGGTATCTGGTGGGTATTTCTTGTGTGGTTTTGAGTA

. : . : . : . : . : . :
JMSF022A17+ AAAGGTGCGAGTGTTTGGGATCT
JMFS140F08+ AAAG
JMFS110B04+ AAAGGTGCGAGTGTTTGGGATCT
JMSF024J12+ AAAGGTGCGAGTGTTTGGGATCTTTGATAATTTTTTGCTGGAAGATTGCGGTGTTGCTTT
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consensus AAAGGTGCGAGTGTTTGGGATCTTTGATAATTTTTTGCTGGAAGATTGCGGTGTTGCTTT

. : . : . : . : . : . :
JMSF024J12+ GTGAGGAAGGGTTGGGAACAAGTAGTTATGGTAAGCCAAGCAGCTAGTAAGACGAGATTC
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consensus GTGAGGAAGGGTTGGGAACAAGTAGTTATGGTAAGCCAAGCAGCTAGTAAGACGAGATTC

. : . : . : . : . : . :
JMSF024J12+ CGGGCATTGAAACATGAAAATGGAGTTGCGGGGAGTGCCACCATAATAGTTAGAGTCATA
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consensus CGGGCATTGAAACATGAAAATGGAGTTGCGGGGAGTGCCACCATAATAGTTAGAGTCATA

. : . : . : . : . : . :
JMSF024J12+ GCATGCTTTCAACCTCTCCAGGATTGCCAGGCTGAATATTTCCGTCACTTGTTGAAACCT
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consensus GCATGCTTTCAACCTCTCCAGGATTGCCAGGCTGAATATTTCCGTCACTTGTTGAAACCT

. : . : . : . : . : . :
JMSF024J12+ GTAACGTAGATTGATTTTCTTTCCACTGCATTCAAGTTAAGCCGAAGATTTTTCATTTTT
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consensus GTAACGTAGATTGATTTTCTTTCCACTGCATTCAAGTTAAGCCGAAGATTTTTCATTTTT

. : . : . : . : . : . :
JMSF024J12+ CATTATTTCTCAATATCTCAAGAAGTGTTCAGCAGATCGTAGTACCAAAAACTATCGTAG
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consensus CATTATTTCTCAATATCTCAAGAAGTGTTCAGCAGATCGTAGTACCAAAAACTATCGTAG

. : . : . : . : . : . :
JMSF024J12+ AACTGGTGATTGCTGCAATTGAATGGAAAAGGACTTTAATTCTTGGTTCCAGCACCGGTG
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consensus AACTGGTGATTGCTGCAATTGAATGGAAAAGGACTTTAATTCTTGGTTCCAGCACCGGTG

. : . : . : . : . : . :
JMSF024J12+ TTTAGACGTGCAATCACCCGTCTTGAATTCTTCGGGTGCACGAGTTGATACACAACTGCA
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consensus TTTAGACGTGCAATCACCCGTCTTGAATTCTTCGGGTGCACGAGTTGATACACAACTGCA

. : . : . : . : . : . :
JMSF024J12+ GAATAATTTTTCTGCATTTATGATTCCTTGTTACAATGGGGTATCGACAAATGGGAATTT
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consensus GAATAATTTTTCTGCATTTATGATTCCTTGTTACAATGGGGTATCGACAAATGGGAATTT

. : . : . : . : . : . :
JMSF024J12+ TCCCTTGTCCTCGTATACTGCCCCGCTGCAGTTTAGGG
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consensus TCCCTTGTCCTCGTATACTGCCCCGCTGCAGTTTAGGG