Alignment Contig 14103

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF045L21+ AGAGAGAGATAGAAGAACAAGCATGATCACTGGGAANATTTTGGTGGATAAACACAGACC
rJMFF044M24+ ATTTTGGTGGATAAACACAGACC
rJMFF019K18+ GGTGGATAAACACAGACC
rJMFF042M02+ GGTGGATAAACACAGACC
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consensus AGAGAGAGATAGAAGAACAAGCATGATCACTGGGAANATTTTGGTGGATAAACACAGACC

. : . : . : . : . : . :
rJMSF045L21+ ACAAGTCCCCCCTAAACCNTCAGAGGAGCAGAGAATCTAAAGATAGCATAACTTTCAGGA
rJMFF044M24+ ACAA-TCCCCCCTAAACCATCAGAGGAGCAGAGAATCTAAAGATAGCATAACTTTCAGGA
rJMFF019K18+ ACAA-TCCCCCCTAAACCATCAGAGGAGCAGAGAATCTAAAGATAGCATAACTTTCAGGA
rJMFF027K12+ GAGGAGCAGAGAATCTAAAGATAGCATAACTTTCAGGA
rJMFF042M02+ ACAA-TCCCCCCTAAACCATCAGAGGAGCAGAGAATCTAAAGATAGCATAACTTTCAGGA
rJMSF019H05+ ATCCCCCCTAAACCATCAGAGGAGCAGAGAATCTAAAGATAGCATAACTTTCAGGA
rJMSF038I22+ AAAGATAGCATAACTTTCAGGA
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consensus ACAA-TCCCCCCTAAACCATCAGAGGAGCAGAGAATCTAAAGATAGCATAACTTTCAGGA

. : . : . : . : . : . :
rJMSF045L21+ TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
rJMFF044M24+ TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
rJMFF019K18+ TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
rJMFF027K12+ TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
rJMFF042M02+ TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
rJMSF019H05+ TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
rJMSF024K02+ CATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
rJMSF037O17+ TCCTTTTATTGGATAANNGATGACTCTAAGTCCTTTCNACA
rJMSF038I22+ TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTATAA-TCCTTTCTACA
rJMSF011B10+ CATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA
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consensus TTTAGGTGTTACAGTTACATCCTTTTATTGGATAAAAGATGACTCTAA-TCCTTTCTACA

. : . : . : . : . : . :
rJMSF045L21+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMFF044M24+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMFF019K18+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMFF027K12+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMFF042M02+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMSF019H05+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMSF024K02+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMSF037O17+ ANACTTCAGCTTTATGTGTGGAGATAACTATANGCACTGCAGTGCTGGATTNCCTGNTTC
rJMSF038I22+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
rJMSF011B10+ ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC
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consensus ACACTTCAGCTTTATGTGTGGAGATAACTATATGCACTGCAGTGCTGGATTTCCTGTTTC

. : . : . : . : . : . :
rJMSF045L21+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMFF044M24+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMFF019K18+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMFF027K12+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMFF042M02+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMSF019H05+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMSF024K02+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMSF037O17+ CTGCATTACAAAATCACACACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMSF038I22+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
rJMSF011B10+ CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG
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consensus CTGCATTACAAAATCACGCACTTTGCTAGGGGGATGATGATGTTATCGTCCAAGAAACCG

. : . : . : . : . : . :
rJMSF045L21+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMFF044M24+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMFF019K18+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMFF027K12+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMFF042M02+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMSF019H05+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMSF024K02+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMSF037O17+ TGATTTCAGATTAACGATGCA
rJMSF038I22+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
rJMSF011B10+ TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG
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consensus TGATTTCAGATTAACGATGCAGCGCTCTCACGAGTGGTGTGATCGATATCAGGAAGATCG

. : . : . : . : . : . :
rJMSF045L21+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
rJMFF044M24+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
rJMFF019K18+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
rJMFF027K12+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGACTGATGCCCGGTTGCATT
rJMFF042M02+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
rJMSF019H05+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
rJMSF024K02+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
rJMSF038I22+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
rJMSF011B10+ GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT
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consensus GAGCTTACAGAGAATTTCAGCCATCTCTTCTTCTCGACATGCCTGATGCCCGGTTGCATT

. : . : . : . : . : . :
rJMSF045L21+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMFF044M24+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMFF019K18+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMFF027K12+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMFF042M02+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMSF019H05+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMSF024K02+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMSF038I22+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
rJMSF011B10+ ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC
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consensus ACGAGCCCGATCGCGATGGCTCCGAGGCTTATGACGAGGACTTTGAGGGATGAGAAGGCC

. : . : . : . : . : . :
rJMSF045L21+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
rJMFF044M24+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
rJMFF019K18+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
rJMFF027K12+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
rJMFF042M02+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCTGATTGTGCCA
rJMSF019H05+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
rJMSF024K02+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
rJMSF038I22+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
rJMSF011B10+ AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA
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consensus AACACCACGCCTATCAGTATGGTCGGGGGAACACACATTAGAACGGCTCCGATTGTGCCA

. : . : . : . : . : . :
rJMSF045L21+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
rJMFF044M24+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATA
rJMFF019K18+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
rJMFF027K12+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
rJMFF042M02+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
rJMSF019H05+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
rJMSF024K02+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
rJMSF038I22+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
rJMSF011B10+ ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT
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consensus ACGGGTATCTTGTATGGTCGTGGGGCGTCTGGGCTCTTGATCCTAAGCCATACGAATGCT

. : . : . : . : . : . :
rJMSF045L21+ ATAAACTCCAAAATCATTCCAAAACNATACAGGAAGTTTTCGGCTGCCACGATCTCCTGA
rJMFF019K18+ ATAAACTCCAAAATCATTCCAAAACAATACAGGAAGTTTTCGGCTGCCACGATCTCCTGA
rJMFF027K12+ ATAAACTCCAAAATCATTCCAAAACAATACAGGAAGTTTTCGGCTGCCACGACCTCCTGA
rJMFF042M02+ ATAAACTCCAAAATCATTCCAAAACAATAC
rJMSF019H05+ ATAAACTCCAAAATCATTCCAAAACAATACAGGAAGTTTTCGGCTGCCACGATCTCCTGA
rJMSF024K02+ ATAAACTCCAAAATCATTCCAAAACAATACAGGAAGTTTTCGGCTGCCACGATCTCCTGA
rJMSF038I22+ ATAAACTCCAAAATCATTCCAAAACAATACAGGAAGTTTTCGGCTGCCACGATCTCCTGA
rJMSF011B10+ ATAAACTCCAAAATCATTCCAAAACAATACAGGAAGTTTTCGGCTGCCACGATCTCCTGA
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consensus ATAAACTCCAAAATCATTCCAAAACAATACAGGAAGTTTTCGGCTGCCACGATCTCCTGA

. : . : . : . : . : . :
rJMSF045L21+ AAGCTCAGCCAGGATAGTAAAATAACACCCGATGCCGA
rJMFF019K18+ AAGCTCAGCCAGGATAGTAAAATAACACCCGATGCCGAGAAGAGAATCCCGATTAGCGGG
rJMFF027K12+ NAGCTCA
rJMSF019H05+ AAGCTCAGCCAGGATAGTAAAATAACACCCGATGCCGAGAAGAGAATCCCGATTAGCGGG
rJMSF024K02+ AAGCTCAGCCAGGATAGTAAAATAACACCCGATGCCGAGAAGAGAATCCCGATTAGCGGG
rJMSF038I22+ AAGCTCAGCCAGGATAGTAAAATAACACCCGATGCCGAGAAGAGAATCCCGATTAGCGGG
rJMSF011B10+ AAGCTCAGCCAGGATAGTAAAATAACACCCGATGCCGAGAAGAGAATCCCGATTAGCGGG
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consensus AAGCTCAGCCAGGATAGTAAAATAACACCCGATGCCGAGAAGAGAATCCCGATTAGCGGG

. : . : . : . : . : . :
rJMFF019K18+ GTTCCATGGCGAGACCTCTTCGCGAAAAATTCGGGAAGCATGCCCCTCTCGGCCATTCCA
rJMSF019H05+ GTTCCATGGCGAGACCTCTTCGCGAAAAATTCGGGAAGCATGCCCCTCTCGGCCATTCCA
rJMSF024K02+ GTTCCATGGCGAGACCTCTTCGCGAAAAATTCGGGAAGCATGCCCCTCTCGGCCATTCCA
rJMSF038I22+ GTTCCATGGCGAGACCTCTTCGCGAAAAATTCGGGAAGCATGCCCCTCTCGGCCATTCCA
rJMSF011B10+ GTTCCATGGCGAGACCTCTTCGCGAAAAATTCGGGAAGCATGCCCCTCTCGGCCATTCCA
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consensus GTTCCATGGCGAGACCTCTTCGCGAAAAATTCGGGAAGCATGCCCCTCTCGGCCATTCCA

. : . : . : . : . : . :
rJMFF019K18+ AGAAGTTGAAACGAGTCGCTACTCATCTCGGCTACAAACATCCCCATGTT
rJMSF019H05+ AGAAGTTGAAACGAGTCGCTACTCATCTCGGCTACAAACATCCCCATGTTCGACA
rJMSF024K02+ AGAAGTTGAAACGAGTCGCTACTCATCTCGGCTACAAACATCCCCATGTT
rJMSF038I22+ AGAAGTTGAAACGAGTCGCTACTCATCTCGGCTACAAACATCCCCATGTTCGACATTGCA
rJMSF011B10+ AGAAGTTGAAACGAGTCGCTACTCATCTCGGCTACAAACATCCCCATGTTCGACATTGCA
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consensus AGAAGTTGAAACGAGTCGCTACTCATCTCGGCTACAAACATCCCCATGTTCGACATTGCA

. : . : . : . : . : . :
rJMSF038I22+ GCAGCCCCTTGAACCCACCAACTTAGCCACGCCCCCACCCGAGGAATTTTCGCGATGTC
rJMSF011B10+ GCAGCCCCTTGAACCCACCAACTTAGCC
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consensus GCAGCCCCTTGAACCCACCAACTTAGCCACGCCCCCACCCGAGGAATTTTCGCGATGTC