Alignment Contig 14079

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF042F01- TTTTGACCNTNTTGAATNNGNGAGAATGCAATTTGCCCCCNTCCGTNNNTTTAAGGGCAG
____________________________________________________________
consensus TTTTGACCNTNTTGAATNNGNGAGAATGCAATTTGCCCCCNTCCGTNNNTTTAAGGGCAG

. : . : . : . : . : . :
rJMSF042F01- GNANGGTTTTGCTTTTGGTCAGAAACACTAATTTACAACNCCGCATATGCTCTGGGGTTT
____________________________________________________________
consensus GNANGGTTTTGCTTTTGGTCAGAAACACTAATTTACAACNCCGCATATGCTCTGGGGTTT

. : . : . : . : . : . :
rJMSF042F01- TTTTTTTTTNGGGTTTTACNTAAATTCGTGCGGCCNGNGGCCAGCCAGCCACCATGGCGG
____________________________________________________________
consensus TTTTTTTTTNGGGTTTTACNTAAATTCGTGCGGCCNGNGGCCAGCCAGCCACCATGGCGG

. : . : . : . : . : . :
rJMSF042F01- TCCACCCAAGCCAATATATATAGCCGCCTCTGTTNCCCATNCAATTCGCTTCATATCACT
rJMSF025D13- CCCATTCAATTCGCTTCATATCACT
____________________________________________________________
consensus TCCACCCAAGCCAATATATATAGCCGCCTCTGTTNCCCATTCAATTCGCTTCATATCACT

. : . : . : . : . : . :
rJMSF042F01- CATTCTCCCTCCCAAGGAACCANCACTACAATCAACACAGGTCGTCCATTTGCATACACT
rJMSF025D13- CATTCTCCCTCCCAAGGAACCAACACTACAATCAACACAGGTCGTCCATTTGCATACACT
rJMSF028L15- TCGTCCATTTGCATACACT
____________________________________________________________
consensus CATTCTCCCTCCCAAGGAACCAACACTACAATCAACACAGGTCGTCCATTTGCATACACT

. : . : . : . : . : . :
rJMSF042F01- AACTAGCTATGGCTCCAGCAACCGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTG
rJMSF025D13- AACTAGCTATGGCTCCAGCAACCGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTG
rJMSF028L15- AACTAGCTATGGCTCCAGCAACCGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTG
____________________________________________________________
consensus AACTAGCTATGGCTCCAGCAACCGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTG

. : . : . : . : . : . :
rJMSF042F01- GTGTTGCCCGTACACCAATGGGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCA
rJMSF025D13- GTGTTGCCCGTACACCAATGGGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCA
rJMSF028L15- GTGTTGCCCGTACACCAATGGGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCA
____________________________________________________________
consensus GTGTTGCCCGTACACCAATGGGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCA

. : . : . : . : . : . :
rJMSF042F01- AGCTTGGATCCTTAGCTATTGAAAGTGCTCTTAAGAGAGCGAGTGTTGATCCGTCTCTTG
rJMSF025D13- AGCTTGGATCCTTAGCTATTGAAAGTGCTCTTAAGAGAGCGAGTGTTGATCCGTCTCTTG
rJMSF028L15- AGCTTGGATCCTTAGCTATTGAAAGTGCTCTTAAGAGAGCGAGTGTTGATCCGTCTCTTG
____________________________________________________________
consensus AGCTTGGATCCTTAGCTATTGAAAGTGCTCTTAAGAGAGCGAGTGTTGATCCGTCTCTTG

. : . : . : . : . : . :
rJMSF042F01- TTGAAGAAGTTTTCTTTGGAAATGTACTCGGTGCAAATCTGGGACAGGCTCCAGCCAGAC
rJMSF025D13- TTGAAGAAGTTTTCTTTGGAAATGTACTCGGTGCAAATCTGGGACAGGCTCCAGCCAGAC
rJMSF028L15- TTGAAGAAGTTTTCTTTGGAAATGTACTCGGTGCAAATCTGGGACAGGCTCCAGCCAGAC
____________________________________________________________
consensus TTGAAGAAGTTTTCTTTGGAAATGTACTCGGTGCAAATCTGGGACAGGCTCCAGCCAGAC

. : . : . : . : . : . :
rJMSF042F01- AAGCAGCACTGGGTGCAGGAATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTT
rJMSF025D13- AAGCAGCACTGGGTGCAGGAATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTT
rJMSF028L15- AAGCAGCACTGGGTGCAGGAATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTT
____________________________________________________________
consensus AAGCAGCACTGGGTGCAGGAATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTT

. : . : . : . : . : . :
rJMSF042F01- GTGCATCTGGAATGAAAGCAACTATTCTTGCTGCACAAAGTATCCAATTAGGCATCAATG
rJMSF025D13- GTGCATCTGGAATGAAAGCAACTATTCTTGCTGCACAAAGTATCCAATTAGGCATCAATG
rJMSF028L15- GTGCATCTGGAATGAAAGCAACTATTCTTGCTGCACAAAGTATCCAATTAGGCATCAATG
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consensus GTGCATCTGGAATGAAAGCAACTATTCTTGCTGCACAAAGTATCCAATTAGGCATCAATG

. : . : . : . : . : . :
rJMSF042F01- ATGTTGTCGTGGCCGGTGGAATGGAAAGCATGTCTAATGTTCATAAATACTTTGCAGAAG
rJMSF025D13- ATGTTGTCGTGGCCGGTGGAATGGAAAGCATGTCTAATGTTCATAAATACTTTGCAGAAG
rJMSF028L15- ATGTTGTCGTGGCCGGTGGAATGGAAAGCATGTCTAATGTTCATAAATACTTTGCAGAAG
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consensus ATGTTGTCGTGGCCGGTGGAATGGAAAGCATGTCTAATGTTCATAAATACTTTGCAGAAG

. : . : . : . : . : . :
rJMSF042F01- CAAGGTCAATATCCAACAACATATGGTGAATTTCAACTGCAGTGGTTTCTCTAATATCTG
rJMSF025D13- CAAGGTCAATATCCAACAACATATGGTGAATTTCAACTGCAGTGGTTTCTCTAATATCTG
rJMSF028L15- CAAGGTCAATATCCAACAACATATGGTGAATTTCAACTGCAGTGGTTTCTCTAATATCTG
JMFS155D07+ AGGTCAATATCCAACAACATATGGTGAATTTCAACTGCAGCGGTTTCTCTAATATCTG
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consensus CAAGGTCAATATCCAACAACATATGGTGAATTTCAACTGCAGTGGTTTCTCTAATATCTG

. : . : . : . : . : . :
rJMSF042F01- ACAAAGTAGTACAGAATAGTTTTTACCATCTAATTTTACTCTGAGGATTGAAGCTAGAAT
rJMSF025D13- ACAAAGTAGTACAGAATAGTTTTTACCATCTAATTTTACTCTGAGGATTGAAGCTAGAAT
rJMSF028L15- ACAAAGTAGTACAGAATAGTTTTTACCATCTAATTTTACTCTGAGGATTGAAGCTAGAAT
JMFS155D07+ ACAAAGTAGTGCAGAATAGTTTTTACCATCTAATTTTACTGTGAGGATTGAAGCTAGAAT
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consensus ACAAAGTAGTACAGAATAGTTTTTACCATCTAATTTTACTCTGAGGATTGAAGCTAGAAT

. : . : . : . : . : . :
rJMSF042F01- GGTTGAACGCTG-----------CAGTGATTTTTGACAAATCTTGAATCTGTGTAGAATT
rJMSF025D13- GGTTGAACGCTG-----------CAGTGATTTTTGACAAATCTTGAATCTGTGTAGAATT
rJMSF028L15- GGTTGAACGCTG-----------CAGTGATTTTTGACAAATCTTGAATCTGTGTAGAATT
JMFS155D07+ GGTTGAACGCTGGCACACCTTTGCGGTGATTTTTGACACATCTTGAATCTGTGTAGAATT
____________________________________________________________
consensus GGTTGAACGCTG-----------CAGTGATTTTTGACAAATCTTGAATCTGTGTAGAATT

. : . : . : . : . : . :
rJMSF042F01- GCAATTTTGCACCCTTCCGCTTCTGTCTAAGAGGCATGGAATGGTTTTTCTTATTGGTCA
rJMSF025D13- GCAATTTTGCACCCTTCCGCTTCTGTCTAAGAGGCATGGAATGGTTTTTCTTATTGGTCA
rJMSF028L15- GCAATTTTGCACCCTTCCGCTTCTGTCTAAGAGGCATGGAATGGTTTTTCTTATTGGTCA
JMFS155D07+ GCAATTTTGCACCCTTCCGCT-CTGTCTAAGAGGCATGGAATGGTTTTGCTTTTTGGTCA
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consensus GCAATTTTGCACCCTTCCGCTTCTGTCTAAGAGGCATGGAATGGTTTTTCTTATTGGTCA

. : . : . : . : . : . :
rJMSF042F01- GAAACACTAATTTAACAACACCGCATATGCTCTTGCGGTCTTCTTC
rJMSF025D13- GAAACACTAATTTAACAACACCGCATATGCTCTTGCGGTCTTCTTC
rJMSF028L15- GAAACACTAATTTAACAACACCGCATATGCTCTTGCGGTCTTCTTC
JMFS155D07+ GAAACACTAATTTAACAACACCGCATATGCTCTTGCGGTCTTCTTCTTTTGGGTTTTACC
____________________________________________________________
consensus GAAACACTAATTTAACAACACCGCATATGCTCTTGCGGTCTTCTTCTTTTGGGTTTTACC

. : . : . : . : . : . :
JMFS155D07+ TAAATTCGTGCGGCAGGCGGCCAGCCAGCCACCATGGCGGTCCACCCAAGCCAATATATA
JMSF031D20+ GGCCAGCCAGCCACCATGGCGGTCCACCCAAGCCAATATATA
____________________________________________________________
consensus TAAATTCGTGCGGCAGGCGGCCAGCCAGCCACCATGGCGGTCCACCCAAGCCAATATATA

. : . : . : . : . : . :
JMFS155D07+ TAGCCGCCTCTGTTTCCCATTCAATTCGCTTCATATCACTCATTCTCCCTCCCA-GGAAC
JMSF031D20+ TAGCCGCCTCTGTTTCCCATTCAATTCGCGTCCTTTCACTCATTCTCCCTCCCAAGGAAC
JMSF010L04+ GGCGTCCTTTCACTCATTCTCCCTCCCAAGGAAC
JMSF011L04+ GGCGTCCTTTCACTCATTCTCCCTCCCAAGGAAC
JMSF012K07+ GGCGTCCTTTCACTCATTCTCCCTCCCAAGGAAC
JMSF015C01+ GGCGTCCTTTCACTCATTCTCCCTCCCAAGGAAC
JMSF044N10+ GGCGTCCTTTCACTCATTCTCCCTCCCAAGGAAC
JMFF016M06+ GTCCTTTCACTCATTCTCCCTCCCAAGGAAC
JMFN012J23+ GGAAC
JMFF010P09+ TCCTTTCACTCATTCTCCCTCCCAAGGAAC
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consensus TAGCCGCCTCTGTTTCCCATTCAATTGGCGTCCTTTCACTCATTCTCCCTCCCAAGGAAC

. : . : . : . : . : . :
JMFS155D07+ CAACACTACAATCAACACAGGTCG
JMSF031D20+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMSF010L04+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMSF011L04+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMSF012K07+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMSF015C01+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMSF044N10+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMFF016M06+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMFN012J23+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
JMFF010P09+ CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA
____________________________________________________________
consensus CAACACTACAATCAACACAGGTCGTCCATTTGCATACACTAACTAGCTATGGCTCCAGCA

. : . : . : . : . : . :
JMSF031D20+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMSF010L04+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMSF011L04+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMSF012K07+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMSF015C01+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMSF044N10+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMFF016M06+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMFN012J23+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
JMFF010P09+ ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG
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consensus ACAGCAGAAACCATCAATGCTAGAGATGTTTGCATTGTTGGTGTTGCCCGTACACCAATG

. : . : . : . : . : . :
JMSF031D20+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMSF010L04+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMSF011L04+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMSF012K07+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMSF015C01+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMSF044N10+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMFF016M06+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMFN012J23+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
JMFF010P09+ GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT
____________________________________________________________
consensus GGTGGCTTTCTGGGCTCTCTTTCATCATTGCCAGCTACCAAGCTTGGATCCATAGCTATT

. : . : . : . : . : . :
JMSF031D20+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMSF010L04+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMSF011L04+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMSF012K07+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMSF015C01+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMSF044N10+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMFF016M06+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMFN012J23+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
JMFF010P09+ GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA
____________________________________________________________
consensus GAAAGTGCTCTTAAGAGAGGGAGTGTTGATCCGTCTCTTGTTGAAGAAGTTTTCTTTGGA

. : . : . : . : . : . :
JMSF031D20+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA
JMSF010L04+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGG
JMSF011L04+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAG
JMSF012K07+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA
JMSF015C01+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA
JMSF044N10+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA
JMFF016M06+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA
JMFN012J23+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA
JMFF010P09+ AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA
____________________________________________________________
consensus AATGTACTCAGTGCAAATCTGGGACAGGCTCCAGCCAGACAAGCAGCACTGGGTGCAGGA

. : . : . : . : . : . :
JMSF031D20+ ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGCA
JMSF012K07+ ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGCA
JMSF015C01+ ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGCA
JMSF044N10+ ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGCA
JMFF016M06+ ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGCA
JMFN012J23+ ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGCA
JMFF010P09+ ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGAA
____________________________________________________________
consensus ATACCAAACACAGTGGTCTGCTCCACTGTTAACAAAGTTTGTGCATCTGGAATGAAAGCA

. : . : . : . : . : . :
JMSF031D20+ ACTATGCTTGCTGCACAAAGTATCCAATTAGGCATCAATGATGTTGTCGTGGCCGGTGGA
JMSF012K07+ ACTATGCTTGCTGCACAAAGTATCCAATTAGGCATCAATGATGTTGTCGTGGCCGGTGGA
JMSF015C01+ ACTATGCTTGCTGCACAAAGTATCC
JMSF044N10+ ACTATGCTTGCTGCACAAAGTATCCAATTAGGCATCAATGATGTTGTCGTGGCCGGTGGA
JMFF016M06+ ACTATGCTTGCTGCACAAAGTATCCAATTAGGCATCAATGATGTTGTCGTGGCCGGTGGA
JMFN012J23+ ACTATGCTTGCTGCACAAAGTATCCAATTAGGCATCAATGATGTTGTCGTGGCCGGTGGA
JMFF010P09+ ACTATGCTTGCTGCACAAAGTATCCAATTAGGCATCAATGATGTTGTCGTGGCCGGTGGA
____________________________________________________________
consensus ACTATGCTTGCTGCACAAAGTATCCAATTAGGCATCAATGATGTTGTCGTGGCCGGTGGA

. : . : . : . : . : . :
JMSF031D20+ ATGGAAAGCATGTCTAATGTTCCTAAATACTTTGCAGAAGCAAGGAAAGGATCTCGCCTT
JMSF012K07+ ATGGAAAGCATGTCTAATGTTCCTAAATACTTTGC
JMSF044N10+ ATGGAAAGCATGTCTAATGTTCCTAAATACTTTGCAGAAGCAAGG
JMFF016M06+ ATGGAAAGCATGTCTAATGTTCCTAAATACTTTGCAGAAGCAAGGAAAGGATCTCGCCTT
JMFN012J23+ ATGGAAAGCATGTCTAATGTTCCTAAATACTTTGCAGAAGCAAGG
JMFF010P09+ ATGGAAAGCATGTCTAATGTTCCTAAATACTTTGCAGAAGCAAGGAAAGGATCTCGCCTT
____________________________________________________________
consensus ATGGAAAGCATGTCTAATGTTCCTAAATACTTTGCAGAAGCAAGGAAAGGATCTCGCCTT

. : . : . : . : . : . :
JMSF031D20+ GGGCATGATTCTCTTGTTGATGG
JMFF016M06+ GGGCATGATTCTCTTGTTGATGGGATGCTTA
JMFF010P09+ GGGCATGATTCTCTTGTTGATGGGATGC
____________________________________________________________
consensus GGGCATGATTCTCTTGTTGATGGGATGCTTA