Alignment Contig 1695

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF026M01+ ACCTCTCGATCGAAACCCTAAACCCCACTCCTGCAAGTGAAGTGGCCTACGGCGGTTTCT
JMFF037H10+ CTCTCGATCGAAACCCTAAACCCCACTCCTGCAAGTGAAGTGGCCTACGGCGGTTTCT
JMSF027B22+ CGGCGGTTTCT
JMFF007C11+ CTCTTGATCGAAACCCTAAACCCCACTCCTGCAAGTGAAGTGGCCTACGGCGGTTTCT
JMFF018E11+ CTCTCGATCGAAACCCTAAACCCCACTCCTGCAAGTGAAGTGGCCTACGGCGGTTTCT
JMFF013M17+ CTCGATCGAAACCCTAAACCCCACTCCTGCAAGTGAAGTGGCCTACGGCGGTTTCT
JMSF026B22+ CGGCGGTTTCT
____________________________________________________________
consensus ACCTCTCGATCGAAACCCTAAACCCCACTCCTGCAAGTGAAGTGGCCTACGGCGGTTTCT

. : . : . : . : . : . :
JMFF026M01+ CAGAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT
JMFF037H10+ CAGAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT
JMSF027B22+ CANAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT
JMFF007C11+ CAGAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT
JMFF018E11+ CAGAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT
JMFF013M17+ CAGAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT
JMSF026B22+ CAGAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT
____________________________________________________________
consensus CAGAACAAGTAGCTGTGGTGGGAAAATTGTGTTGGAAGTTTCTAATCTGAAGCCATGGCT

. : . : . : . : . : . :
JMFF026M01+ CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCAAGGCACTCATTGTTGCGGAA
JMFF037H10+ CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCAAGGCACTCATTGTTGCGGAA
JMSF027B22+ CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCNAGGCACTCATTGTTGCGGAA
JMFF007C11+ CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCAAGGCACTCACTGTTGCGGAA
JMFF018E11+ CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCAAGGCACTCATTGTTGCGGAA
JMFF013M17+ CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCAAGGCACTCATTGTTGCGGAA
JMSF026B22+ CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCAAGGCACTCATTGTTGCGGAA
____________________________________________________________
consensus CTGGTTCTGCATTCTCCCAATGAAAACAAAAACGCATTCAAGGCACTCATTGTTGCGGAA

. : . : . : . : . : . :
JMFF026M01+ TACTGTGGTGTGAAAGTTGAGCTTACGAAGAACTTTCAGATGGGTGTGTCAAACAAGACT
JMFF037H10+ TACTGTGGTGTGAAAGTTGAGCTTACGAAGAACTTTCAGATGGGTGTGTCAAACAAGACT
JMSF027B22+ TACTGTGGTGTGAAAGTTGAGCTTACGAANAACTTTCAGATGGGTGTGTCAAACAAGACT
JMFF007C11+ TACTGTGGTGTGAAAGTTGAGCTTACGAAGAACTTTCAGATGGGTGTGTCAAACAAGACT
JMFF018E11+ TACTGTGGTGTGAAAGTTGAGCTTACGAAGAACTTTCAGATGGGTGTGTCAAACAAGACT
JMFF013M17+ TACTGTGGTGTGAAAGTTGAGCTTACGAAGAACTTTCAGATGGGTGTGTCAAACAAGACT
JMSF026B22+ TACTGTGGTGTGAAAGTTGAGCTTACGAAGAACTTTCAGATGGGTGTGTCAAACAAGACT
____________________________________________________________
consensus TACTGTGGTGTGAAAGTTGAGCTTACGAAGAACTTTCAGATGGGTGTGTCAAACAAGACT

. : . : . : . : . : . :
JMFF026M01+ CCCGAGTTTCTTAAGATGAACCCAATTGGAAAGGTTCCTGTGCTTGAAACACCCGATGGT
JMFF037H10+ CCCGAGTTTCTTAAGATGAACCCAATTGGAAAGGTTCCTGTGCTTGAAACACCCGATGGT
JMSF027B22+ CCCGAGTTTCTTAAGATGAACCCAATTGGAAAGGTTCCTGTGCTTGAAACACCCGATGGT
JMFF007C11+ CCCGAGTTTCTTAAGATGAACCCAATTGGTAAGGTTCCTGTGCTTGAAACACCCGATGGT
JMFF018E11+ CCCGAGTTTCTTAAGATGAACCCAATTGGAAAGGTTCCTGTGCTTGAAACACCCGATGGT
JMFF013M17+ CCCGAGTTTCTTAAGATGAACCCAATTGGAAAGGTTCCTGTGCTTGAAACACCCGATGGT
JMSF026B22+ CCCGAGTTTCTTAAGATGAACCCAATTGGAAAGGTTCCTGTGCTTGAAACACCCGATGGT
____________________________________________________________
consensus CCCGAGTTTCTTAAGATGAACCCAATTGGAAAGGTTCCTGTGCTTGAAACACCCGATGGT

. : . : . : . : . : . :
JMFF026M01+ CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA
JMFF037H10+ CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA
JMSF027B22+ CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA
JMFF007C11+ CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA
JMFF018E11+ CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA
JMFF013M17+ CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA
JMSF026B22+ CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA
____________________________________________________________
consensus CCTATATTTGAGAGCAATGCCATTGCACGCTATGTTGCTAAGGTGAAGCCTGACAATCCA

. : . : . : . : . : . :
JMFF026M01+ CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT
JMFF037H10+ CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT
JMSF027B22+ CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT
JMFF007C11+ CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT
JMFF018E11+ CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT
JMFF013M17+ CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT
JMSF026B22+ CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT
____________________________________________________________
consensus CTTTTTGGCTCTTCATTAATTGAATATGGCCACATTGAACAATGGACTGACTTTGCTGCT

. : . : . : . : . : . :
JMFF026M01+ ACAGAGATTGATGCTAATACCGCAAAATGGTTGTACCCACGCCTTGGATTTGTGATATAT
JMFF037H10+ ACAGAGATTGATG
JMSF027B22+ ACAGAGATTGATGCTAATACCGCAAAATGGTTGTACCCACGCCTTGGATTTGTGATATAT
JMFF007C11+ ACAGAGATTGATGCTAATACCGCAAAATGGTTGTACCCACGCCTTGGATTTGTGATATAT
JMFF018E11+ ACAGAGATTGATGCTAATACCGCAAAATGGTTGTACCCACGCCTTGGATTTGTGATATAT
JMFF013M17+ ACAGAGATTGATGCTAATACCGCAAAATGGTTGTACCCACGCCTTGGATTTGTGATATAT
JMSF026B22+ ACAGAGATTGATGCTAATACCGCAAAATGGTTGTACCCACGCCTTGGATTTGTGATATAT
____________________________________________________________
consensus ACAGAGATTGATGCTAATACCGCAAAATGGTTGTACCCACGCCTTGGATTTGTGATATAT

. : . : . : . : . : . :
JMFF026M01+ TTGCCTCCGGCTGAGGAAGCTGCAATTGCTTCGCTGAAGAGATCGCTTACTGCTTTGAAC
JMSF027B22+ TTGCCTCCGGCTG
JMFF007C11+ TTGCCTCCGGCTGAGGAAGCTGCAATTGCTTCGCTGAAGAGATCGCTTACTGCTTTGAAC
JMFF018E11+ TTGCCTCCGGCTGAGGAAGCTGCAATTGCTTCGCTGAAGAGATCGCTTACTGCTTTGAAC
JMFF013M17+ TTGCCTCCGGCTGAGGAAGCTGCAATTGCTTCGCTGAAGAGATCGCTTACTGCTTTGAAC
JMSF026B22+ TTGCCTCCGGCTGAGGAAGCTGCAATTGCTTCGCTGAAGAGATCGCTTACTGCTTTGAAC
____________________________________________________________
consensus TTGCCTCCGGCTGAGGAAGCTGCAATTGCTTCGCTGAAGAGATCGCTTACTGCTTTGAAC

. : . : . : . : . : . :
JMFF026M01+ ACCCATCTTGCCTCTAACACTTACTTGGNTGGGCATTCTGTCACACTAGCC
JMFF007C11+ ACCCATCTTGCCTCTAACACTTACTTGGTTGGGCATTCTGTCACACTAGCC
JMFF018E11+ ACCCATCTTGCCTCTAACACTTACTTGGTTGGGCATTCTGTCA
JMFF013M17+ ACCCATCTTGCCTCTAACACTTACTTGGTTGGGCATTCTGTCACACTAGC
JMSF026B22+ ACCCATCTTGCCTCTAACACTTACTTGGTTGGGCATTCTGTCACACTAGCCGACATTGTT
____________________________________________________________
consensus ACCCATCTTGCCTCTAACACTTACTTGGTTGGGCATTCTGTCACACTAGCCGACATTGTT

. : . : . : . : . : . :
JMSF026B22+ ATGATCTGCAACTTGAGCATTGGATTTAAGTGGATCATGACTAAGAGCTTCACCAAGGAA
____________________________________________________________
consensus ATGATCTGCAACTTGAGCATTGGATTTAAGTGGATCATGACTAAGAGCTTCACCAAGGAA

. : . : . : . : . : . :
JMSF026B22+ TTCCCACATGTTGAGAGATATTTCTGGACATTG
____________________________________________________________
consensus TTCCCACATGTTGAGAGATATTTCTGGACATTG