Alignment Contig 13976

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF025I10+ AAAATTGCTGAAAATCTTAACAAAAATAATTATACTATTGCAGCATCTTTTTGTCATCTA
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consensus AAAATTGCTGAAAATCTTAACAAAAATAATTATACTATTGCAGCATCTTTTTGTCATCTA

. : . : . : . : . : . :
rJMSF025I10+ TTTTCTTTAGTTGTGATTAAAGTAAAGAAGAAGCACCTTGGAGGAAGGATTCATAAATAA
rJMSF011I16+ AAGAAGAAGCACCTTGGAGGAAGGATTCATAAATAA
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consensus TTTTCTTTAGTTGTGATTAAAGTAAAGAAGAAGCACCTTGGAGGAAGGATTCATAAATAA

. : . : . : . : . : . :
rJMSF025I10+ TAAGGCTACCAAACAACAATTTCTATTCAATGTAACTGAAATTTTACCACATTGATGGCA
rJMSF011I16+ TAAGGCTACCAAACAACAATTTCTATTCAATGTAACTGAAATTTTACCACATTGATGGCA
rJMSF014D08+ ATGTAACTGAAATTTTACCACATTGATGGCA
rJMSF007M18+ ATGTAACTGAAATTTTACCACATTGATGGCA
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consensus TAAGGCTACCAAACAACAATTTCTATTCAATGTAACTGAAATTTTACCACATTGATGGCA

. : . : . : . : . : . :
rJMSF025I10+ CATAGACTTGTTCTTTCAGGTTCTGTGTGGCACTTTCAGTGGGAAAACCCCTTACAGCGC
rJMSF011I16+ CATAGACTTGTTCTTTCAGGTTCTGTGTGGCACTTTCAGTGGGAAAACCCCTTACAGCGC
rJMSF014D08+ CATAGACTTGTTCTTTCAGGTTCTGTGTGGCACTTTCAGTGGGAAAACCCCTTACAGCGC
rJMSF029A06+ GTTCTTTCAGGTTCTGTGTGGCACTTTCAGTGGGAAAACCCCTTACAGCGC
rJMSF007M18+ CATAGACTTGTTCTTTCAGGTTCTGTGTGGCACTTTCAGTGGGAAAACCCCTTACAGCGC
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consensus CATAGACTTGTTCTTTCAGGTTCTGTGTGGCACTTTCAGTGGGAAAACCCCTTACAGCGC

. : . : . : . : . : . :
rJMSF025I10+ CAATCGTCCACTGGGATATTATCCCTGCAGAAATAGCAAATCGAAGTTGCCTCTCCAAAA
rJMSF011I16+ CAATCGTCCACTGGGATATTATCCCTGCAGAAATAGCAAATCGAAGTTGCCTCTCCAAAA
rJMSF014D08+ CAATCGTCCACTGGGATATTATCCCTGCAGAAATAGCAAATCGAAGTTGCCTCTCCAAAA
rJMSF029A06+ CAATCGTCCACTGGGATATTATCCCTGCAGAAATAGCAAATCGAAGTTGCCTCTCCAAAA
rJMSF007M18+ CAATCGTCCACTGGGATATTATCCCTGCAGAAATAGCAAATCGAAGTTGCCTCTCCAAAA
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consensus CAATCGTCCACTGGGATATTATCCCTGCAGAAATAGCAAATCGAAGTTGCCTCTCCAAAA

. : . : . : . : . : . :
rJMSF025I10+ CATCTTGGTTCTCGAACATCTCTGGCTGAGTCGTGAGTTTTCTCATGATTCCCGCAACAA
rJMSF011I16+ CATCTTGGTTCTCGAACATCTCTGGCTGAGTCGTGAGTTTTCTCATGATTCCCGCAACAA
rJMSF014D08+ CATCTTGGTTCTCGAACATCTCTGGCTGAGTCGTGAGTTTTCTCATGATTCCCGCAACAA
rJMSF029A06+ CATCTTGGTTCTCGAACATCTCTGGCTGAGTCGTGAGTTTTCTCATGATTCCCGCAACAA
rJMSF007M18+ CATCTTGGTTCTCGAACATCTCTGGCTGAGTCGTGAGTTTTCTCATGATTCCCGCAACAA
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consensus CATCTTGGTTCTCGAACATCTCTGGCTGAGTCGTGAGTTTTCTCATGATTCCCGCAACAA

. : . : . : . : . : . :
rJMSF025I10+ CAGCATCCCCAGAACCGGTTCTGTCACACGTGAATGGCGTTATAAGTACATCTTCAGTCC
rJMSF011I16+ CAGCATCCCCAGAACCGGTTCTGTCACACGTGAATGGCGTTATAAGTACATCTTCAGTCC
rJMSF014D08+ CAGCATCCCCAGAACCGGTTCTGTCACACGTGAATGGCGTTATAAGTACATCTTCAGTCC
rJMSF029A06+ CAGCATCCCCAGAACCGGTTCTGTCACACGTGAATGGCGTTATAAGTACATCTTCAGTCC
rJMSF007M18+ CAGCATCCCCAGAACCGGTTCTGTCACACGTGAATGGCGTTATAAGTACATCTTCAGTCC
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consensus CAGCATCCCCAGAACCGGTTCTGTCACACGTGAATGGCGTTATAAGTACATCTTCAGTCC

. : . : . : . : . : . :
rJMSF025I10+ CGACTACAACCCCCTCAAAAGACGGGGTGTAATAATGAAGCCGAAGGGTTCCATCCGTCA
rJMSF011I16+ CGACTACAACCCCCTCAAAAGACGGGGTGTAATAATGAAGCCGAAGGGTTCCATCCGTCA
rJMSF014D08+ CGACTACAACCCCCTCAAAAGACGGGGTGTAATAATGAAGCCGAAGGGTTCCATCCGTCA
rJMSF029A06+ CGACTACAACCCCCTCAAAAGACGGGGTGTAATAATGAAGCCGAAGGGTTCCATCCGTCA
rJMSF007M18+ CGACTACAACCCCCTCAAAAGACGGGGTGTAATAATGAAGCCGAAGGGTTCCATCCGTCA
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consensus CGACTACAACCCCCTCAAAAGACGGGGTGTAATAATGAAGCCGAAGGGTTCCATCCGTCA

. : . : . : . : . : . :
rJMSF025I10+ CGAACAAAAACTTCAAACGATCATGCCATAATGGAGCTACTTCTTCCCGGCTATAGTGGT
rJMSF011I16+ CGAACAAAAACTTCAAACGATCATGCCATAATGGAGCTACTTCTTCCCGGCTATAGTGGT
rJMSF014D08+ CGAACAAAAACTTCAAACGATCATGCCATAATGGAGCTACTTCTTCCCGGCTATAGTGGT
rJMSF029A06+ CGAACAAAAACTTCAAACGATCATGCCATAATGGAGCTACTTCTTCCCGGCTA--GTGGT
rJMSF007M18+ CGAACAAAAACTTCAAACGATCATGCCATAATGGAGCTACTTCTTCCCGGCTATAGTGGT
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consensus CGAACAAAAACTTCAAACGATCATGCCATAATGGAGCTACTTCTTCCCGGCTATAGTGGT

. : . : . : . : . : . :
rJMSF025I10+ AATAGTTTCTTATCTTCCTGGTTTGCTGAAAATCCTCAGCAAAGTATTGAGGTTTATAGT
rJMSF011I16+ AATAGTTTCTTATCTTCCTGGTTTGCTGAAAATCCTCAGCAAAGTATTGAGGTTTATAGT
rJMSF014D08+ AATAGTTTCTTATCTTCCTGGTTTGCTGAAAATCCTCAGCAAAGTATTGAGGTTTATAGT
rJMSF029A06+ AATAGTTTCTTATCTTCCTGGTTTGCTGAAAATCCTCAGCAAAGTATTGAGGTTTATAGT
rJMSF007M18+ AATAGTTTCTTATCTTCCTGGTTTGCTGAAAATCCTCAGCAAAGTATTGAGGTTTATAGT
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consensus AATAGTTTCTTATCTTCCTGGTTTGCTGAAAATCCTCAGCAAAGTATTGAGGTTTATAGT

. : . : . : . : . : . :
rJMSF025I10+ TTCTTTTATGTTCATAATGATCTTCGTCAAGAAGAAATTCTAGCTCGCTCCTTGAAACTT
rJMSF011I16+ TTCTTTTATGTTCATAATGATCTTCGTCAAGAAGAAATTCTAGCTCGCTCCTTGAAACTT
rJMSF014D08+ TTCTTTTATGTTCATAATGATCTTCGTCAAGAAGAAATTCTAGCTCGCTCCTTGAAACTT
rJMSF029A06+ TTCTTTTATGTTCATAATGATCTTCGTCAAGAAGAAATTCTAGCTCGCTCCTTGAAACTT
rJMSF007M18+ TTCTTTTATGTTCATAATGATCTTCGTCAAGAAGAAATTCTAGCTCGCTCCTTGAAACTT
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consensus TTCTTTTATGTTCATAATGATCTTCGTCAAGAAGAAATTCTAGCTCGCTCCTTGAAACTT

. : . : . : . : . : . :
rJMSF025I10+ CAATGATATCTGCTTGCTCCCAGGCTCCCTTGATCACTTCCCAAGTCTCATCCCGCGATT
rJMSF011I16+ CAATGATATCTGCTTGCTCCCAGGCTCCCTTGATCACTTCCCAAGTCTCATCCCGCGATT
rJMSF014D08+ CAATGATATCTGCTTGCTCCCAGGCTCCCTTGATCACTTCCCAAGTCTCATCCCGCGATT
rJMSF029A06+ CAATGATATCTGCTTGCTCCCAGGCTCCCTTGATCACTTCCCAAGTCTCATCCCGCGATT
rJMSF007M18+ CAATGATATCTGCTTGCTCCCAGGCTCCCTTGATCACTTCCCAAGTCTCATCCCGCGATT
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consensus CAATGATATCTGCTTGCTCCCAGGCTCCCTTGATCACTTCCCAAGTCTCATCCCGCGATT

. : . : . : . : . : . :
rJMSF025I10+ TCCACAAAGGCAGTGGCAGATTCAA
rJMSF011I16+ TCCACAAAGGCAGTGGCAGATTCAAATCAAAGAATATAAGGCCACCAAACTTTTTTGACC
rJMSF014D08+ TCCACAAAGGCAGTGGCAGATTCAAATCAAAGAATATAAGGCCACCAAACTTTTTTGACC
rJMSF029A06+ TCCACAAAGGCAGTGGCAGATTCAAATCAAAGAATATAAGGCCACCAAACTTTTTTGACC
rJMSF007M18+ TCCACAAAGGCAGTGGCAGATTCAAATCAAAGAATATAAGGCCACCAAACTTTTTTGACC
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consensus TCCACAAAGGCAGTGGCAGATTCAAATCAAAGAATATAAGGCCACCAAACTTTTTTGACC

. : . : . : . : . : . :
rJMSF011I16+ ATGAAATTGCTTTGAAAAGGGTGGAATGCATAGTGGGAGATGTTAGGACTTCTGA
rJMSF014D08+ ATGAAATTGCTTTGAAAAGGGTGGAATGCATAGTGGGAGATGTTAGGACTTCTGAATTAA
rJMSF029A06+ ATGAAATTGCTTTGAAAAGGGTGGAATGCATAGTGGGAGATGTTAGGACTTCTGAATTAA
rJMSF007M18+ ATGAAATTGCTTTGAAAAGGGTGGAATGCATAGTGGGAGATGTTAGGACTTCTGAATTAA
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consensus ATGAAATTGCTTTGAAAAGGGTGGAATGCATAGTGGGAGATGTTAGGACTTCTGAATTAA

. : . : . : . : . : . :
rJMSF014D08+ AATGGAAAA-TTCTAGCCTCTTTGAGCACAGCAAGATTCAATTCAGA
rJMSF029A06+ AATGGAAAA-TTCTAGCCTCTTTGAGCACAGCA
rJMSF007M18+ AATGGAAAAATTCTAGCCTCTTTGAGCACAGCA
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consensus AATGGAAAA-TTCTAGCCTCTTTGAGCACAGCAAGATTCAATTCAGA