Alignment Contig 1687

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF025A12+ ATCGCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFF044D01+ GCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMSF029B20+ GCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFF023G16+ GCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFF020H23+ CAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFF030E18+ TTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFF017K06+ GCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFF046J13+ GCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMSF021A24+ GCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFN011B21+ AGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFN040M10+ CAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFN016O07+ CAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG
JMFN035A02+ AACCATGTCTTACTACCCG
____________________________________________________________
consensus ATCGCTTATCCAAAGCAAGCAGCTCCAGAAGAACCAAAATCAACCATGTCTTACTACCCG

. : . : . : . : . : . :
JMFF025A12+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFF044D01+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMSF029B20+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFF023G16+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFF020H23+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFF030E18+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFF017K06+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFF046J13+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMSF021A24+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFN011B21+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFN040M10+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFN016O07+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
JMFN035A02+ AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT
____________________________________________________________
consensus AAAGGCCACCACGCCGGCGACGATGACGTCGACGACTTCGATGAGTTCGATCCAACTCCT

. : . : . : . : . : . :
JMFF025A12+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFF044D01+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMSF029B20+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFF023G16+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFF020H23+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFF030E18+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFF017K06+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFF046J13+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMSF021A24+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFN011B21+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFN040M10+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFN016O07+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
JMFN035A02+ TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG
____________________________________________________________
consensus TACGACGGTGGATACGACATTACTGTGACGTACGGCCGTCCCATTTCGCCATCGGAGGAG

. : . : . : . : . : . :
JMFF025A12+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFF044D01+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMSF029B20+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFF023G16+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFF020H23+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFF030E18+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFF017K06+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFF046J13+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMSF021A24+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFN011B21+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFN040M10+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFN016O07+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
JMFN035A02+ ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC
____________________________________________________________
consensus ACCTGCTATCCCATCTCCTCCGCCTCCGGCGACTTTGACTATGATCGTCCCCAATACACC

. : . : . : . : . : . :
JMFF025A12+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAA
JMFF044D01+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMSF029B20+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFF023G16+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFF020H23+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFF030E18+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFF017K06+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFF046J13+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMSF021A24+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFN011B21+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFN040M10+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFN016O07+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
JMFN035A02+ TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT
____________________________________________________________
consensus TCCCATGCTGAGCCATCTGCCTATGCCGACGAGGCTCTTGACAACGAGTACAAGAGCTAT

. : . : . : . : . : . :
JMFF044D01+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMSF029B20+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFF023G16+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFF020H23+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFF030E18+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFF017K06+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFF046J13+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMSF021A24+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFN011B21+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFN040M10+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFN016O07+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
JMFN035A02+ GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT
____________________________________________________________
consensus GCCAAACCCAAGCCTCGACCCGGCCCTTCCTATGGGGGCTCATCCGAGGCGGGTTATAAT

. : . : . : . : . : . :
JMFF044D01+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMSF029B20+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFF023G16+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFF020H23+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFF030E18+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFF017K06+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFF046J13+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMSF021A24+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFN011B21+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFN040M10+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFN016O07+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
JMFN035A02+ CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA
____________________________________________________________
consensus CGTCGCCCCGGTGGAGGAGGAGGCTATGGTGGTGAATCCGAGTACGGATCTGAAGGTGGA

. : . : . : . : . : . :
JMFF044D01+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMSF029B20+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFF023G16+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFF020H23+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFF030E18+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFF017K06+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFF046J13+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMSF021A24+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFN011B21+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFN040M10+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFN016O07+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
JMFN035A02+ TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA
____________________________________________________________
consensus TATGGTCGTAGACCAGAGCAACAGAGGCCCAGTTCTGAATATGGATCGGGGTATGAGAGA

. : . : . : . : . : . :
JMFF044D01+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMSF029B20+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATAT
JMFF023G16+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFF020H23+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFF030E18+ CCCGATTCTGAATATGGGTCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFF017K06+ CCCGATTCTAAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFF046J13+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMSF021A24+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFN011B21+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFN040M10+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFN016O07+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
JMFN035A02+ CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA
____________________________________________________________
consensus CCCGATTCTGAATATGGATCGGGGCATGGCCGTAAGCCGAGTTCTGAATATGGATCCGGA

. : . : . : . : . : . :
JMFF044D01+ TATGGACGCAGGAACGAAGACGANAGGCCCGATTCCGAGTACGGATCTGGCAATAGGCGG
JMFF023G16+ TATG
JMFF020H23+ TATGGACGCAGGA
JMFF030E18+ TATGGACGCAGG
JMFF017K06+ TATGGACGCAGG
JMFF046J13+ TATGGACGCA
JMSF021A24+ TATGGACGCAGGAACGAAGACGAAAGGCCCGATTCCGAGTACGGATCTGGCAATAGGCGG
JMFN011B21+ TATGGACGCAGGAACGAAGACGAAAGGCCCGATTCCGAGTACGGATCTGGCAATAGGCGG
JMFN040M10+ TATGGACGCAGGAACGAAGACGAAAGGCCCGATTCCGAGTACGGATCTGGCAATAGGCGG
JMFN016O07+ TATGGACGCAGGAACGAAGACGAAAGGCCCGATTCCGAGTACGGATCTGGCAATAGGCGG
JMFN035A02+ TATGGACGCAGGAACGAAGACGAAAGGCCCGATTCCGAGTACGGATCTGGCAATAGGCGG
____________________________________________________________
consensus TATGGACGCAGGAACGAAGACGAAAGGCCCGATTCCGAGTACGGATCTGGCAATAGGCGG

. : . : . : . : . : . :
JMFF044D01+ AAACCTTCATACGAAGAGGGAGGATCCGAATACGGATCTGGATATGG
JMSF021A24+ AAACCTTCATACGAAGAG
JMFN011B21+ AAACCTTCATACGAAGAGGGAGGATCCGAATACG
JMFN040M10+ AAACCTTCATACGAAGAGGGAGGATCCGAATACGGATCTGGATATGGGCGTCGTAACGAA
JMFN016O07+ AAACCTTCATACGAAGAGGGAGGATCCGAATACGGATCTGGATATGGGCGTCGTAACGAA
JMFN035A02+ AAACCTTCATACGAAGAGGGAGGATCCGAATACGGATCTGGATATGGGCGTCGTAACGAA
____________________________________________________________
consensus AAACCTTCATACGAAGAGGGAGGATCCGAATACGGATCTGGATATGGGCGTCGTAACGAA

. : . : . : . : . : . :
JMFN040M10+ T
JMFN016O07+ T
JMFN035A02+ TCCGAATCCG
____________________________________________________________
consensus TCCGAATCCG