Alignment Contig 1558

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF003H14+ ATCTTCAAATTCCAAATGGCCACCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG
JMFF025B08+ ATCTTCAAATTCCAAATGGCCACCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG
JMFF020F16+ ATCTTCAAATTCCAAATGGCCACCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG
JMFF032L23+ ATCTTCAAATTCCAAATGGCCACCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG
JMFF016O02+ ATCTTCAAATTCCAAATGGCCACCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG
JMFF038P16+ ATCTTCAAATTCCAAATGGCCACCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG
JMFS043C05+ CCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG
____________________________________________________________
consensus ATCTTCAAATTCCAAATGGCCACCGGCTCTTCTTCTTACAAACCCCCTTACACTCCCCTG

. : . : . : . : . : . :
JMFF003H14+ TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC
JMFF025B08+ TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC
JMFF020F16+ TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC
JMFF032L23+ TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC
JMFF016O02+ TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC
JMFF038P16+ TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC
JMFS043C05+ TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC
____________________________________________________________
consensus TCGGATCGAACCGAGTCCGCCGGAGCTCCGGAGAATCTCCGGCGATCCTTAAAGTTCTTC

. : . : . : . : . : . :
JMFF003H14+ ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT
JMFF025B08+ ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT
JMFF020F16+ ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT
JMFF032L23+ ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT
JMFF016O02+ ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT
JMFF038P16+ ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT
JMFS043C05+ ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT
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consensus ACCTGCACTCTCATCTCCTTACTCTGTGTAGTCTTATCCGTCCTTGTAGTCCTCAATCAT

. : . : . : . : . : . :
JMFF003H14+ TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC
JMFF025B08+ TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC
JMFF020F16+ TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC
JMFF032L23+ TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC
JMFF016O02+ TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC
JMFF038P16+ TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC
JMFS043C05+ TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC
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consensus TCATCAGAACTGGTCAAAGATGAAACTTCACAACAACCGTCTCCGTCGCTAAAGGCCGCC

. : . : . : . : . : . :
JMFF003H14+ GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT
JMFF025B08+ GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT
JMFF020F16+ GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT
JMFF032L23+ GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT
JMFF016O02+ GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT
JMFF038P16+ GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT
JMFS043C05+ GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT
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consensus GGAGATGTTATCCCGTCGGTGGAGGAAGCCGCCGGCGATGGGGTTCCATATTCTTGGACT

. : . : . : . : . : . :
JMFF003H14+ AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG
JMFF025B08+ AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG
JMFF020F16+ AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG
JMFF032L23+ AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG
JMFF016O02+ AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG
JMFF038P16+ AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG
JMFS043C05+ AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG
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consensus AATCGGATGCTGTCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCCAAAGAGCTGGATG

. : . : . : . : . : . :
JMFF003H14+ AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC
JMFF025B08+ AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC
JMFF020F16+ AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC
JMFF032L23+ AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC
JMFF016O02+ AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC
JMFF038P16+ AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC
JMFS043C05+ AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC
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consensus AATGATCCTAATGGTCCACTATACCACAAAGGATGGTACCACCTTTTTTACCAATACAAC

. : . : . : . : . : . :
JMFF003H14+ CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG
JMFF025B08+ CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG
JMFF020F16+ CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG
JMFF032L23+ CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG
JMFF016O02+ CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG
JMFF038P16+ CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG
JMFS043C05+ CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG
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consensus CCTAGTTCAGCTGTTTGGGTGGAGAACATCACCTGGGGTCACGCAGTATCAAGGGACATG

. : . : . : . : . : . :
JMFF003H14+ ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC
JMFF025B08+ ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC
JMFF020F16+ ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC
JMFF032L23+ ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC
JMFF016O02+ ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC
JMFF038P16+ ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC
JMFS043C05+ ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC
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consensus ATTCACTGGCTCCATCTACCTTATGCCATGCTCCCTGATCAGCCCTACGATTTACGTGGC

. : . : . : . : . : . :
JMFF003H14+ GTTTGGACTGGGTCTGCCACAACCCTCCCTGATGGCCAGATCATGATGGT
JMFF025B08+ GTTTGGACTGGGTCTGCCACAACCCTCCCTGATG
JMFF020F16+ GTTTGGACTGGGTCTGCCACAACCCTCCCTGATGGCCAGATCATGATGGTCTACACTGGA
JMFF032L23+ GTTTGGACTGGGTCTGCCACAACCCTCCCTGATGGCCAGATCATGATGGTCTACACT
JMFF016O02+ GTTTGGACTGGGTCTGCCACAACCCTCCCTGATGGCCAGATCATGATGGTCTACACTGGA
JMFF038P16+ GTTTGGACTGGGTCTGCCACAACCCTCCCTGATGGCCAGATCATGATGGTCTACACTGGA
JMFS043C05+ GTTTGGACTGGGTCTGCCACAACCCTCCCTGATGGCCAGATCATGATGGTCTACACTGGA
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consensus GTTTGGACTGGGTCTGCCACAACCCTCCCTGATGGCCAGATCATGATGGTCTACACTGGA

. : . : . : . : . : . :
JMFF020F16+ AACACTGATGT
JMFF016O02+ AACACTGATGT
JMFF038P16+ AACACTGATGTGCAGGTACAAAATCTTGCTTACCCAGCCAATCTATCTGACCCGCTGCTC
JMFS043C05+ AACACTGATGTGCAGGTACAAAATCTTGCTTACCCAGCCAATCTATCTGACCCG
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consensus AACACTGATGTGCAGGTACAAAATCTTGCTTACCCAGCCAATCTATCTGACCCGCTGCTC

. : . : . : . : . : . :
JMFF038P16+ C
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consensus C