Alignment Contig 14018

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF031G14+ CTAGTTGAATCAACTAGAATCAAGAGGGGGCTCTCCCGTCGGCTCGTTGAATCAATCGAA
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consensus CTAGTTGAATCAACTAGAATCAAGAGGGGGCTCTCCCGTCGGCTCGTTGAATCAATCGAA

. : . : . : . : . : . :
rJMSF031G14+ TGAATCAAGAGGGGGCTCTCCCGTGGGTATTTGGATTGAGCGAGTACTTACAAGAGCGTC
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consensus TGAATCAAGAGGGGGCTCTCCCGTGGGTATTTGGATTGAGCGAGTACTTACAAGAGCGTC

. : . : . : . : . : . :
rJMSF031G14+ TCCAGAAACGCCAAGATTGCCATACCAGCTGCCCAAACATCGTCGTCCAACACGTGCTCT
rJMFF034D17+ CTGCCCAAACATCGTCGTCCAACACGTGCTCT
rJMFF040M09+ GCCATACCAGCTGCCCAAACATCGTCGTCCAACACGTGCTCT
rJMFF015M07+ GCCATACCAGCTGCCCAAACATCGTCGTCCAACACGTGCTCT
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consensus TCCAGAAACGCCAAGATTGCCATACCAGCTGCCCAAACATCGTCGTCCAACACGTGCTCT

. : . : . : . : . : . :
rJMSF031G14+ TCGGGGGAATGACTAATGCCTCCACGGCAGCGCACAAATAGCATCCCGACCTTGGTTAGA
rJMFF034D17+ TCGGGGGAATGACTAATGCCTCCACGGCAGCGCACAAATAGCATCCCGACCTTGGTTAGA
rJMFF040M09+ TCGGGGGAATGACTAATGCCTCCACGGCACCGCACAAATAGCATCCCGACCTTGGTTAGA
rJMFF015M07+ TCGGGGGAATGACTAATGCCTCCACGGCACCGCACAAATAGCATCCCGACCTTGGTTAGA
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consensus TCGGGGGAATGACTAATGCCTCCACGGCACCGCACAAATAGCATCCCGACCTTGGTTAGA

. : . : . : . : . : . :
rJMSF031G14+ CGAGACATGGCCATTGCGTCGTGCCCAGCTCCACTCATCAGTACAGGCACATCATCGTCG
rJMFF034D17+ CGAGACATGGCCATTGCGTCGTGCCCAGCTCCACTCATCAGTACAGGCACATCATCGTCG
rJMFF040M09+ CGAGACATGGCCATTGCGTCGTGCCCAGCTCCACTCATCAGTACAGGCACATCATCGTCG
rJMFF015M07+ CGAGACATGGCCATTGCGTCGTGCCCAGCTCCACTCATCAGTACAGGCACATCATCGTCG
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consensus CGAGACATGGCCATTGCGTCGTGCCCAGCTCCACTCATCAGTACAGGCACATCATCGTCG

. : . : . : . : . : . :
rJMSF031G14+ GTTGTCTCCCCGGTAATTCTTGTAAAAGCGGTGTGTGCTGCAGATTTTAGCTGCGAACTC
rJMFF034D17+ GTTGTCTCCCCGGTAATTCTTGTAAAAGCGGTGTGTGCTGCAGATTTTAGCTGCGAACTC
rJMFF040M09+ GTTGTCTCCCCGGTAATTCTTGTAAAAGCGGTGTGTGCTGCAGATTTTAGCTGCGAACTC
rJMFF015M07+ GTTGTCTCCCCGGTAATTCTTGTAAAAGCGGTGTGTGCTGCAGATTTTAGCTGCGAACTC
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consensus GTTGTCTCCCCGGTAATTCTTGTAAAAGCGGTGTGTGCTGCAGATTTTAGCTGCGAACTC

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rJMSF031G14+ AGTTCGCGATCGCAAACCACTGCATTTGCATCGTGCTTGCGTTCAATGACACAAAAAATG
rJMFF034D17+ AGTTCGCGATCGCAAACCACTGCATTTGCATCGTGCTTGCGTTCAATGACACAAAAAATG
rJMFF040M09+ AGTTCGCGATCGCAAACCACTGCATTTGCATCGTGCTTGCGTTCAATGACACAAAAAATG
rJMFF015M07+ AGTTCGCGATCGCAAACCACTGCATTTGCATCGTGCTTGCGTTCAATGACACAAAAAATG
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consensus AGTTCGCGATCGCAAACCACTGCATTTGCATCGTGCTTGCGTTCAATGACACAAAAAATG

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rJMSF031G14+ TTGCGCTTGTCGCATAACTGATGCATGCGGTTCGAAAATTCATAGATGATAGCTTCTCGT
rJMFF034D17+ TTGCGCTTGTCGCATAACTGATGCATGCGATTCGAAAATTCATAGATGATAGCTTCTCGT
rJMFF040M09+ TTGCGCTTGTCGCATAACTGATGCATGCGGTTCGAAGATTCATAGATGATAGCTTCTCGT
rJMFF015M07+ TTGCGCTTGTCGCATAACTGATGCATGCGGTTCGAAGATTCATAGATGATAGCTTCTCGT
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consensus TTGCGCTTGTCGCATAACTGATGCATGCGGTTCGAAAATTCATAGATGATAGCTTCTCGT

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rJMSF031G14+ CCTGTATCATCCATTGCCCTTATGTCTACAGTGAATTTCACCTGGCCTGGTATGACGTTA
rJMFF034D17+ CCTGTATCATCCATTGCCCTTATGTCTACCNNGAATTTCACCTGGNCTGGTATGACGTTA
rJMFF040M09+ CCTGTATCATCCATTGCCCTTATGTCTACAGTGAATTTCACCTGGCCTGGTATGACGTTA
rJMFF015M07+ CCTGTATCATCCATTGCCCTTATGTCTACAGTGAATTTCACCTGGCCTGGTATGACGTTA
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consensus CCTGTATCATCCATTGCCCTTATGTCTACAGTGAATTTCACCTGGCCTGGTATGACGTTA

. : . : . : . : . : . :
rJMSF031G14+ CTTGCGCTTGGCCAGGTTGAAATTTCTCCAACAGTACAGACGAGAGACCCTGCAAGAGAT
rJMFF034D17+ CTTGCGCTTGGCCAGGTTGAAATTTCTCCAACAGTACAGACGAGAGACCCTGCAAGAGAT
rJMFF040M09+ CTTGCGCTTGGCCAGGTTGAAATTTCTCCAACAGTACAGACGAGAGACCCTGCAAGAGAT
rJMFF015M07+ CTTGCGCTTGGCCAGGTTGAAATTTCTCCAACAGTACAGACGAGAGACCCTGCAAGAG
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consensus CTTGCGCTTGGCCAGGTTGAAATTTCTCCAACAGTACAGACGAGAGACCCTGCAAGAGAT

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rJMSF031G14+ TTCACCGTTGATGTCTGGCATTCATCGTCATAGGAGAGATAATACTCGGGTTGTTTACAA
rJMFF034D17+ TTCACCGTTGATGTCT
rJMFF040M09+ TTCACCGTTGATGTCTGGCATTCATCGTCATAGGAGAGATAATACTCGGGTTGTTTACAA
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consensus TTCACCGTTGATGTCTGGCATTCATCGTCATAGGAGAGATAATACTCGGGTTGTTTACAA

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rJMSF031G14+ AGGTTTTCCAATAATACAATCA-GTTCAGCAGATGCAACCATAGGATCTTGGCGCATAGC
rJMFF040M09+ AGGNTTTCCAATAATACCATCAAGTTCAGCAGATGCAACCATAGGATCTTGGCGCATAG
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consensus AGGTTTTCCAATAATACAATCAAGTTCAGCAGATGCAACCATAGGATCTTGGCGCATAGC

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rJMSF031G14+ CATGGGTACCGTTCCTGCATGCCCTTGTGTGCCTCTCACCGTCACCTTTAACCTTGTCTG
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consensus CATGGGTACCGTTCCTGCATGCCCTTGTGTGCCTCTCACCGTCACCTTTAACCTTGTCTG

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rJMSF031G14+ TC
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consensus TC