Alignment Contig 1746

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF040A08+ ATGAAGCATATGTGCAAGCAGTAGTCTTCATTATTCAGATCTACTTCAACTCCAAGTCTA
JMFF005P10+ TTATTCAGATCTACTTCAACTCCAAGTCTA
JMFF023L03+ AAGTTTA
JMFF014N20+ TTATTCAGATCTACTTCAACTCCAAGTCTA
JMFF033D21+ TTATTCAGATCTACTTCAACTCCAAGTCTA
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consensus ATGAAGCATATGTGCAAGCAGTAGTCTTCATTATTCAGATCTACTTCAACTCCAAGTCTA

. : . : . : . : . : . :
JMFF040A08+ GAGCGGGAGAAGTTTAGAGAGGGAGTGAATCCTTAGTTGAGAATTGAGATGGATGAGAAG
JMFF005P10+ GAGCGGGAGAAGTTTAGAGAGGGAGTGAATCCTTAGTTGAGAATTGAGATGGATGAGAAG
JMFF023L03+ GAGCGGGAGAAGTTTAGAGAGGGAGTGAATCCTTAGTTGAGAATTGAGATGGATGAGAAG
JMFF014N20+ GAGCGGGAGAAGTTTAGAGAGGGAGTGAATCCTTAGTTGAGAATTGAGATGGATGAGAAG
JMFF033D21+ GAGCGGGAGAAGTTTAGAGAGGGAGTGAATCCTTAGTTGAGAATTGAGATGGATGAGAAG
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consensus GAGCGGGAGAAGTTTAGAGAGGGAGTGAATCCTTAGTTGAGAATTGAGATGGATGAGAAG

. : . : . : . : . : . :
JMFF040A08+ TTGATACAGCGGTTGGAGTCGGCGGTAGCTCGACTGGAGACGCTGTCCACCGGCGGATTT
JMFF005P10+ TTGATACAGCGGTTGGAGTCGGCGGTAGCTCGACTGGAGACGCTGTCCACCGGCGGATTT
JMFF023L03+ TTGATACAGCGGTTGGAGTCGGCGGTAGCTCGACTGGAGACGCTGTCCACCGGCGGATTT
JMFF014N20+ TTGATACAGCGGTTGGAGTCGGCGGTAGCTCGACTGGAGACGCTGTCCACCGGCGGATTT
JMFF033D21+ TTGATACAGCGGTTGGAGTCGGCGGTAGCTCGACTGGAGACGCTGTCCACCGGCGGATTT
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consensus TTGATACAGCGGTTGGAGTCGGCGGTAGCTCGACTGGAGACGCTGTCCACCGGCGGATTT

. : . : . : . : . : . :
JMFF040A08+ GGCCATGGAACTTCGCGTGAGGTTGACGTTAGTGCGGCGGCGTCGGATCCATCGATCGTT
JMFF005P10+ GGCCATGGAACTTCGCGTGAGGTTGACGTTAGTGCGGCGGCGTCGGATCCATCGATCGTT
JMFF023L03+ GGCCATGGAACTTCGCGTGAGGTTGACGTTAGTGCGGCGGCGTCGGATCCATCGATCGTT
JMFF014N20+ GGCCATGGAACTTCGCGTGAGGTTGACGTTAGTGCGGCGGCGTCGGATCCATCGATCGTT
JMFF033D21+ GGCCATGGAACTTCGCGTGAGGTTGACGTTAGTGCGGCGGCGTCGGATCCATCGATCGTT
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consensus GGCCATGGAACTTCGCGTGAGGTTGACGTTAGTGCGGCGGCGTCGGATCCATCGATCGTT

. : . : . : . : . : . :
JMFF040A08+ GCATTCGAAGATCTGATTTCGCAGTGCGTCGGGAGGCTGTCGAGTGCTGCTGAGAAGATT
JMFF005P10+ GCATTCGAAGATCTGATTTCGCAGTGCGTCGGGAGGCTGTCGAGTGCTGCTGAGAAGATT
JMFF023L03+ GCATTCGAAGATCTGATTTCGCAGTGCGTCGGGAGGCTGTCGAGTGCTGCTGAGAAGATT
JMFF014N20+ GCATTCGAAGATCTGATTTCGCAGTGCGTCGGGAGGCTGTCGAGTGCTGCTGAGAAGATT
JMFF033D21+ GCATTCGAAGATCTGATTTCGCAGTGCGTCGGGAGGCTGTCGAGTGCTGCTGAGAAGATT
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consensus GCATTCGAAGATCTGATTTCGCAGTGCGTCGGGAGGCTGTCGAGTGCTGCTGAGAAGATT

. : . : . : . : . : . :
JMFF040A08+ GGAGGACAAGTTTTGGATGCTACTAAGATTGTAAAGGATGCATTCTCTGCTCAGAAGGAG
JMFF005P10+ GGAGGACAAGTTTTGGATGCTACTANGATTGTAAAGGATGCATTCTCTGCTCANAAGGAG
JMFF023L03+ GGAGGACAAGTTTTGGATGCTACTAAGATTGTAAAGGATGCATTCTCTGCTCAGAAGGAG
JMFF014N20+ GGAGGACAAGTTTTGGATGCTACTAAGATTGTAAAGGATGCATTCTCTGCTCAGAAGGAG
JMFF033D21+ GGAGGACAAGTTTTGGATGCTACTAAGATTGTAAAGGATGCATTCTCTGCTCAGAAGGAG
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consensus GGAGGACAAGTTTTGGATGCTACTAAGATTGTAAAGGATGCATTCTCTGCTCAGAAGGAG

. : . : . : . : . : . :
JMFF040A08+ CTTCTAATCAAAACCAAGGGAATTCAGAAACCTGACATGAAGGGTCTCAGTGAGTTCTTG
JMFF005P10+ CTTCTAATCAAAACCAAG
JMFF023L03+ CTTCTAATCAAAACCAAGGGAATTCAGAAACCTGACATGAAGGGTCTCAGTGAGTTCTTG
JMFF014N20+ CTTCTAATCAAAACCAAGGGAATTCAGAAACCTGACATGAAGGGTCTCAGTGAGTTCTTG
JMFF033D21+ CTTCTAATCAAAACCAAGGGAATTCAGAAACCTGACATGAAGGGTCTCAGTGAGTTCTTG
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consensus CTTCTAATCAAAACCAAGGGAATTCAGAAACCTGACATGAAGGGTCTCAGTGAGTTCTTG

. : . : . : . : . : . :
JMFF040A08+ AAGCCTTTGAATGAAGTAATTATGAGGGGATCATCGTTGACAGAAGGGCGGAGATCTGAT
JMFF023L03+ AAGCCTTTGAATGAAGTAATTATGAGGGGATCATCGTTGACAGAAGGGCGGAGATCTGAT
JMFF014N20+ AAGCCTTTGAATGAAGTAATTATGAGGGGATCATCGTTGACAGAAGGGCGGAGATCTGAT
JMFF033D21+ AAGCCTTTGAATGAAGTAATTATGAGGGGATCATCGTTGACAGAAGGGCGGAGATCTGAT
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consensus AAGCCTTTGAATGAAGTAATTATGAGGGGATCATCGTTGACAGAAGGGCGGAGATCTGAT

. : . : . : . : . : . :
JMFF040A08+ TTCTTCAACCATTTAAAGGCTGCCACTGATAGTTTAACGGCTCTGGCATGGATTGCCTAC
JMFF023L03+ TTCTTCAACCATTTAAAGGCTGCCACTGATAGTTTAACGGCTCTGGCATGG
JMFF014N20+ TTCTTCAACCATTTAAAGGCTGCCACTGATAGTTTAACGGCTCTGGCATGG
JMFF033D21+ TTCTTCAACCATTTAAAGGCTGCCACTGATAGTTTAACGGCTCTGGCATGGATTGCCTAC
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consensus TTCTTCAACCATTTAAAGGCTGCCACTGATAGTTTAACGGCTCTGGCATGGATTGCCTAC

. : . : . : . : . : . :
JMFF040A08+ ACAGGAAAAGATTGCGGTATGAGCATGCCCATAGCCCATGTTGAAGAAAGCTGGCAGATG
JMFF033D21+ ACAGGAAAAGATTGCGGTATGAGCATGCCCATAGCCCATGTTGAAGAAAGCTGGCAGATG
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consensus ACAGGAAAAGATTGCGGTATGAGCATGCCCATAGCCCATGTTGAAGAAAGCTGGCAGATG

. : . : . : . : . : . :
JMFF040A08+ GCTGAGTT
JMFF033D21+ GCTGAGTTTTACAAT
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consensus GCTGAGTTTTACAAT