Alignment Contig 1609

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF012C04+ GATATTCTCATTTCTCATCACTTCTCTCACTATCTTTATTAGACCATCGGTTTTTCTTTC
JMFF039L08+ GATATTCTCATTTCTCATCACTTCTCTCACTATCTTTATTAGACCATCGGTTTTTCTTTC
JMFF050E24+ GATATTCTCATTTCTCATCACTTCTCTCACTATCTTTATTAGACCATCGGTTTTTCTTTC
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consensus GATATTCTCATTTCTCATCACTTCTCTCACTATCTTTATTAGACCATCGGTTTTTCTTTC

. : . : . : . : . : . :
JMFF012C04+ CATGTTCTCATCTAATAATAGACTTCTCTGAAATTCCGGGAATCTTTTCTTTCTGCCACC
JMFF039L08+ CATGTTCTCATCTAATAATAGACTTCTCTGAAATTCCGGGAATCTTTTCTTTCTGCCACC
JMFF050E24+ CATGTTCTCATCTAATAATAGACTTCTCTGAAATTCCGGGAATCTTTTCTTTCTGCCACC
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consensus CATGTTCTCATCTAATAATAGACTTCTCTGAAATTCCGGGAATCTTTTCTTTCTGCCACC

. : . : . : . : . : . :
JMFF012C04+ GCCCATACTCCTCCCAATCCCATCACCCACCCGTGATCTTCAAAATTCCTTTGCTTTTTC
JMFF039L08+ GCCCATACTCCTCCCAATCCCATCACCCACCCGTGATCTTCAAAATTCCTTTGCTTTTTC
JMFF050E24+ GCCCATACTCCTCCCAATCCCATCACCCACCCGTGATCTTCAAAATTCCTTTGCTTTTTC
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consensus GCCCATACTCCTCCCAATCCCATCACCCACCCGTGATCTTCAAAATTCCTTTGCTTTTTC

. : . : . : . : . : . :
JMFF012C04+ TCAAGTCTCTGTGGAAAGCAGCTGCAAATACCATTCTTTTCCCTTCTGATCGTGGAATCC
JMSF010A14+ GGAAAGCAGCTGCAAATACCATTCTTTTCCCTTCTGATCGTGGAATCC
JMFF039L08+ TCAAGTCTCTGTGGAAAGCAGCTGCAAATACCATTCTTTTCCCTTCTGATCGTGGAATCC
JMFF050E24+ TCAAGTCTCTGTGGAAAGCAGCTGCAAATACCATTCTTTTCCCTTCTGATCGTGGAATCC
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consensus TCAAGTCTCTGTGGAAAGCAGCTGCAAATACCATTCTTTTCCCTTCTGATCGTGGAATCC

. : . : . : . : . : . :
JMFF012C04+ GCTGTAAACCCAAATCTCTCCTTTGCCGACTTCCGGATGTTCTGTTGATTCCCCCTGATT
JMSF010A14+ GCTGTAAACCCAAATCTCTCCTTTGCCGACTTCCGGATGTTCTGTTGATTCCCCCTGATT
JMFF039L08+ GCTGTAAACCCAAATCTCTCCTTTGCCGACTTCCGGATGTTCTGTTGATTCCCCCTGATT
JMFF050E24+ GCTGTAAACCCAAATCTCTCCTTTGCCGACTTCCGGATGTTCTGTTGATTCCCCCTGATT
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consensus GCTGTAAACCCAAATCTCTCCTTTGCCGACTTCCGGATGTTCTGTTGATTCCCCCTGATT

. : . : . : . : . : . :
JMFF012C04+ CAGCTATAAATTGGTGAAATTCTGTTTTGCTTAGTTGTGGTTTTTCGAATTCGAGCTTCT
JMSF010A14+ CAGCTATAAATTGGTGAAATTCTGTTTTGCTTAGTTGTGGTTTTTCGAATTCGAGCTTCT
JMFF039L08+ CAGCTATAAATTGGTGAAATTCTGTTTTGCTTAGTTGTGGTTTTTCGAATTCGAGCTTCT
JMFF050E24+ CAGCTATAAATTGGTGAAATTCTGTTTTGCTTAGTTGTGGTTTTTCGAATTCGAGCTTCT
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consensus CAGCTATAAATTGGTGAAATTCTGTTTTGCTTAGTTGTGGTTTTTCGAATTCGAGCTTCT

. : . : . : . : . : . :
JMFF012C04+ GGGTGGAAAATTATTCTTGTTTCCAGTTTAAGTAGTGCTTAAAGGTTGAAACTTTAGCAG
JMSF010A14+ GGGTGGAAAATTATTCTTGTTTCCAGTTTAAGTAGTGCTTAAAGGTTGAAACTTTAG
JMFF039L08+ GGGTGGAAAATTATTCTTGTTTCCAGTTTAAGTAGTGCTTAAAGGTTGAAACTTTAGCAG
JMFF050E24+ GGGTGGAAAATTATTCTTGTTTCCAGTTTAAGTAGTGCTTAAAGGTTGAAACTTTAGCAG
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consensus GGGTGGAAAATTATTCTTGTTTCCAGTTTAAGTAGTGCTTAAAGGTTGAAACTTTAGCAG

. : . : . : . : . : . :
JMFF012C04+ ATTTAAATTGCAGTTCGTTGTAGTTGAGCTAAAAGGTGCGAAATTAGAAGGAAAAAATGG
JMFF039L08+ ATTTAAATTGCAGTTCGTTGTAGTTGAGCTAAAAGGTGCGAAATTAGAAGGAAAAAATGG
JMFF050E24+ ATTTAAATTGCAGTTCGTTGTAGTTGAGCTAAAAGGTGCGAAATTAGAAGGAAAAAATGG
JMFS119C06+ AAATGG
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consensus ATTTAAATTGCAGTTCGTTGTAGTTGAGCTAAAAGGTGCGAAATTAGAAGGAAAAAATGG

. : . : . : . : . : . :
JMFF012C04+ AGAAATATGAGCTTGTTAAGGATATTGGGTCTGGTAATTTCGGTGTGGCCAGGCTTATGA
JMFF039L08+ AGAAATATGGGCTTGTTAAGGATATTGGGTCTGGTAATTTCGGTGTGGCCAGGCTTATGA
JMFF050E24+ AGAAATATGGGCTTGTTAAGGATATTGGGTCTGGTAATTTCGGTGTGGCCAGGCTTATGA
JMFS119C06+ AGAAATACGAGCTTGTTAAGGATATAGGTTCCGGGAATTTCGGCGTGGCGAGGCTCATGA
JMFF028B09+ AGGCTTATGA
JMFF012I21+ AGGCTTATGA
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consensus AGAAATATGAGCTTGTTAAGGATATTGGGTCTGGTAATTTCGGTGTGGCCAGGCTTATGA

. : . : . : . : . : . :
JMFF050E24+ GGAACAAGGAGACNAAGGAGCTTGTGGCCATGAAGTACATCGAGAGAGGACTTAAGATTG
JMFS119C06+ GGAACAAGGAGACGAAGGAGCTCGTGGCCATGAAGTACATAGAAAGAGGCTTTAAGATTG
JMFF028B09+ GGAACAAGGAGACAAAGGAGCTTGTGGCCATGAAGTACATCGAGAGAGGACTTAAGATTG
JMFF012I21+ GGAACAAGGAGACAAAGGAGCTTGTGGCCATGAAGTACATCGAGAGAGGACTTAAGATTG
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consensus GGAACAAGGAGACAAAGGAGCTTGTGGCCATGAAGTACATCGAGAGAGGACTTAAGATTG

. : . : . : . : . : . :
JMFF050E24+ ATGAGAATGTGGCACGGGAGATCATAA
JMFS119C06+ ATGAGAATGTGGCCAGGGAGATCATAAACCATAGATCACTGCGACACCCAAACATAATTC
JMFF028B09+ ATGAGAATGTGGCACGGGAGATCATAAACCACAGATCACTTCGTCACCCGAACATCATTC
JMFF012I21+ ATGAGAATGTGGCACGGGAGATCATAAACCACAGATCACTTCGTCACCCGAACATCATTC
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consensus ATGAGAATGTGGCACGGGAGATCATAAACCACAGATCACTTCGTCACCCGAACATCATTC

. : . : . : . : . : . :
JMFS119C06+ GGTTCAAGGAGGTCATATTGACTCCTACTCATCTTGCCATTGTCATGGAATATGCAGCAG
JMFF028B09+ GGTTCAAGGAGGTGGTTCTGACTCCCACTCATCTTGCCATTGTAATGGAATATGCAGCAG
JMFF012I21+ GGTTCAAGGAGGTGGTTCTGACTCCCACTCATCTTGCCATTGTAATGGAATATGCAGCAG
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consensus GGTTCAAGGAGGTGGTTCTGACTCCCACTCATCTTGCCATTGTAATGGAATATGCAGCAG

. : . : . : . : . : . :
JMFS119C06+ GTGGAGAGCTTTTTGATCGAATCTGCAATGCGGGAAGGTTCAGTGAAGACGAGGCTAGGT
JMFF028B09+ GTGGAGAGCTCTTTGAACGCATCTGCAATGTGGGAAGATTCAGTGAGGATGAGGCTAGGT
JMFF012I21+ GTGGAGAGCTCTTTGAACGCATCTGCAATGTGGGAAGATTCAGTGAGGATGAGGCTAGGT
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consensus GTGGAGAGCTCTTTGAACGCATCTGCAATGTGGGAAGATTCAGTGAGGATGAGGCTAGGT

. : . : . : . : . : . :
JMFS119C06+ ACAGCTTCCAGCAGCTTATTTCAGGAGTCAGCTACTGTCACTCTTTGCAAATATGTCATC
JMFF028B09+ ACTTCTTCCAGCAGCTTATTTCTGGAGTCAGCTACTGTCACTCTTTGCAAATATGTCATA
JMFF012I21+ ACTTCTTCCAGCAGCTTATTTCTGGAGTCAGCTACTGTCACTCTTTGCAAATATGTCATA
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consensus ACTTCTTCCAGCAGCTTATTTCTGGAGTCAGCTACTGTCACTCTTTGCAAATATGTCATA

. : . : . : . : . : . :
JMFS119C06+ GAGACCTAAAGCTGGAGAATACCCTACTGGATGGGAGTGCCGCACCACGTCTTAAGATTT
JMFF028B09+ GAGATCTGAAGCTGGAGAATACCCTCTTGGATGGAAGCCCGGCGCCTCGCCTGAAGATTT
JMFF012I21+ GAGATCTGAAGCTGGAGAATACCCTCTTGGATGGAAGCCCGGCGCCTCGCCTGAAGATTT
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consensus GAGATCTGAAGCTGGAGAATACCCTCTTGGATGGAAGCCCGGCGCCTCGCCTGAAGATTT

. : . : . : . : . : . :
JMFS119C06+ GTGATTTTGGCTACTC
JMFF028B09+ GTGATTTTGGCTACTCAAAGGTATGTATATTACGTGGTAACATTTGATAGAAGAGTTGGC
JMFF012I21+ GTGATTTTGGCTACTCAAAGGTATGTATATTACGTGGTAACATTTGATAGAAGAGTTGGC
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consensus GTGATTTTGGCTACTCAAAGGTATGTATATTACGTGGTAACATTTGATAGAAGAGTTGGC

. : . : . : . : . : . :
JMFF028B09+ TGCTCATTTTTCTCTACCCCTGTACCTAGTCATCTCTGCTGCATTCAAGACCAAAATCGA
JMFF012I21+ TGCTCATTTTTCTCTACCCCTGTACCTAGTCATCTCTGCTGCATTCAAGACCAAAATCGA
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consensus TGCTCATTTTTCTCTACCCCTGTACCTAGTCATCTCTGCTGCATTCAAGACCAAAATCGA

. : . : . : . : . : . :
JMFF028B09+ CTGTTGGCACTCCAGCTTATATTGCTCCAGAGGTTCTATCTCGGAGAGAGTATGACGGC
JMFF012I21+ CTGTTGGCACTCCAGCTTATATTGCTCCAGAGGTTCTATCTC
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consensus CTGTTGGCACTCCAGCTTATATTGCTCCAGAGGTTCTATCTCGGAGAGAGTATGACGGC