Alignment Contig 13889

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF007M02+ CTCACGGGAACCAATATTTATTTACAATCAATATCACCATTAGCTTCCATTTTGGGACCC
rJMSF020F21+ CAATATTTATTTACAATCAATATCACCATTAGCTTCCATTTTGGGACCC
____________________________________________________________
consensus CTCACGGGAACCAATATTTATTTACAATCAATATCACCATTAGCTTCCATTTTGGGACCC

. : . : . : . : . : . :
rJMSF007M02+ CTGGTACATTATGCTTCCAAGGGTAATGAAGCCCCTAATGCTTATCCATGAACTAAAAAG
rJMSF020F21+ CTGGTACATTATGCTTCCAAGGGTAATGAAGCCCCTAATGCTTATCCATGAACTAAAAAG
rJMSF043D22+ AGGGTAATGAAGCCCCTAATGCTTATCCATGAACTAAAAAG
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consensus CTGGTACATTATGCTTCCAAGGGTAATGAAGCCCCTAATGCTTATCCATGAACTAAAAAG

. : . : . : . : . : . :
rJMSF007M02+ ATGCAGAAACCATTGATATAAACTTAAATGAAAATTTTCTGACTGTAAAAGAATCTACAT
rJMSF020F21+ ATGCAGAAACCATTGATATAAACTTAAATGAAAATTTTCTGACTGTAAAAGAATCTACAT
rJMSF043D22+ ATGCAGAAACCATTGATATAAACTTAAATGAAAATTTTCTGACTGTAAAAGAATCTACAT
rJMSF021A22+ AAAGAATCTACAT
rJMSF007A22+ AAAGAATCTACAT
____________________________________________________________
consensus ATGCAGAAACCATTGATATAAACTTAAATGAAAATTTTCTGACTGTAAAAGAATCTACAT

. : . : . : . : . : . :
rJMSF007M02+ TTCTTAATAGTGCCCGCGATCTATCACGTTAGGATAAGCGAAAGAAGTTATCATAAGCTC
rJMSF020F21+ TTCTTAATAGTGCCCGCGATATATCACGTTAGGATAAGCGAAAGAAGTTATCATAAGCTC
rJMSF043D22+ TTCTTAATAGTGCCCGCGATCTATCACGTTAGGATAAGCGAAAGAAGTTATCATAAGCTC
rJMSF021A22+ TTCTTAATAGTGCCCGCGATCTATCACGTTAGGATAAGCGAAAGAAGTTATCATAAGCTC
rJMSF007A22+ TTCTTAATAGTGCCCGCGATCTATCACGTTAGGATAAGCGAAAGAAGTTATCATAAGCTC
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consensus TTCTTAATAGTGCCCGCGATCTATCACGTTAGGATAAGCGAAAGAAGTTATCATAAGCTC

. : . : . : . : . : . :
rJMSF007M02+ CCGTGTAGTTCACTGAGAAGGAGGTCACCACTTTTATCGTCGTTGTTATCCAGGAATGAG
rJMSF020F21+ CCGTGTAGTTCACTGAGAAGGAGGTCACCACTTTTATCGTCGTTGTTATCCAGGAATGAG
rJMSF043D22+ CCGTGTAGTTCACTGAGAAGGAGGTCACCACTTTTATCGTCGTTGTTATCCAGGAATGAG
rJMSF021A22+ CCGTGTAGTTCACTGAGAAGGAGGTCACCACTTTTATCGTCGTTGTTATCCAGGAATGAG
rJMSF007A22+ CCGTGTAGTTCACTGAGAAGGAGGTCACCACTTTTATCGTCGTTGTTATCCAGGAATGAG
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consensus CCGTGTAGTTCACTGAGAAGGAGGTCACCACTTTTATCGTCGTTGTTATCCAGGAATGAG

. : . : . : . : . : . :
rJMSF007M02+ TCTTCCTCCCATGTGTCGGGTTCGTTGTTAGTATTCGAGCCATTGGGTGTCGGGATTTGA
rJMSF020F21+ TCTTCCTCCCATGTGTCGGGTTCGTTGTTAGTATTCGAGCCATTGGGTGTCGGGATTTGA
rJMSF043D22+ TCTTCCTCCCATGTGTCGGGTTCGTTGTTAGTATTCGAGCCATTGGGTGTCGGGATTTGA
rJMSF021A22+ TCTTCCTCCCATGTGTCGGGTTCGTTGTTAGTATTCGAGCCATTGGGTGTCGGGATTTGA
rJMSF007A22+ TCTTCCTCCCATGTGTCGGGTTCGTTGTTAGTATTCGAGCCATTGGGTGTCGGGATTTGA
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consensus TCTTCCTCCCATGTGTCGGGTTCGTTGTTAGTATTCGAGCCATTGGGTGTCGGGATTTGA

. : . : . : . : . : . :
rJMSF007M02+ GACACATAGTCCTCGGGATGAAGACACCCGGCTTGCTTCAACACCTCGATCAGTAGCTCC
rJMSF020F21+ GACACATAGTCCTCGGGATGAAGACACCCGGCTTGCTTCAACACCTCGATCAGTAGCTCC
rJMSF043D22+ GACACATAGTCCTCGGGATGAAGACACCCGGCTTGCTTCAACACCTCGATCAGTAGCTCC
rJMSF021A22+ GACACATAGTCCTCGGGATGAAGACACCCGGCTTGCTTCAACACCTCGATCAGTAGCTCC
rJMSF007A22+ GACACATAGTCCTCGGGATGAAGACACCCGGCTTGCTTCAACACCTCGATCAGTAGCTCC
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consensus GACACATAGTCCTCGGGATGAAGACACCCGGCTTGCTTCAACACCTCGATCAGTAGCTCC

. : . : . : . : . : . :
rJMSF007M02+ TTGCTTTCCGTATCGTCTTCTACCTCACAAAGCTTGAAAAAAGACGATATAGTTGCGGGC
rJMSF020F21+ TTGCTTTCCGTATCGTCTTCTACCTCACAAAGCTTGAAAAAAGACGATATAGTTGCGGGC
rJMSF043D22+ TTGCTTTCCGTATCGTCTTCTACCTCACAAAGCTTGAAAAAAGACGATATAGTTGCGGGC
rJMSF021A22+ TTGCTTTCCGTATCGTCTTCTACCTCACAAAGCTTGAAAAAAGACGATATAGTTGCGGGC
rJMSF007A22+ TTGCTTTCCGTATCGTCTTCTACCTCACAAAGCTTGAAAAAAGACGATATAGTTGCGGGC
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consensus TTGCTTTCCGTATCGTCTTCTACCTCACAAAGCTTGAAAAAAGACGATATAGTTGCGGGC

. : . : . : . : . : . :
rJMSF007M02+ CATGGTCTCCAGTTTTTAGATCCCTCGGCTGAACCGGCCTCCTTCAAGCAGGATAAAGCC
rJMSF020F21+ CATGGTCTCCAGTTTTTAGATCCCTCGGCTGAACCGGCCTCCTTCAAGCAGGATAAAGCC
rJMSF043D22+ CATGGTCTCCAGTTTTTAGATCCCTCGGCTGAACCGGCCTCCTTCAAGCAGGATAAAGCC
rJMSF021A22+ CATGGTCTCCAGTTTTTAGATCCCTCGGCTGAACCGGCCTCCTTCAAGCAGGATAAAGCC
rJMSF007A22+ CATGGTCTCCAGTTTTTAGATCCCTCGGCTGAACCGGCCTCCTTCAAGCAGGATAAAGCC
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consensus CATGGTCTCCAGTTTTTAGATCCCTCGGCTGAACCGGCCTCCTTCAAGCAGGATAAAGCC

. : . : . : . : . : . :
rJMSF007M02+ TCGGAGATTCTCCGCTCTTTGATATGCCCATCGGCGAGAATCTCCCATGTCTTCGGGTTC
rJMSF020F21+ TCGGAGATTCTCCGCTCTTTGATATGCCCATCGGCGAGAATCTCCCATGTCTTCGGGTTC
rJMSF043D22+ TCGGAGATTCTCCGCTCTTTGATATGCCCATCGGCGAGAATCTCCCATGTCTTCGGGTTC
rJMSF021A22+ TCGGAGATTCTCCGCTCTTTGATATGCCCATCGGCGAGAATCTCCCATGTCTTCGGGTTC
rJMSF007A22+ TCGGAGATTCTCCGCTCTTTGATATGCCCATCGGCGAGAATCTCCCATGTCTTCGGGTTC
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consensus TCGGAGATTCTCCGCTCTTTGATATGCCCATCGGCGAGAATCTCCCATGTCTTCGGGTTC

. : . : . : . : . : . :
rJMSF007M02+ GGCTTTACCCCGGCGTCTATTATTTGGGCTAAGAACCCTTCGGCCCTCTCGAATTGCCCC
rJMSF020F21+ GGCTTTACCCCGGCGTCTATTATTTGGGCTAAGAACCCTTCGGCCCTCTCGAATTGCCCC
rJMSF043D22+ GGCTTTACCCCGGCGTCTATTATTTGGGCTAAGAACCCTTCGGCCCTCTCGAATTGCCCC
rJMSF021A22+ GGCTTTACCCCGGCGTCTATTATTTGGGCTAAGAACCCTTCGGCCCTCTCGAATTGCCCC
rJMSF007A22+ GGCTTTACCCCGGCGTCTATTATTTGGGCTAAGAACCCTTCGGCCCTCTCGAATTGCCCC
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consensus GGCTTTACCCCGGCGTCTATTATTTGGGCTAAGAACCCTTCGGCCCTCTCGAATTGCCCC

. : . : . : . : . : . :
rJMSF007M02+ TTCCTCACATAGCAAACCAGCAGAA
rJMSF020F21+ TTCCTCACATAGCAAACCAGCAGAAGATTCGCCACTCGGGGATCATATCTCGACTTTGCT
rJMSF043D22+ TTCCTCACATAGCAAACCAGCAGAAGATTCGCCACTCGGGGATCATATCTCGACTTTGCT
rJMSF021A22+ TTCCTCACATAGCAAACCAGCAGAAGATTCGCCACTCGGGGATCATATCTCGACTTTGCT
rJMSF007A22+ TTCCTCACATAGCAAACCAGCAGAAGATTCGCCACTCGGGGATCATATCTCGACTTTGCT
____________________________________________________________
consensus TTCCTCACATAGCAAACCAGCAGAAGATTCGCCACTCGGGGATCATATCTCGACTTTGCT

. : . : . : . : . : . :
rJMSF020F21+ GACAACCATTCGTCGAATATGTTCTCCGCATCTTCAACATCGTCCAATCTCAGCAAAGAC
rJMSF043D22+ GACAACCATTCGTCGAATATGTTCTCCGCATCTTCAACATCGTCCAATCTCAGCAAAGAC
rJMSF021A22+ GACAACCATTCGTCGAATATGTTCTCCGCATCTTCAACATCGTCCAATCTCAGCAAAGAC
rJMSF007A22+ GACAACCATTCGTCGAATATGTTCTCCGCATCTTCAACATCGTCCAATCTCAGCAAAGAC
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consensus GACAACCATTCGTCGAATATGTTCTCCGCATCTTCAACATCGTCCAATCTCAGCAAAGAC

. : . : . : . : . : . :
rJMSF020F21+ GCGAT
rJMSF043D22+ GCGAT
rJMSF021A22+ GCGATTATTGAATGGTAGCTCGAGTTTGGAATGAAGGGGAAATTCGACTTGTAGACATTC
rJMSF007A22+ GCGATTATTGAATGGTAGCTCGAGTTTGGAATGAAGGGGAAATTCGACTTGTAGACATTC
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consensus GCGATTATTGAATGGTAGCTCGAGTTTGGAATGAAGGGGAAATTCGACTTGTAGACATTC

. : . : . : . : . : . :
rJMSF021A22+ CATATCCGGAATACCTCCTCCTTGTTACCAACACCGGCA
rJMSF007A22+ CATATCCGGAATACCTCCTCCTTGTTACCAACACCGGCAT
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consensus CATATCCGGAATACCTCCTCCTTGTTACCAACACCGGCAT