Alignment Contig 1453

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF041I03+ AGACGGGATCTAGCTGCCTGCTGTTCTGTAGTTCATAGTTACATTCATGCATTTATTCAC
rJMFF042M01+ GTAGTTCATAGTTACATTCATGCATTTATTCAC
____________________________________________________________
consensus AGACGGGATCTAGCTGCCTGCTGTTCTGTAGTTCATAGTTACATTCATGCATTTATTCAC

. : . : . : . : . : . :
rJMSF041I03+ TTTCCATTTGTAATTTTATGATATAATCACGTTCACACTCAGCTACTACATCTACATCAC
rJMFF042M01+ TTTCCATTTGTAATTTTATGATATAATCACGTTCACACTCAGCTACTACATCTACATCAC
rJMSF028J10+ ATTTTATGATATAATCACGTTCACACTCAGCTACTACATCTACATCAC
rJMSF017F22+ TTTTATGATATAATCACGTTCACACTCAGCTACTACATCTACATCAC
rJMFF040E02+ CTCAGCTACTACATCTACATCAC
____________________________________________________________
consensus TTTCCATTTGTAATTTTATGATATAATCACGTTCACACTCAGCTACTACATCTACATCAC

. : . : . : . : . : . :
rJMSF041I03+ ATCAAACATATAGTGAAAATACAAATTATAGTAAAACATGCAGACATGACATGAAGAAAA
rJMFF042M01+ ATCAAACATATAGTGAAAATACAAATTATAGTAAAACATGCAGACATGACATGAAGAAAA
rJMSF028J10+ ATCAAACATATAGTGAAAATACAAATTATAGTAAAACATGCAGACATGACATGAAGAAAA
rJMSF017F22+ ATCAAACATATAGTGAAAATACAAATTATAGTAAAACATGCAGACATGACATGAAGAAAA
rJMFF040E02+ ATCAAACATATAGTGAAAATACAAATTATAGTAAAACATGCAGACATGACATGAAGAAAA
____________________________________________________________
consensus ATCAAACATATAGTGAAAATACAAATTATAGTAAAACATGCAGACATGACATGAAGAAAA

. : . : . : . : . : . :
rJMSF041I03+ TTAAAGCCAAGGCCCCTCTAGCTCAATTTTCCTAGCTTCTAGCTCTTGCGCTGAAAGTTA
rJMFF042M01+ TTAAAGCCAAGGCCCCTCTAGCTCAATTTTCCTAGCTTCTAGCTCTTGCGCTGAAAGTTA
rJMSF028J10+ TTAAAGCCAAGGCCCCTCTAGCTCAATTTTCCTAGCTTCTAGCTCTTGCGCTGAAAGTTA
rJMSF017F22+ TTAAAGCCAAGGCCCCTCTAGCTCAATTTTCCTAGCTTCTAGCTCTTGCGCTGAAAGTTA
rJMFF040E02+ TTAAAGCCAAGGCCCCTCTAGCTCAATTTTCCTAGCTTCTAGCTCTTGCGCTGAAAGTTA
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consensus TTAAAGCCAAGGCCCCTCTAGCTCAATTTTCCTAGCTTCTAGCTCTTGCGCTGAAAGTTA

. : . : . : . : . : . :
rJMSF041I03+ TCTTACAGCAAAAATCTTGCAAGGAACAAGTAGCTAGCTAGCTAGCTTTGATATATAATT
rJMFF042M01+ TCTTACAGCAAAAATCTTGCAAGGAACAAGTAGCTAGCTAGCTAGCTTTGATATATAATT
rJMSF028J10+ TCTTACAGCAAAAATCTTGCAAGGAACAAGTAGCTAGCTAGCTAGCTTTGATATATAATT
rJMSF017F22+ TCTTACAGCAAAAATCTTGCAAGGAACAAGTAGCTAGCTAGCTAGCTTTGATATATAATT
rJMFF040E02+ TCTTACAGCAAAAATCTTGCAAGGAACAAGTAGCTAGCTAGCTAGCTTTGATATATAATT
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consensus TCTTACAGCAAAAATCTTGCAAGGAACAAGTAGCTAGCTAGCTAGCTTTGATATATAATT

. : . : . : . : . : . :
rJMSF041I03+ CTTGGACAAACAAACAATTAAGTACCTGCATGTGTAACTAATATACGCACTTCAACGCTG
rJMFF042M01+ CTTGGACAAACAAACAATTAAGTACCTGCATGTGTAACTAATATACGCACTTCAACGCTG
rJMSF028J10+ CTTGGACAAACAAACAATTAAGTACCTGCATGTGTAACTAATATACGCACTTCAACGCTG
rJMSF017F22+ CTTGGACAAACAAACAATTAAGTACCTGCATGTGTAACTAATATACGCACTTCAACGCTG
rJMFF040E02+ CTTGGACAAACAAACAATTAAGTACCTGCATGTGTAACTAATATACGCACTTCAACGCTG
____________________________________________________________
consensus CTTGGACAAACAAACAATTAAGTACCTGCATGTGTAACTAATATACGCACTTCAACGCTG

. : . : . : . : . : . :
rJMSF041I03+ TAATCTGCAAGAAGATCGATCGAATCTATGGCTGTGAAGGCATTGGCGAGGATGGAGGCT
rJMFF042M01+ TAATCTGCAAGAAGATCGATCGAATCTATGGCTGTGAAGGCATTGGCGAGGATGGAGGCT
rJMSF028J10+ TAATCTGCAAGAAGATCGATCGAATCTATGGCTGTGAAGGCATTGGCGAGGATGGAGGCT
rJMSF017F22+ TAATCTGCAAGAAGATCGATCGAATCTATGGCTGTGAAGGCATTGGCGAGGATGGAGGCT
rJMFF040E02+ TAATCTGCAAGAAGATCGATCGAATCTATGGCTGTGAAGGCATTGGCGAGGATGGAGGCT
____________________________________________________________
consensus TAATCTGCAAGAAGATCGATCGAATCTATGGCTGTGAAGGCATTGGCGAGGATGGAGGCT

. : . : . : . : . : . :
rJMSF041I03+ TAAAATCCGGGTAGTTTGGATATGGAGAAAGCGGTCTTGGGGTTGGGGTTGCAGTAGGTG
rJMFF042M01+ TAAAATCCGGGTAGTTTGGATATGGAGAAAGCGGTCTTGGGGTTGGGGTTGCAGTAGGTG
rJMSF028J10+ TAAAATCCGGGTAGTTTGGATATGGAGAAAGCGGTCTTGGGGTTGGGGTTGCAGTAGGTG
rJMSF017F22+ TAAAATCCGGGTAGTTTGGATATGGAGAAAGCGGTCTTGGGGTTGGGGTTGCAGTAGGTG
rJMFF040E02+ TAAAATCCGGGTAGTTTGGATATGGAGAAAGTGGTCTTGGGGTTGGGGTTGCAGTAGGTG
____________________________________________________________
consensus TAAAATCCGGGTAGTTTGGATATGGAGAAAGCGGTCTTGGGGTTGGGGTTGCAGTAGGTG

. : . : . : . : . : . :
rJMSF041I03+ CTTCTTCTGCTTGGACTACTTCTGTTTTAGCAACTGAATTGATCACTGGAGGCGCTGCTT
rJMFF042M01+ CTTCTTCTGCTTGGACTACTTCTGTTTTAGCAACTGAATTGATCACTGGAGGCGCTGCTT
rJMSF028J10+ CTTCTTCTGCTTGGACTACTTCTGTTTTAGCAACTGAATTGATCACTGGAGGCGCTGCTT
rJMSF017F22+ CTTCTTCTGCTTGGACTACTTCTGTTTTAGCAACTGAATTGATCACTGGAGGCGCTGCTT
rJMFF040E02+ CTTCTTCTGCTTGGACTACTTCTGTTTTAGCAACTGAATTGATCACTGGAGGCGCTGCTT
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consensus CTTCTTCTGCTTGGACTACTTCTGTTTTAGCAACTGAATTGATCACTGGAGGCGCTGCTT

. : . : . : . : . : . :
rJMSF041I03+ CTTCTTTTGGTGTTGCAATGCTCACGTTTGAAACTGATTCAGCTGCTGCAGGAGGGCTTT
rJMFF042M01+ CTTCTTTTGGTGTTGCAATGCTCACGTTTGAAACTGATTCAGCTGCTGCAGGAGGGCTTT
rJMSF028J10+ CTTCTTTTGGTGTTGCAATGCTCACGTTTGAAACTGATTCAGCTGCTGCAGGAGGGCTTT
rJMSF017F22+ CTTCTTTTGGTGTTGCAATGCTCACGTTTGAAACTGATTCAGCTGCTGCAGGAGGGCTTT
rJMFF040E02+ CTTCTTTTGGTGTTGCAATGCTCACGTTTGAAACTGATTCAGCTGCTGCAGGAGGGCTTT
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consensus CTTCTTTTGGTGTTGCAATGCTCACGTTTGAAACTGATTCAGCTGCTGCAGGAGGGCTTT

. : . : . : . : . : . :
rJMSF041I03+ CCTCTGTAGGTGCAGGTAGAGCCTTGCTACTTACTGGAGTTGGTAGAAGTGCCTTCCCTA
rJMFF042M01+ CCTCTGTAGGTGCAGGTAGAGCCTTGCTACTTACTGGAGTTG
rJMSF028J10+ CCTCTGTAGGTGCAGGTAGAGCCTTGCTACTTACTGGAGTTGGTAGAAGTGCCTTCCCTA
rJMSF017F22+ CCTCTGTAGGTGCAGGTAGAGCCTTGCTACTTACTGGAGTTGGTAGAAGTGCCTTCCCTA
rJMFF040E02+ CCTCTGTAGGTGCAGGTAGAGCCTTGCTACTTACTGGAGTTGGTAGAAGTGCCTTCCCTA
____________________________________________________________
consensus CCTCTGTAGGTGCAGGTAGAGCCTTGCTACTTACTGGAGTTGGTAGAAGTGCCTTCCCTA

. : . : . : . : . : . :
rJMSF041I03+ TTTGCTTAATCTCATCTACAAGCTCCCTTAGGAGCAACCTTGGTGTTTAAGAACTCATCA
rJMSF028J10+ TTTGCTTAATCTCATCTACAAGCTCC-TTAGGAGCAACCTTGGTGTTTAAGAACTCATCA
rJMSF017F22+ TTTGCTTAATCTCATCTACAAGCTCC-TTAGGAGCAACCTTGGTGTTTAAGAACTCATCA
rJMFF040E02+ TTTGCTTAATCTCATCTACAAGCTCC-TTAGGAGCAACCTTGGTGTTTAAGAACTCATCA
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consensus TTTGCTTAATCTCATCTACAAGCTCC-TTAGGAGCAACCTTGGTGTTTAAGAACTCATCA

. : . : . : . : . : . :
rJMSF041I03+ ACTCG-TTCAAGTGTTTTCTTTCTGTCC
rJMSF028J10+ ACTTGGTTCAAGTGTTTTCTTTCTGTCCTCTGCAAACAGCAGTTTCTTGCTGAAAACTTG
rJMSF017F22+ ACTTG-TTCAAGTGTTTTCTTTCTGTCCTCTGCAAACAGCAGTTTCTTGCTGAAAACTTG
rJMFF040E02+ ACTTG-TTCAAGTGTTTTCTTTCTGTCCTCTGCAAACAGCAGTTTCTTGCTGAAAACTTG
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consensus ACTTG-TTCAAGTGTTTTCTTTCTGTCCTCTGCAAACAGCAGTTTCTTGCTGAAAACTTG

. : . : . : . : . : . :
rJMSF028J10+ AATAAT
rJMSF017F22+ AATAAT
rJMFF040E02+ AATAATTGCAGCAGAACCGAGCAGTTGAAAGAATTGTTTCTACCTCTGAAAACGCCAATG
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consensus AATAATTGCAGCAGAACCGAGCAGTTGAAAGAATTGTTTCTACCTCTGAAAACGCCAATG

. : . : . : . : . : . :
rJMFF040E02+ CTCCTATTCCAGCTGCTGCTG
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consensus CTCCTATTCCAGCTGCTGCTG