Alignment Contig 14042

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF036P14+ CATTGCGGGTATGACCATCGATTAACGATAACATTAAAATGGACGGGTACAAGTTTACGA
rJMSF051N08+ ACATTAAAATGGACGGGTACAAGTT-ACGA
rJMSF011D20+ ACATTAAAATGGACGGGTACAAGTT-ACGA
rJMSF013F11+ AGTTACGA
rJMSF013L18+ AGTTACGA
rJMSF023B07+ ACATTAAAATGGACGGGTACAAGTT-ACGA
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consensus CATTGCGGGTATGACCATCGATTAACGATAACATTAAAATGGACGGGTACAAGTTTACGA

. : . : . : . : . : . :
rJMSF036P14+ TCCTAGTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT
rJMSF051N08+ TCCTAGTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT
rJMSF011D20+ TCCTAGTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT
rJMSF013F11+ TCCTAGTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT
rJMSF029H20+ GTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT
rJMSF013L18+ TCCTAGTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT
rJMSF023B07+ TCCTAGTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT
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consensus TCCTAGTACATTTAACATGAAGGAAGATGGTAAGATTGAAATGTATCATGTATGTAAGCT

. : . : . : . : . : . :
rJMSF036P14+ AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT
rJMSF051N08+ AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT
rJMSF011D20+ AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT
rJMSF013F11+ AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT
rJMSF029H20+ AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT
rJMSF013L18+ AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT
rJMSF023B07+ AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT
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consensus AGCTTATTGCATGTCTAGAAAACATTATACTTATCATTAAACTACATCATTATCACAAGT

. : . : . : . : . : . :
rJMSF036P14+ TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT
rJMSF051N08+ TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT
rJMSF011D20+ TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT
rJMSF013F11+ TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT
rJMSF029H20+ TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT
rJMSF013L18+ TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT
rJMSF023B07+ TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT
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consensus TACGATCCGAGTTGCCATTCTCAGCATGAACAAGGTCGGAGTCCTTATTGATGGCCTTCT

. : . : . : . : . : . :
rJMSF036P14+ TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG
rJMSF051N08+ TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG
rJMSF011D20+ TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG
rJMSF013F11+ TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG
rJMSF029H20+ TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG
rJMSF013L18+ TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG
rJMSF023B07+ TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG
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consensus TGTATGTATACATTTTCGCCACCACAACGAAAACTCCGAGGTTTACCACGCTGAGCGCCG

. : . : . : . : . : . :
rJMSF036P14+ CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG
rJMSF051N08+ CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG
rJMSF011D20+ CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG
rJMSF013F11+ CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG
rJMSF029H20+ CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG
rJMSF013L18+ CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG
rJMSF023B07+ CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG
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consensus CCAAAAGCCAGAAGAAGTAGTCCAGGTGGCCGCGGTTGAGGTTGCTGGCAAGCCAACCAG

. : . : . : . : . : . :
rJMSF036P14+ GCCTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT
rJMSF051N08+ GCTTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT
rJMSF011D20+ GCTTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT
rJMSF013F11+ GCTTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT
rJMSF029H20+ GCTTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT
rJMSF013L18+ GCTTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT
rJMSF023B07+ GCTTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT
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consensus GCTTGCCATTCCTCGTACTAATGTCTGTAACAATGGTGACGAGGAAAGAGCTCAAATAGT

. : . : . : . : . : . :
rJMSF036P14+ TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG
rJMSF051N08+ TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG
rJMSF011D20+ TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG
rJMSF013F11+ TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG
rJMSF029H20+ TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG
rJMSF013L18+ TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG
rJMSF023B07+ TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG
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consensus TCCCAATGGCGGCGGTGGTAAGGGAAAGGGCAGTGCCCAAACTTCTCATGGAATCCGGGG

. : . : . : . : . : . :
rJMSF036P14+ CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA
rJMSF051N08+ CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA
rJMSF011D20+ CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA
rJMSF013F11+ CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA
rJMSF029H20+ CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA
rJMSF013L18+ CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA
rJMSF023B07+ CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA
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consensus CTTGGTCGTAGAAAAACTCCAATTGTCCGATGAATGTGAACACTTCTGCGCACCCAATTA

. : . : . : . : . : . :
rJMSF036P14+ TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAC
rJMSF051N08+ TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAT
rJMSF011D20+ TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAT
rJMSF013F11+ TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAT
rJMSF029H20+ TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAT
rJMSF013L18+ TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAT
rJMSF023B07+ TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAT
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consensus TGAAATACTGGGGAACTTGCCAGAAAACTGAGATGGGCACTTCTTTAGCGTCGTAAAGAT

. : . : . : . : . : . :
rJMSF036P14+ TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG
rJMSF051N08+ TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG
rJMSF011D20+ TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG
rJMSF013F11+ TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG
rJMSF029H20+ TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG
rJMSF013L18+ TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG
rJMSF023B07+ TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG
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consensus TGTGCCTTTTCGCCATTGAGAGCCGCACCATCTCTAACACGGCGGCGGAAACCATGGCGG

. : . : . : . : . : . :
rJMSF036P14+ AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCANGCCGGACT
rJMSF051N08+ AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCAAGCCGGACTTGTGGC
rJMSF011D20+ AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCAAGCCGGACTTGTGGC
rJMSF013F11+ AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCAAGCCGGACTTGTGGC
rJMSF029H20+ AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCAAGCCGGACTTGTGGC
rJMSF013L18+ AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCAAGCCGGACTTGTGGC
rJMSF023B07+ AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCANGCCGGACTTGTGGC
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consensus AGATGGATATGAACAAGCCGACACCCATTCTTTGGAGGTGAGTCAAGCCGGACTTGTGGC

. : . : . : . : . : . :
rJMSF051N08+ CGGTGAGTTTTCTGGCGGCGGGGACTATGATCTTGTCGTA
rJMSF011D20+ CGGTGAGTTTTCTGGCGGCGGGGACTATGATCTTGTCGTA
rJMSF013F11+ CGGTGAGTTTTCTGGCGGCGGGGACTATGATCTTGTCGTA
rJMSF029H20+ CGGTGA
rJMSF013L18+ CGGTGAGTTTTCTGGCGGCGGGGACTATGATCTTGTCGTA
rJMSF023B07+ CGGTGAGTTTTCTGGCGGCGGGGACTATGATCTTGTCGTAGA
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consensus CGGTGAGTTTTCTGGCGGCGGGGACTATGATCTTGTCGTAGA