Alignment Contig 1727

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF034N12+ ATCAAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
JMFF050M22+ ATCAAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
JMFF009H15+ AAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
JMFF020D04+ ATCAAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
JMFF023J06+ AAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
JMFF023B04+ ATCAAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
JMFF006A17+ CAAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
JMFF042J15+ AAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA
____________________________________________________________
consensus ATCAAAGAAAGATAGCAGAGTACACTCAATTGCAGAGAGGGAGAGAGAGAGAGAGAAGTA

. : . : . : . : . : . :
JMFF034N12+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF050M22+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF009H15+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF020D04+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF023J06+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF023B04+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF006A17+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF042J15+ TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG
JMFF003J15+ GCTGAGTGAATTG
JMFF027L13+ GCTGAGTGAATTG
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consensus TTGAAGAGGAGCCAAGTAGCCAACCACCGTTCTTGGTGGTCTGAAAAGCTGAGTGAATTG

. : . : . : . : . : . :
JMFF034N12+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF050M22+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF009H15+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF020D04+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF023J06+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF023B04+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF006A17+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF042J15+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF003J15+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
JMFF027L13+ ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA
____________________________________________________________
consensus ATTCAGTTCTGGTGAAGGGTTCTTGAGCTTTGCATTTCTCATTAGGAAGGGCACAGAACA

. : . : . : . : . : . :
JMFF034N12+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF050M22+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF009H15+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF020D04+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF023J06+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF023B04+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF006A17+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF042J15+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF003J15+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
JMFF027L13+ ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT
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consensus ATCATCTCAGTTTCATCTTTGGTTTTCAAGAAGGAAAATGGTGACAAGGACTGTGGATCT

. : . : . : . : . : . :
JMFF034N12+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF050M22+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF009H15+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATTCGGGCTGCAATGGCAAGTGCTGA
JMFF020D04+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF023J06+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF023B04+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF006A17+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF042J15+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF003J15+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
JMFF027L13+ CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA
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consensus CCGCTCTGACACAGTTACTAAACCAACAGAAGCCATGCGGGCTGCAATGGCAAGTGCTGA

. : . : . : . : . : . :
JMFF034N12+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGACTTGAAGCAGAAATCGC
JMFF050M22+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF009H15+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF020D04+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF023J06+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF023B04+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF006A17+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF042J15+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF003J15+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
JMFF027L13+ AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC
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consensus AGTAGATGATGACGTGTTGGGTTTTGACCCAACAGCCCAACGCCTTGAAGCAGAAATCGC

. : . : . : . : . : . :
JMFF034N12+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF050M22+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF009H15+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF020D04+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF023J06+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCANGCACGATGGGTAACCTGAT
JMFF023B04+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF006A17+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF042J15+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF003J15+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
JMFF027L13+ AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT
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consensus AAAGATCATGGGCAAAGAAGCTGGTCTTTTTGTTCCTTCAGGCACGATGGGTAACCTGAT

. : . : . : . : . : . :
JMFF034N12+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA
JMFF050M22+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA
JMFF009H15+ TAGCGTTCTTACTCATTG
JMFF020D04+ TAGCGTTCTTACTCA
JMFF023J06+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATC
JMFF023B04+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA
JMFF006A17+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA
JMFF042J15+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA
JMFF003J15+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA
JMFF027L13+ TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA
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consensus TAGCGTTCTTACTCATTGTCCAATTAGGGGAAGTGAAATCATCCTTGGTGATTATTCGCA

. : . : . : . : . : . :
JMFF034N12+ TATCCACATTTATGAAAACGGAGGTATTTCCAC
JMFF050M22+ TATCCACATTTATGANAACGGAGGTATTTCCACCATTGGAGGTGTTCATCCGAGGACNAT
JMFF023B04+ TATCCACATTTATGAA
JMFF006A17+ TATCCACATTTATGAAAACGGAGGTATTTCCA
JMFF042J15+ TATCCACATTTATGAAAACGGAGGTATTTCCACCATTGGAGGTGTTCATCCGAGGACAAT
JMFF003J15+ TATCCACATTTATGAAAACGGAGGTATTTCCACCATTGGAGGTGTTCATCCGAGGACAAT
JMFF027L13+ TATCCACATTTATGAAAACGGAGGTATTTCCACCATTGGAGGTGTTCATCCGAGGACAAT
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consensus TATCCACATTTATGAAAACGGAGGTATTTCCACCATTGGAGGTGTTCATCCGAGGACAAT

. : . : . : . : . : . :
JMFF050M22+ CAAGAACAACGATGATGGAACCATGGATCTTGATCAGATTGAAGCT
JMFF042J15+ CAAGAACAACGATGATGGAACCATGGATCTTGATCAGATTGAAGCTGCAATCCGAGATCC
JMFF003J15+ CAAGAACAACGATGATGGAACCATGGATCTTGATCAGATTGAAGCTGCAATCCGAGATCC
JMFF027L13+ CAAGAACAACGATGATGGAACCATGGATCTTGATCAGATTGAAGCTGCAATCCGAGATCC
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consensus CAAGAACAACGATGATGGAACCATGGATCTTGATCAGATTGAAGCTGCAATCCGAGATCC

. : . : . : . : . : . :
JMFF042J15+ TAGATTTGAGATATGTTTCCCAACCACTAGACTCATCTGCTTG
JMFF003J15+ TAGATTTGAGATATGTTTCCCAACCACTAGACTCATCTGCTTGGAAAATTCAAATGCACA
JMFF027L13+ TAGATTTGAGATATGTTTCCCAACCACTAGACTCATCTGCTTGGAAAATTCAAATGCACA
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consensus TAGATTTGAGATATGTTTCCCAACCACTAGACTCATCTGCTTGGAAAATTCAAATGCACA

. : . : . : . : . : . :
JMFF003J15+ CTCTGGTGG
JMFF027L13+ CTCTGGTGGTAGATGCCTCTCAG
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consensus CTCTGGTGGTAGATGCCTCTCAG