Alignment Contig 13876

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMSF002L04+ AATTATTACTTGGGAAGGCACGAAATTTGTTGGTGTATTTTTCTTCTAGCATTGACACAA
rJMFF036F17+ ACGAAATTTGTTGGTGTATTTTTCTTCTAGCATTGACACAA
rJMFF001A09+ ACGAAATTTGTTGGTGTATTTTTCTTCTAGCATTGACACAA
rJMSF038P18+ GTTGGTGTATTTTTCTTCTAGCATTGACACAA
rJMSF017I15+ TTTGTTGGTGTATTTTTCTTCTAGCATTGACACAA
rJMSF027E01+ AATTTGTTGGTGTATTTTTCTTCTAGCATTGACACAA
rJMSF028B22+ ATTTGTTGGTGTATTTTTCTTCTAGCATTGACACAA
____________________________________________________________
consensus AATTATTACTTGGGAAGGCACGAAATTTGTTGGTGTATTTTTCTTCTAGCATTGACACAA

. : . : . : . : . : . :
rJMSF002L04+ AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
rJMFF036F17+ AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
rJMFF001A09+ AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
rJMSF038P18+ AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
JMFN040K19- TTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
rJMSF017I15+ AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
rJMSF027E01+ AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
rJMSF028B22+ AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG
____________________________________________________________
consensus AGTTGGCCAGAAGACACAACACCACAAACTAGCAAGAACAGATACAATGCAAACCAGATG

. : . : . : . : . : . :
rJMSF002L04+ TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
rJMFF036F17+ TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
rJMFF001A09+ TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
rJMSF038P18+ TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
JMFN040K19- TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
rJMSF017I15+ TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
rJMSF027E01+ TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
rJMSF028B22+ TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG
____________________________________________________________
consensus TTGTTAATGTTCCAAACACACGTCTTATTGTTTGCCAGCCCAATAATCCTGCAAATGAGG

. : . : . : . : . : . :
rJMSF002L04+ AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
rJMFF036F17+ AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
JMFS125B05- GACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
rJMFF001A09+ AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
rJMSF038P18+ AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
JMFN040K19- AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
rJMSF017I15+ AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
rJMSF027E01+ AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
rJMSF028B22+ AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA
____________________________________________________________
consensus AGCTACGAAATGACTAACCAGCTTTGGAGCATTAGCGGAAATATCCATAGAGTTCCAAGA

. : . : . : . : . : . :
rJMSF002L04+ CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
rJMFF036F17+ CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
JMFS125B05- CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
rJMFF001A09+ CGCAGATGCAGCAGTTCCACGGGTTCATCCCGTCTGTGCCAGGACCCGTCATCACGATTC
rJMSF038P18+ CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
JMFN040K19- CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
rJMSF017I15+ CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
rJMSF027E01+ CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
rJMSF028B22+ CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC
____________________________________________________________
consensus CGCAGATGCAGCAGTTCCACGGGTTCATCTCGTCTGTGCCAGGACCCGTCATCACGATTC

. : . : . : . : . : . :
rJMSF002L04+ GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
rJMFF036F17+ GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
JMFS125B05- GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
rJMFF001A09+ GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
rJMSF038P18+ GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
JMFN040K19- GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
rJMSF016E06+ AAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATANGCCATGACGCGAACTGTC
rJMSF017I15+ GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
rJMSF027E01+ GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
rJMSF028B22+ GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC
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consensus GGAAAAATCTGAAAGGGAGCAGAGGGTTCGGGCCAGTAATAGGCCATGACGCGAACTGTC

. : . : . : . : . : . :
rJMSF002L04+ CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
rJMFF036F17+ CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
JMFS125B05- CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
rJMFF001A09+ CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
rJMSF038P18+ CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
JMFN040K19- CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
rJMSF016E06+ CTGGCTTGCANATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
rJMSF017I15+ CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
rJMSF027E01+ CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
rJMSF028B22+ CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT
____________________________________________________________
consensus CTGGCTTGCAAATTGTCTGGTCATCCTTGTGCACTCTCAAGTTCGTCCAATTCACGCCAT

. : . : . : . : . : . :
rJMSF002L04+ CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
rJMFF036F17+ CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
JMFS125B05- CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
rJMFF001A09+ CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
rJMSF038P18+ CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
JMFN040K19- CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
rJMSF016E06+ CTGTANATCCCTGANAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
rJMSF017I15+ CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
rJMSF027E01+ CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
rJMSF028B22+ CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG
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consensus CTGTAGATCCCTGAAAATTCCAGCTTCTCATGAAGGCCCTCGATCCATCCTGCCGTATTG

. : . : . : . : . : . :
rJMSF002L04+ TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
rJMFF036F17+ TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
JMFS125B05- TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
rJMFF001A09+ TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
rJMSF038P18+ TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
JMFN040K19- TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
rJMSF016E06+ TGTAATAGTTGCACATGAGCTGGTGATCATANCCNAGATCAATCNTCCACNATGAACTGA
rJMSF017I15+ TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
rJMSF027E01+ TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
rJMSF028B22+ TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA
____________________________________________________________
consensus TGTAATAGTTGCACATGAGCTGGTGATCATAACCGAGATCAATCATCCACCATGAACTGA

. : . : . : . : . : . :
rJMSF002L04+ TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
rJMFF036F17+ TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
JMFS125B05- TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
rJMFF001A09+ TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
rJMSF038P18+ TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
JMFN040K19- TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
rJMSF016E06+ TGTTTCCATCTTCANCTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
rJMSF017I15+ TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
rJMSF027E01+ TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
rJMSF028B22+ TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA
____________________________________________________________
consensus TGTTTCCATCTTCAACTTGAGGTCCGGCAAAAGATGTACCCTGAAAGTTCCTCGAGACGA

. : . : . : . : . : . :
rJMSF002L04+ GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
rJMFF036F17+ GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
JMFS125B05- GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
rJMFF001A09+ GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGNTACTCTCTTAG
rJMSF038P18+ GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
JMFN040K19- GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
rJMSF016E06+ GGACCTTA
rJMSF017I15+ GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
rJMSF027E01+ GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
rJMSF028B22+ GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG
____________________________________________________________
consensus GGACCTTAGGATCAGTAAATCTTGAAAAGGGACTGCTTGCTGTAACGGCTACTCTCTTAG

. : . : . : . : . : . :
rJMSF002L04+ ACAGAACGGGGTTTACCCACTGGTGTGCACCATAAGATGTGCCCGCAAAATAAAGAACTC
rJMFF036F17+ ACAGAACGGGGTTTACCCACTGGTGTGCACCATAAGATGTGCCCGCAAAATAAAGAACTC
JMFS125B05- ACAGAACGGGGTTTACCCAATGGAGTTCTTTATTTTGCGGGCACATCTTATGGTGCACAC
rJMFF001A09+ ACAGAACGGGG
rJMSF038P18+ ACAGAACGGGGTTTACCCACTGGTGTGCACCATAAGATGTGCCCGCAAAATAAAGAACTC
JMFN040K19- ACAGAATGGGGTTTACCCACTGGTGTGCAC
rJMSF017I15+ ACAGAACGGGGTTTACCCACTGGTGTGCACCATAAGATGTGCCCGCAAAATAAAGAACTC
rJMSF027E01+ ACAGAACGGGGTTTACCCACTGGTGTGCACCATAAGATGTGCCCGCAAAATAAAGAACTC
rJMSF028B22+ ACAGAACGGGGTTTACCCACTGGTGTGCACCATAAGATGTGCCCGC
____________________________________________________________
consensus ACAGAACGGGGTTTACCCACTGGTGTGCACCATAAGATGTGCCCGCAAAATAAAGAACTC

. : . : . : . : . : . :
rJMSF002L04+ CATTG
rJMFF036F17+ CATTGCTGTCCCCATCGCATATGTAT
JMFS125B05- CAGTGGGTAAACCCCGTGCTGT
rJMSF038P18+ CATTG
rJMSF017I15+ CATTG
rJMSF027E01+ CATTGCTGTCCCCATCGCATATGTATTGG
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consensus CATTGCTGTCCCCATCGCATATGTATTGG