Alignment Contig 1843

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFN032D15- AATGCAAACAATTGCAACCAGAATCCGCCCTCATGGTTTACCATCTAAAATAAATAAATA
rJMFF043O10+ AAAATAAATAAATA
JMFN044G14- AAAATAAATAAATA
rJMFF010E09+ TA
____________________________________________________________
consensus AATGCAAACAATTGCAACCAGAATCCGCCCTCATGGTTTACCATCTAAAATAAATAAATA

. : . : . : . : . : . :
JMFN032D15- AATTATCCAAAACCGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTT-AAGAT
rJMFF043O10+ AATTATCCAAAACCGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTT-AAGAT
JMFN044G14- AATTATCCAAAACCGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTT-AAGAT
rJMFF010E09+ AATTATCCAAAACCGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTT-AAGAT
rJMFF039F05+ ATTATCCAAAACCGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTT-AAGAT
rJMFF008P23+ ATTATCCAAAACCGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTT-AAGAT
rJMSF019H18+ CGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTTTAAGAT
____________________________________________________________
consensus AATTATCCAAAACCGAAGCGTTTTAGCATCTAAAGCAACACCCCAACCAAGTTT-AAGAT

. : . : . : . : . : . :
JMFN032D15- GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC
rJMFF043O10+ GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC
JMFN044G14- GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC
rJMFF010E09+ GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC
rJMFF039F05+ GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC
rJMFF008P23+ GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC
rJMSF019H18+ GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC
rJMFF031N06+ ATGGACATTGACATAAACAATGAGAAATCAC
____________________________________________________________
consensus GAAAAGAAAATGTCATGAATAGAATGAACATGGACATTGACATAAACAATGAGAAATCAC

. : . : . : . : . : . :
JMFN032D15- AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
rJMFF043O10+ AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
JMFN044G14- AAATTAAAGTTATCTTTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
rJMFF010E09+ AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
rJMFF039F05+ AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
rJMFF008P23+ AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
rJMSF019H18+ AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
rJMFF031N06+ AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
rJMSF048H03+ CTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA
____________________________________________________________
consensus AAATTAAAGTTATCTCTGAGGTGCACTCTGAACTAGCCCGACTCAGTGTTTGGATTCAGA

. : . : . : . : . : . :
JMFN032D15- ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
rJMFF043O10+ ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
JMFN044G14- ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
rJMFF010E09+ ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
rJMFF039F05+ ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
rJMFF008P23+ ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
rJMSF019H18+ ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
rJMFF031N06+ ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
rJMSF048H03+ ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG
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consensus ATCCGTCTTTGAACATAAGTGAATAGAGTAGATGGAGATACAAATTGTACAAAATGGCGG

. : . : . : . : . : . :
JMFN032D15- CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
rJMFF043O10+ CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
JMFN044G14- CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
rJMFF010E09+ CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
rJMFF039F05+ CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
rJMFF008P23+ CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
rJMSF019H18+ CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
rJMFF031N06+ CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
rJMSF048H03+ CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC
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consensus CTACCTCAGCTCGCGTACGCTCTGAGGAAACAATCATGTTCAAGAAATCACCAAGACTGC

. : . : . : . : . : . :
JMFN032D15- CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG
rJMFF043O10+ CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCGGATTGCCCACTAGG
JMFN044G14- CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG
rJMFF010E09+ CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG
rJMFF039F05+ CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCGGATTGCCCACTAGG
rJMFF008P23+ CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG
rJMSF019H18+ CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG
rJMFF031N06+ CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG
rJMSF048H03+ CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG
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consensus CAGAAGAATGCACATGCTGATCATGGAAATGCTAGCGGTGATTGCAGATTGCCCACTAGG

. : . : . : . : . : . :
JMFN032D15- AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
rJMFF043O10+ AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
JMFN044G14- AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
rJMFF010E09+ AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
rJMFF039F05+ AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
rJMFF008P23+ AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
rJMSF019H18+ AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
rJMFF031N06+ AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
rJMSF048H03+ AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC
____________________________________________________________
consensus AGGAGCATTAGGCCCTGGAGCTGATCCATTATTGTTACTAGCTGGAGCAATCTTGGCAAC

. : . : . : . : . : . :
JMFN032D15- TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
rJMFF043O10+ TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
JMFN044G14- TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
rJMFF010E09+ TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
rJMFF039F05+ TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
rJMFF008P23+ TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
rJMSF019H18+ TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
rJMFF031N06+ TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
rJMSF048H03+ TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC
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consensus TGGGGGTAGAGGTGGCTCCACCACATCGCTCTCTGTCAGTACAGGATAGGGAGCCTCCGC

. : . : . : . : . : . :
JMFN032D15- TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
rJMFF043O10+ TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTG
JMFN044G14- TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
rJMFF010E09+ TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
rJMFF039F05+ TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
rJMFF008P23+ TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
rJMSF019H18+ TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
rJMFF031N06+ TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
rJMSF048H03+ TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT
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consensus TGGTGGTAAATACTGAGGACTCATGAGTTGAAGAAGACTGCCAGGTCCAACTGGGAGCAT

. : . : . : . : . : . :
JMFN032D15- GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGC
JMFN044G14- GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGC
rJMFF010E09+ GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGCGCCTGTATCTATTAGCTGTGGC
rJMFF039F05+ GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGCGCCTGTATCTATTAGCTGTGGC
rJMFF008P23+ GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGCGCCTGTATCTATTAGCTGTGGC
rJMSF019H18+ GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGCGCCTGTATCTATTAGCTGTGGC
rJMFF031N06+ GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGCGCCTGTATCTATTAGCTGTGGC
rJMSF048H03+ GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGCGCCTGTATCTATTAGCTGTGGC
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consensus GTATGGAGGTATCTCCTTGTACCCAAGACAACGGTTGCGCCTGTATCTATTAGCTGTGGC

. : . : . : . : . : . :
rJMFF010E09+ CGGGAAGCCTGTTATAACACCATCAAAAGGATTTGCACTGGCACCAAAAACATAGCTATT
rJMFF039F05+ CGGGAAGCCTGTTATAACACCATCAAAAGGATTTGCACTGGCACCAAAAACATAGCTATT
rJMFF008P23+ CGGGAAGCCTGTTATAACACCATCAAAAGGATTTGCACTGGCACCAAAAACATAGCTATT
rJMSF019H18+ CGGGAAGCCTGTTATAACACCATCAAAAGGATTTGCACTGGCACCAAAAACATAGCTATT
rJMFF031N06+ CGGGAAGCCTGTTATAACACCATCAAAAGGATTTGCACTGGCACCAAAAACATAGCTATT
rJMSF048H03+ CGGGAAGCCTGTTATAACACCATCAAAAGGATTTGCACTGGCACCAAAAACATAGCTATT
____________________________________________________________
consensus CGGGAAGCCTGTTATAACACCATCAAAAGGATTTGCACTGGCACCAAAAACATAGCTATT

. : . : . : . : . : . :
rJMFF010E09+ TAACTCCACATATGGATCTGAGAAGAAGTCCCATGCTTGAGATAC-AAACTCGTTGCTGA
rJMFF039F05+ TAACTCCACATATGGATCTGAGAAGAAGTCCCATGCTTGAGATACCAAACTCGTTGCTGA
rJMFF008P23+ TAACTCCACATATGGATCTGAGAAGAAGTCCCATGCTTGAGATAC-AAACTCGTTGCTGA
rJMSF019H18+ TAACTCCACATATGGATCTGAGAAGAAGTCCCATGCTTGAGATAC-AAACTCGTTGCTGA
rJMFF031N06+ TAACTCCACATATGGATCTGAGAAGAAGTCCCATGCTTGAGATAC-AAACTCGTTGCTGA
rJMSF048H03+ TAACTCCACATATGGATCTGAGAAGAAGTCCCATGCTTGAGATAC-AAACTCGTTGCTGA
____________________________________________________________
consensus TAACTCCACATATGGATCTGAGAAGAAGTCCCATGCTTGAGATAC-AAACTCGTTGCTGA

. : . : . : . : . : . :
rJMFF010E09+ AGAGTTGCACGTATACTTTAACCTTGGAAGCTTGCAGCTTTGCTACAACAT
rJMFF039F05+ ANAGTTGCACGTATACTT
rJMFF008P23+ AGAGTTGCACGTATACTTTAACCTTGGAAGCTTGCAGCTTTGCTACAACATTTGTTACCC
rJMSF019H18+ AGAGTTGCACGTATACTTTAACCTTGGAAGCTTGCAGCTTTGCTACAACATTTGTTACCC
rJMFF031N06+ AGAGTTGCACGTATACTTTAACCTTGGAAGCTTGCAGCTTTGCTACAACATTTGTTACCC
rJMSF048H03+ AGAGTTGCACGTATACTTTAACCTTGGAAGCTTGCAGCTTTGCTACAACATTTGTTACCC
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consensus AGAGTTGCACGTATACTTTAACCTTGGAAGCTTGCAGCTTTGCTACAACATTTGTTACCC

. : . : . : . : . : . :
rJMFF008P23+ C
rJMSF019H18+ CAACGAGGAATGAATCATCAGTTG
rJMFF031N06+ CAACGAGGAATGAATCATCAGTTGGAAACACGGAAGATTTGCCTATGATTACAGAACTTG
rJMSF048H03+ CAACGAGGAATGAATCATCAGTTGGAAACACGGAAGATTTGCCTATGATTACAGAACTTG
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consensus CAACGAGGAATGAATCATCAGTTGGAAACACGGAAGATTTGCCTATGATTACAGAACTTG

. : . : . : . : . : . :
rJMFF031N06+ CAAACTTCTTGATCTC
rJMSF048H03+ CAAACTTCTTGATCTCCAGAATAGTTGAGTTCTGAATATCACTGATTTCCTCCTTAATCC
JMFF031N06- TCTCCAGAATAGTTGAGTTCTGAATATCACTGATTTCCTCCTTAATCC
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consensus CAAACTTCTTGATCTCCAGAATAGTTGAGTTCTGAATATCACTGATTTCCTCCTTAATCC

. : . : . : . : . : . :
rJMSF048H03+ CATAA-CACGTTCATACTTGCTATTTGTAA
JMFF031N06- CATAAACACGTTCATACTTGCTATTTGTAAATTTCATCAGAACTGAGCTGTCATTTGAGT
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consensus CATAAACACGTTCATACTTGCTATTTGTAAATTTCATCAGAACTGAGCTGTCATTTGAGT

. : . : . : . : . : . :
JMFF031N06- GAATCATAACTTTCTTGGTTTTCAGATCAGCTTTGTTGAGAGCAAGTAGAACAGCATCAG
____________________________________________________________
consensus GAATCATAACTTTCTTGGTTTTCAGATCAGCTTTGTTGAGAGCAAGTAGAACAGCATCAG

. : . : . : . : . : . :
JMFF031N06- TCACACCTAGTCCCTTCTTTTCTGCCAGGTATGCCGCATTCTCTACGGTAATGAGAACAC
____________________________________________________________
consensus TCACACCTAGTCCCTTCTTTTCTGCCAGGTATGCCGCATTCTCTACGGTAATGAGAACAC

. : . : . : . : . : . :
JMFF031N06- CAGAAACAGATGTAGCATTTGCAGCAAATGTCAAAAAATCATCAAGCGTCATAAATTTCC
____________________________________________________________
consensus CAGAAACAGATGTAGCATTTGCAGCAAATGTCAAAAAATCATCAAGCGTCATAAATTTCC

. : . : . : . : . : . :
JMFF031N06- CCTCATTTTTTGCTACTGGATTCCGGAACAATCTAAATTTTGCAAATGGGTTTGATATTT
____________________________________________________________
consensus CCTCATTTTTTGCTACTGGATTCCGGAACAATCTAAATTTTGCAAATGGGTTTGATATTT

. : . : . : . : . : . :
JMFF031N06- GTGCTTGTAGGCTCTGGATATCTTTCCAATTGAGGTCAAAACTATGTATTGCATTTTGTG
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consensus GTGCTTGTAGGCTCTGGATATCTTTCCAATTGAGGTCAAAACTATGTATTGCATTTTGTG

. : . : . : . : . : . :
JMFF031N06- TTTTGAGCTCTGGAATGCTAACAGCAAGGTTGCTGAATTGTTGAGCAGCTGTAGTCCCAT
____________________________________________________________
consensus TTTTGAGCTCTGGAATGCTAACAGCAAGGTTGCTGAATTGTTGAGCAGCTGTAGTCCCAT

. : . : . : . : . : . :
JMFF031N06- CTATCATATTTACAGAACCCATGCAGAAAGGTATTCCATCCTTTGTCATTTGGA
____________________________________________________________
consensus CTATCATATTTACAGAACCCATGCAGAAAGGTATTCCATCCTTTGTCATTTGGA