Alignment Contig 13981

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF026B06+ ACGCAAAACATAATAATAACATGAAAACTCCCACAAAACGTAAAAGTTCGGCATACTATA
rJMSF031H18+ ATAACATGAAAACTCCCACAAAACGTAAAAGTTCGGCATACTATA
rJMSF040P05+ ATAACATGAAAACTCCCACAAAACGTAAAAGTTCGGCATACTATA
rJMSF019B14+ GGCATACTATA
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consensus ACGCAAAACATAATAATAACATGAAAACTCCCACAAAACGTAAAAGTTCGGCATACTATA

. : . : . : . : . : . :
rJMSF026B06+ CTCTCTACAAAGTATCAATAGGACTATTCTACAACAAGCTTCATTCTCAAGGCAAAAACT
rJMSF031H18+ CTCTCTACAAAGTATCAATAGGACTATTCTACAACAAGCTTCATTCTCAAGGCAAAAACT
rJMSF040P05+ CTCTCTACAAAGTATCAATAGGACTATTCTACAACAAGCTTCATTCTCAAGGCAAAAACT
rJMSF019B14+ CTCTCTACAAAGTATCAATAGGACTATTCTACAACAAGCTTCATTCTCAAGGCAAAAACT
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consensus CTCTCTACAAAGTATCAATAGGACTATTCTACAACAAGCTTCATTCTCAAGGCAAAAACT

. : . : . : . : . : . :
rJMSF026B06+ GTGCGAGCCAGTGGCGTTATGAACACATTTTTTTAAACCTCCGTTCCAGTAAAACGCAAG
rJMSF031H18+ GTGCGAGCCAGTGGCGTTATGAACACATTTTTTTAAACCTCCGTTCCAGTAAAACGCAAG
rJMSF040P05+ GTGCGAGCCAGTGGCGTTATGAACACATTTTTTTAAACCTCCGTTCCAGTAAAACGCAAG
rJMSF019B14+ GTGCGAGCCAGTGGCGTTATGAACACATTTTTTTAAACCTCCGTTCCAGTAAAACGCAAG
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consensus GTGCGAGCCAGTGGCGTTATGAACACATTTTTTTAAACCTCCGTTCCAGTAAAACGCAAG

. : . : . : . : . : . :
rJMSF026B06+ TCACCGACCGCGTGGGATGCGCAAAATACAAGAGATTGATTGATATGTACCGCTTTTTTT
rJMSF031H18+ TCACCGACCGCGTGGGATGCGCAAAATACAAGAGATTGATTGATATGTACCGCTTTTTTT
rJMSF040P05+ TCACCGACCGCGTGGGATGCGCAAAATACAAGAGATTGATTGATATGTACCGCTTTTTTT
rJMSF019B14+ TCACCGACCGCGTGGGATGCGCAAAATACAAGAGATTGATTGATATGTACCGCTTTTTTT
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consensus TCACCGACCGCGTGGGATGCGCAAAATACAAGAGATTGATTGATATGTACCGCTTTTTTT

. : . : . : . : . : . :
rJMSF026B06+ TTTTAACNCCCGGGGCANCGGGGTTGTNCCNCTAAAGCAAGNCCAACAGGGGNGGCNGCT
rJMSF031H18+ TTTTAACNCCCGGGGCANCGGGGTTGTTCCNCTAAAGCAAGNCCAACAGGGGNGGCNGCN
rJMSF040P05+ TTTTAACTCCCGGGGCAGCGGGGTTGTNCCNCTAAAGCAAGNCCAACNGGGGNGGCTGCT
rJMSF019B14+ TTTTAACNCCCGGGGCANCGGGGTTGTTCCACTAAAGCAAGTCCAACAGGGGNGGCTGCT
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consensus TTTTAACTCCCGGGGCAGCGGGGTTGTTCCACTAAAGCAAGTCCAACAGGGGNGGCTGCT

. : . : . : . : . : . :
rJMSF026B06+ CTGNCCAAGGCTTTGCTNGGCTAGGCCGNGATANTTGCCCTTGATTTCCTCGCCCTCGTC
rJMSF031H18+ CTGNCCAAGGCTTTGCTNGGCTAGGCCGNGANAGTTGCCCTTGATTTCCTCGCCCTCGTC
rJMSF040P05+ CTGNCCNAGGCTTTGCTNGGCTAGGCCGGGATAGTTGCCCTTGATTTCCTCGCCCTCGNC
rJMSF019B14+ CTGNCCAAGGCTTTGCTNGGCTAGGCCGNGATAGTTGCCCTTGATTTCCTCGCCCTCGTC
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consensus CTGNCCAAGGCTTTGCTNGGCTAGGCCGGGATAGTTGCCCTTGATTTCCTCGCCCTCGTC

. : . : . : . : . : . :
rJMSF026B06+ CCCTTCCTCTACCGATGGCAGTTGANGGGGGNGGAGCTAGCCTNGGNGCANTTNGCNCGG
rJMSF031H18+ CCCTTCCTCTACCGANGGCANTTGANGGGGGNGGAGCTAGCCTNGGNGCANTTTGCNCGG
rJMSF040P05+ CCCTTCCTCTACCGANGGCAGTTGANGGGGGNGGAGCTAGCCTNGGNGCANTTNGCNCGG
rJMSF019B14+ CCCTTCCTCTACCGATGGCAGTTGATGGGGGNGGAGCTAGCCTTGGNGCAGTTTGCTCGG
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consensus CCCTTCCTCTACCGATGGCAGTTGATGGGGGNGGAGCTAGCCTTGGNGCAGTTTGCTCGG

. : . : . : . : . : . :
rJMSF026B06+ TTTTGTTTGAGGANAAAANGGAACCAAAANCCANGGGTTTCGNAAAAAANCCTTGANTTT
rJMSF031H18+ TTTTGTTTGAGGANAAAANGGAACCAANANCCNNGGGTTNCGNAAAAAANCCTTGANTTN
rJMSF040P05+ TTTTGTTTGAGGANAAAANGGAACCAANANCCANGGGTTTCGNAAAAAANCCTTGAGTTN
rJMSF019B14+ TTTTGTTTGAGGANAAAANGGAACCAANATCCANGGGTTTCGNAAAAAANCCTTGANTTT
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consensus TTTTGTTTGAGGANAAAANGGAACCAAAATCCANGGGTTTCGNAAAAAANCCTTGAGTTT

. : . : . : . : . : . :
rJMSF026B06+ GTTTCANGTACCCAANAAAATTCNGGNAATTAACAGCCCCNCCACCGCTNAAACCACCNA
rJMSF031H18+ GTTTCANGTACCCAANAAAATTCNGGNAATTAACANCCCCACCACCGCTNAAACCACCNA
rJMSF040P05+ GTTTCANGTACCCAANAAAATTCNGGGAATTAACAGCCCCNCCNCCGCTNANACCNCCNA
rJMSF019B14+ GTTTCANGTANCCAANANAATTCNGGGAATTAACAGCCCCNCCACCGCTNAAACCNCCNA
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consensus GTTTCANGTACCCAANAAAATTCNGGGAATTAACAGCCCCACCACCGCTNAAACCACCNA

. : . : . : . : . : . :
rJMSF026B06+ AATTCANCGGGNAATTCCCTNGGTTCGGTTTCAAGGGCTCTGTAAACNTTGAGGNGCCAA
rJMSF031H18+ AATTCAGCGGGGANTTCCCTNGGTTCGGTTTCAAGGGCNCTGTAAACATTGAGG
rJMSF040P05+ AATTCANCGNGNAATTCCCTNGGTNCGGTTTCANGGGCTCNGTANACATTGAGGNGCCAA
rJMSF019B14+ AATTCANCGGGNAATTCCCTTGGTTCGGTTTCAAGGGCTCTGTAAACNTTGAGGNGCCAA
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consensus AATTCAGCGGGGAATTCCCTTGGTTCGGTTTCAAGGGCTCTGTAAACATTGAGGNGCCAA

. : . : . : . : . : . :
rJMSF026B06+ NAGACCATGAGGAAAAGGCTATCCAACGNATTAGNATTGCTTGTGCTGTTACTGGANCCA
rJMSF040P05+ NANACCATGAGGAAA-GGCTATCCAACGGATTAGNATNGCTNGGGCTGTTACNGGANCCA
rJMSF019B14+ NANACCATGAGGAAA-GGCTATCCAACGGATNAGGATTGCTTGTGCTGTTACTGGAACCA
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consensus NAGACCATGAGGAAA-GGCTATCCAACGGATTAGGATTGCTTGTGCTGTTACTGGAACCA

. : . : . : . : . : . :
rJMSF026B06+ TGCATGTTGAAAGGCNAGGCCNATGTGCCATTGT
rJMSF040P05+ NGCANGTTGAAAGGCNAGGCCAATGTGCCNTTGTTAAAAGGTTTA
rJMSF019B14+ TGCATGTTGAAAGGCGAGGCCNATGTGCCATTGTTAANAGGTTTANAAGCAACGGTAGAG
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consensus TGCATGTTGAAAGGCGAGGCCAATGTGCCATTGTTAAAAGGTTTANAAGCAACGGTAGAG