Alignment Contig 14

                          .    :    .    :    .    :    .    :    .    :    .    :

JMFF004D16+ ATCTCATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC
JMFF032H02+ ATCTCATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC
JMFF028C06+ ATCTCATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC
JMFF047M05+ ATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC
JMFF011N23+ ATCTCATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC
JMFF043M14+ TCATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC
JMFF046I06+ ATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC
____________________________________________________________
consensus ATCTCATCAATACTATTTGCAGTGCTCCTTCATTTGCTCTTTCCCCAAAGCTTTTAGTAC

. : . : . : . : . : . :
JMFF004D16+ CTAAGCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG
JMFF032H02+ CTAAGCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG
JMFF028C06+ CTAAGCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG
JMFF047M05+ CTAAGCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG
JMFF011N23+ CTAANCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG
JMFF043M14+ CTAAGCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG
JMFF046I06+ CTAAGCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG
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consensus CTAAGCCCAATTCTCCCAATTTTTAGAAAGGACATAAAATAAACAAAACCAAACATCATG

. : . : . : . : . : . :
JMFF004D16+ TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA
JMFF032H02+ TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA
JMFF028C06+ TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA
JMFF047M05+ TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA
JMFF011N23+ TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA
JMFF043M14+ TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA
JMFF046I06+ TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA
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consensus TGTTCATCCGAGACTAAACTGCAGGCGGCTCCGAATGTTCTTCAACCCAACCGCAACAGA

. : . : . : . : . : . :
JMFF004D16+ GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC
JMFF032H02+ GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC
JMFF028C06+ GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC
JMFF047M05+ GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC
JMFF011N23+ GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC
JMFF043M14+ GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC
JMFF046I06+ GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC
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consensus GTCTCTCTGTTGGAGCGGCGCAGTTCCCTTAAAAAGCCCTCCTCCGCCGCGGTGCTGCCC

. : . : . : . : . : . :
JMFF004D16+ CTTCCGCCGCCGTCGCGGGCGGCGGCGTCATTGACCACCACTCCTCCGGCGTCTCCCAAG
JMFF032H02+ CTTCCGCCGCCGT
JMFF028C06+ CTTCCGCCGCCGTCGCGGGCGGCGGCGTCATTGACCACCACTCCTCCGGCGTCTCCCAAG
JMFF047M05+ CTTCCGCCGCCGTCGCGGGCGGCGGCGTCATTGACCACCACTCCTCCGGCGTCTCCCAAG
JMFF011N23+ CTTCCGCCGCCGTCGCGGGCGGCGGCGTCATTGACCACCACTCCTCCGGCGTCTCCCAAG
JMFF043M14+ CTTCCGCCGCCGTCGCGGGCGGCGGCGTCATTGACCACCACTCCTCCGGCGTCTCCCAAG
JMFF046I06+ CTTCCGCCGCCGTCGCGGGCGGCGGCGTCATTGACCACCACTCCTCCGGCGTCTCCCAAG
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consensus CTTCCGCCGCCGTCGCGGGCGGCGGCGTCATTGACCACCACTCCTCCGGCGTCTCCCAAG

. : . : . : . : . : . :
JMFF004D16+ ATAAAGTCGCCCAGACAGCCCGCAGTGAAGCGGTCAGGGAACGACCCCAATGGCCTCAAC
JMFF028C06+ ATAAAGTCGCCCAGACAGCCCGCAGTGAAGCGGTCAGGGAACGACCCCAATGGCCTCAAC
JMFF047M05+ ATAAAGTCGCCCAGACAGCCCGCAGTGAAGCGGTCAGGGAACGACCCCAATGGCCTCAAC
JMFF011N23+ ATAAAGTCGCCCAGACAGCCCGCAGTGAAGCGGTCAGGGAACGACCCCAATGGCCTCAAC
JMFF043M14+ ATAAAGTCGCCCAGACAGCCCGCAGTGAAGCGGTCAGGGAACGACCCCAATGGCCTCAAC
JMFF046I06+ ATAAAGTCGCCCAGACAGCCCGCAGTGAAGCGGTCAGGGAACGACCCCAATGGCCTCAAC
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consensus ATAAAGTCGCCCAGACAGCCCGCAGTGAAGCGGTCAGGGAACGACCCCAATGGCCTCAAC

. : . : . : . : . : . :
JMFF004D16+ TCTAGCGCCGAGAAGGNTTCCACTCCGAAGCCGTCGTCAGCAACCTTGTTGGCAAAGAAN
JMFF028C06+ TCTAGCGCCGAGAAGGTTTCCACTCCGAAGCCGTCGTCAGCAACCTTGTTGGCAAAGAAG
JMFF047M05+ TCTAGCGCCGAGAAGGTTTCCACTCCGAAGCCGTCGTCAGCAACCTTGTTGGCAAAGAAG
JMFF011N23+ TCTAGCGCCGAGAAGGTTTCCACTCCGAAGCCGTCGTCAGCAACCTTGTTGGCAAAGAAG
JMFF043M14+ TCTAGCGCCGAGAAGGTTTCCACTCCGAAGCCGTCGTCAGCAACCTTGTTGGCAAAGAAG
JMFF046I06+ TCTAGCGCCGAGAAGGTTTCCACTCCGAAGCCGTCGTCAGCAACCTTGTTGGCAAAGAAG
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consensus TCTAGCGCCGAGAAGGTTTCCACTCCGAAGCCGTCGTCAGCAACCTTGTTGGCAAAGAAG

. : . : . : . : . : . :
JMFF004D16+ TCCAAGAAAGGCGGCGGCGCC
JMFF028C06+ TCCAAGAAAGGCGGCGGCGCCGGTGCGCCGGCGGCGGCCGTGATGGTTGACGAGCCGGGA
JMFF047M05+ TCCAAGAAAGGCGGCGGCGCCGGTGCGCCGGCGGCGGCCGTGATGGTTGA
JMFF011N23+ TCCAAGAAAGGCGGCGGCGCCGGTGCGCCGGCGGCGGCCGTGATGGTTGACGAGCCGGGA
JMFF043M14+ TCCAAGAAAGGCGGCGGCGCCGGTGCGCCGGCGGCGGCCGTGATGGTTGACGAGCCGGGA
JMFF046I06+ TCCAAGAAAGGCGGCGGCGCCGGTGCGCCGGCGGCGGCCGTGATGGTTGACGAGCCGGGA
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consensus TCCAAGAAAGGCGGCGGCGCCGGTGCGCCGGCGGCGGCCGTGATGGTTGACGAGCCGGGA

. : . : . : . : . : . :
JMFF028C06+ AGCATAGCGGCGGCGAGGAG
JMFF011N23+ AGCATAGCGGCGGCGAGGAGGGAACAGGTCGCAATCATGCAGGTGCAGAGGAAAATGAAG
JMFF043M14+ AGCATAGCGGCGGCGAGGAGGGAACAGGTCGCAATCATGCAGGTGCAGAGGAAAATGAAG
JMFF046I06+ AGCATAGCGGCGGCGAGGAGGGAACAGGTCGCAATCATGC
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consensus AGCATAGCGGCGGCGAGGAGGGAACAGGTCGCAATCATGCAGGTGCAGAGGAAAATGAAG

. : . : . : . : . : . :
JMFF011N23+ ATTGCTCACTACGGAAGAACCAAATCCGCCAAGTATGAC
JMFF043M14+ ATTGCTCACTACGGAAGAACCAAATCCGCCAAGTATGACGGAAAGGTGGCTTCCGGCGAC
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consensus ATTGCTCACTACGGAAGAACCAAATCCGCCAAGTATGACGGAAAGGTGGCTTCCGGCGAC

. : . : . : . : . : . :
JMFF043M14+ TTCTCAGCCGCCCCCGCCGCCGCAACGGCGGTTGTCCGT
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consensus TTCTCAGCCGCCCCCGCCGCCGCAACGGCGGTTGTCCGT