Alignment Contig 13992

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF028A11+ TAAAAGTTGAATATGGGCCTAAAAGAACACATTGAGATCTCTACATCATTGTTATCTTTA
rJMSF033C10+ AAAAGTTGAATATGGGCCTAAAAGAACACATTGAGATCTCTACATCATTGTTATCTTTA
rJMSF038E09+ TTGAGATCTCTACATCATTGTTATCTTTA
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consensus TAAAAGTTGAATATGGGCCTAAAAGAACACATTGAGATCTCTACATCATTGTTATCTTTA

. : . : . : . : . : . :
rJMSF028A11+ TAGAAATTTAAATCCTACAAAGCATCAATCAATCTGCAGTAAGCTCTAGTGCTCTACATT
rJMSF033C10+ TAGAAATTTAAATCCTACAAAGCATCAATCAATCTGCAGTAAGCTCTAGTGCTCTACATT
rJMSF038E09+ TAGAAATTTAAATCCTACAAAGCATCAATCAATCTGCAGTAAGCTCTAGTGCTCTACATT
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consensus TAGAAATTTAAATCCTACAAAGCATCAATCAATCTGCAGTAAGCTCTAGTGCTCTACATT

. : . : . : . : . : . :
rJMSF028A11+ CCCTATCATGAAGACCTTGCTACCCCACAAGAACCCAAAAAAACCCAATGTTGAGGCGAC
rJMSF033C10+ CCCTATCATGAAGACCTTGCTACCCCACAAGAACCCAAAAAAACCCAATGTTGAGGCGAC
rJMSF038E09+ CCCTATCATGAAGACCTTGCTACCCCACAAGAACCCAAAAAAACCCAATGTTGAGGCGAC
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consensus CCCTATCATGAAGACCTTGCTACCCCACAAGAACCCAAAAAAACCCAATGTTGAGGCGAC

. : . : . : . : . : . :
rJMSF028A11+ AAAACCAATTAGGATTTCATCAGTTATCTGTCTAGCTAGGATATGGAACTGGACAGGAGA
rJMSF033C10+ AAAACCAATTAGGATTTCATCAGTTATCTGTCTAGCTAGGATATGGAACTGGACAGGAGA
rJMSF038E09+ AAAACCAATTAGGATTTCATCAGTTATCTGTCTAGCTAGGATATGGAACTGGACAGGAGA
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consensus AAAACCAATTAGGATTTCATCAGTTATCTGTCTAGCTAGGATATGGAACTGGACAGGAGA

. : . : . : . : . : . :
rJMSF028A11+ TGAATTAAGCTCAACCAAACATCATTTGAATATCATGTTAATTGAATTTGAATTTGCCTA
rJMSF033C10+ TGAATTAAGCTCAACCAAACATCATTTGAATATCATGTTAATTGAATTTGAATTTGCCTA
rJMSF038E09+ TGAATTAAGCTCAACCAAACATCATTTGAATATCATGTTAATTGAATTTGAATTTGCCTA
rJMFF028G01+ TTTGAATATCATGTTAATTGAATTTGAATTTGCCTA
rJMFF028E18+ TGTTAATTGAATTTGAATTTGCCTA
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consensus TGAATTAAGCTCAACCAAACATCATTTGAATATCATGTTAATTGAATTTGAATTTGCCTA

. : . : . : . : . : . :
rJMSF028A11+ AGACAGTAACTACCGCTCTGTTCTTTTTCTTCCAAGGTTTCTATCTGGCTATGTAGGTGG
rJMSF033C10+ AGACAGTAACTACCGCTCTGTTCTTTTTCTTCCAAGGTTTCTATCTGGCTATGTAGGTGG
rJMSF038E09+ AGACAGTAACTACCGCTCTGTTCTTTTTCTTCCAAGGTTTCTATCTGGCTATGTAGGTGG
rJMFF028G01+ AGACAGTAACTACCGCTCTGTTCTTTTTCTTCCAAGGTTTCTATCTGGCTATGTAGGTGG
rJMFF028E18+ AGACAGTAACTACCGCTCTGTTCTTTTTCTTCCAAGGTTTCTATCTGGCTATGTAGGTGG
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consensus AGACAGTAACTACCGCTCTGTTCTTTTTCTTCCAAGGTTTCTATCTGGCTATGTAGGTGG

. : . : . : . : . : . :
rJMSF028A11+ AAAGAATCTGTTGAGGTTAAACGGCAAAGTGTAGAATTCCTCGTTTCGATTGTCACCTCT
rJMSF033C10+ AAAGAATCTGTTGAGGTTAAACGGCAAAGTGTAGAATTCCTCGTTTCGATTGTCACCTCT
rJMSF038E09+ AAAGAATCTGTTGAGGTTAAACGGCAAAGTGTAGAATTCCTCGTTTCGATTGTCACCTCT
rJMFF028G01+ AAAGAATCTGTTGAGGTTAAACGGCAAAGTGTAGAATTCCTCGTTTCGATTGTCACCTCT
rJMFF028E18+ AAAGAATCTGTTGAGGTTAAACGGCAAAGTGTAGAATTCCTCGTTTCGATTGTCACCTCT
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consensus AAAGAATCTGTTGAGGTTAAACGGCAAAGTGTAGAATTCCTCGTTTCGATTGTCACCTCT

. : . : . : . : . : . :
rJMSF028A11+ GAATGTTCTGAACTTCACCCACCATGGCATCCCTCTGTCTTTCTTCGATTTTTCCACTTC
rJMSF033C10+ GAATGTTCTGAACTTCACCCACCATGGCATCCCTCTGTCTTTCTTCGATTTTTCCACTTC
rJMSF038E09+ GAATGTTCTGAACTTCACCCACCATGGCATCCCTCTGTCTTTCTTCGATTTTTCCACTTC
rJMFF028G01+ GAATGTTCTGAACTTCACCCACCATGGCATCCCTCTGTCTTTCTTCGATTTTTCCACTTC
rJMFF028E18+ GAATGTTCTGAACTTCACCCACCATGGCATCCCTCTGTCTTTCTTCGATTTTTCCACTTC
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consensus GAATGTTCTGAACTTCACCCACCATGGCATCCCTCTGTCTTTCTTCGATTTTTCCACTTC

. : . : . : . : . : . :
rJMSF028A11+ CAGCGTGTTGTCCAAGAACACCGCCACGATCAACCCCACTGTTGGCGGGGACGAGAATAT
rJMSF033C10+ CAGCGTGTTGTCCAAGAACACCGCCACGATCAACCCCACTGTTGGCGGGGACGAGAATAT
rJMSF038E09+ CAGCGTGTTGTCCAAGAACACCGCCACGATCAACCCCACTGTTGGCGGGGACGAGAATAT
rJMFF028G01+ CAGCGTGTTGTCCAAGAACACCGCCACGATCAACCCCACTGTTGGCGGGGACGAGAATAT
rJMFF028E18+ CAGCGTGTTGTCCAAGAACACCGCCACGATCAACCCCACTGTTGGCGGGGACGAGAATAT
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consensus CAGCGTGTTGTCCAAGAACACCGCCACGATCAACCCCACTGTTGGCGGGGACGAGAATAT

. : . : . : . : . : . :
rJMSF028A11+ CGTGTTGATGAATGCATTGAACCATCCGGCATTGGTGTGAACGAGGCCATGGCGACCTTG
rJMSF033C10+ CGTGTTGATGAATGCATTGAACCATCCGGCATTGGTGTGAACGAGGCCATGGCGACCTTG
rJMSF038E09+ CGTGTTGATGAATGCATTGAACCATCCGGCATTGGTGTGAACGAGGCCATGGCGACCTTG
rJMFF028G01+ CGTGTTGATGAATGCATTGAACCATCCGGCATTGGTGTGAACGAGGCCATGGCGACCTTG
rJMFF028E18+ CGTGTTGATGAATGCATTGAACCATCCGGCATTGGTGTGAACGAGGCCATGGCGACCTTG
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consensus CGTGTTGATGAATGCATTGAACCATCCGGCATTGGTGTGAACGAGGCCATGGCGACCTTG

. : . : . : . : . : . :
rJMSF028A11+ GGACCAGTATTCATTAAAGAACTGAGGAATCGAGATTCCTAGGAAGAGTGAAAGGCCCGT
rJMSF033C10+ GGACCAGTATTCATTAAAGAACTGAGGAATCGAGATTCCTAGGAAGAGTGAAAGGCCCGT
rJMSF038E09+ GGACCAGTATTCATTAAAGAACTGAGGAATCGAGATTCCTAGGAAGAGTGAAAGGCCCGT
rJMFF028G01+ GGACCAGTATTCATTAAAGAACTGAGGAATCGAGATTCCTAGGAAGAGTGAAAGGCCCGT
rJMFF028E18+ GGACCAGTATTCATTAAAGAACTGAGGAATCGAGATTCCTAGGAAGAGTGAAAGGCCCGT
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consensus GGACCAGTATTCATTAAAGAACTGAGGAATCGAGATTCCTAGGAAGAGTGAAAGGCCCGT

. : . : . : . : . : . :
rJMSF028A11+ GATGAGGAGATTGCGCATACAGTTCATGTTTGTGAACTGAAGAANCGACAAGCCTACAGA
rJMSF033C10+ GATGAGGAGATTGCGCATACAGTTCATGTTTGTGAACTGAAGAAACGACAAGCCTACAGA
rJMSF038E09+ GATGAGGAGATTGCGCATACAGTTCATGTTTGTGAACTGAAGAAACGACAAGCCTACAGA
rJMFF028G01+ GATGAGGAGATTGCGCATACAGTTCATGTTTGTGAACTGAAGAAACGACAAGCCTACAGA
rJMFF028E18+ GATGAGGAGATTGCGCATACAGTTCATGTTTGTGAACTGAAGAAACGACAAGCCTACAGA
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consensus GATGAGGAGATTGCGCATACAGTTCATGTTTGTGAACTGAAGAAACGACAAGCCTACAGA

. : . : . : . : . : . :
rJMSF028A11+ GCCTACAAGGCCAANCAGAACACAGTATAATGCAGCATATATCACGAAA
rJMSF033C10+ GC
rJMSF038E09+ GCCTACAAGGCCAAACAGAACACAGTATAATGCAGCATATATCACGAAAGGTATAGACGC
rJMFF028G01+ GCCTACAAGGCCAAACAGAACACAGTATAATGCAGCATATATCACGAAAGGTATAGACGC
rJMFF028E18+ GCCTACAAGGCCAAACAGAACACAGTATAATGCAGCATATATCACGAAAGGTATAGACGC
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consensus GCCTACAAGGCCAAACAGAACACAGTATAATGCAGCATATATCACGAAAGGTATAGACGC

. : . : . : . : . : . :
rJMSF038E09+ AAAAACAGCTCCAAATTTCCCTAACATCGAGAAGAATATCATGAAGCCTGCAGAAATCTG
rJMFF028G01+ AAAAACAGCTCCAAATTTCCCTAACATCGAGAAGAATATCATGAAGCCTGCAGAAATCTG
rJMFF028E18+ AAAAACAGCTCCAAATTTCCCTAACATCGAGAAGAATATCATGAAGCCTGCAGAAATCTG
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consensus AAAAACAGCTCCAAATTTCCCTAACATCGAGAAGAATATCATGAAGCCTGCAGAAATCTG

. : . : . : . : . : . :
rJMSF038E09+ AACAACTCTACGGCTTCCAACCCGAGTCAGTCCAAGGAGTCCCACATTTTCCACAGATAC
rJMFF028G01+ AACAACTCTACGGCTTCCAACCCGAGTCAGTCCAAGGAGTCCCACATTTTCCACAGATAC
rJMFF028E18+ AACAACTCTACGGCTTCCAACCCGAGTCAGTCCAAGGAGTCCCACATTTTCCACAGATAC
rJMFF037J21+ GAGTCCCACATTTTCCACAGATAC
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consensus AACAACTCTACGGCTTCCAACCCGAGTCAGTCCAAGGAGTCCCACATTTTCCACAGATAC

. : . : . : . : . : . :
rJMSF038E09+ AGTGGACCCAGTGCCC
rJMFF028G01+ AGTGGACCCAGTGCCCGTTCCAAAAAGACCATCAAGTAAAACACCTATTCCCTGCCNACC
rJMFF028E18+ AGTGGACCCAGTGCCC
rJMFF037J21+ AGTGGACCCAGTGCCCGTTCCAAAAAGACCATCAAGTAAAACACCTATTCCCTGCCAACC
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consensus AGTGGACCCAGTGCCCGTTCCAAAAAGACCATCAAGTAAAACACCTATTCCCTGCCAACC

. : . : . : . : . : . :
rJMFF028G01+ AATCCCCCGAC
rJMFF037J21+ AATCCCCCGACTAAGTACGTAGGCTGGAGGTGGAGTGGCAATTGCTANAC
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consensus AATCCCCCGACTAAGTACGTAGGCTGGAGGTGGAGTGGCAATTGCTANAC