Alignment Contig 13810

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF043M14+ CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTAACAAAACAAACCACTTAT
____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTTTTAACAAAACAAACCACTTAT

. : . : . : . : . : . :
rJMFF043M14+ TTATATAGAACATCATCCAAAACATTACAATCCCCAACCAAAAAAAAGAAGATGGGAAAT
____________________________________________________________
consensus TTATATAGAACATCATCCAAAACATTACAATCCCCAACCAAAAAAAAGAAGATGGGAAAT

. : . : . : . : . : . :
rJMFF043M14+ ATCAAATATGATCCAAAAACACACCAAAATTCACACTAGAAAAAACACAAAAACAAAAGA
rJMFF021O10+ GAAAAAACACNAAAACAAAAGA
rJMFF011N23+ AAAACAAAAGA
rJMFF046I06+ AGA
____________________________________________________________
consensus ATCAAATATGATCCAAAAACACACCAAAATTCACACTAGAAAAAACACAAAAACAAAAGA

. : . : . : . : . : . :
rJMFF043M14+ TAATGTGGTACATGATATTATTCCACCAACACAAACTTTTGTGTTTGCCCATAACTCTGA
rJMFF021O10+ TAATGTGGTACATGATATTATTCCACCAANACNNACTTTTGTGTTTGCCCATAACTCTGA
rJMFF011N23+ TAATGTGGTACATGATATTATTCCACCAACACAAACTTTTGTGTTTGCCCATAACTCTGA
rJMFF046I06+ TAATGTGGTACATGATATTATTCCACCAACACAAACTTTTGTGTTTGCCCATAACTCTGA
rJMFF004D16+ TGTGGTACATGATATTATTCCACCAACACAAACTTTTGTGTTTGCCCATAACTCTGA
____________________________________________________________
consensus TAATGTGGTACATGATATTATTCCACCAACACAAACTTTTGTGTTTGCCCATAACTCTGA

. : . : . : . : . : . :
rJMFF043M14+ CCCTAATAAGCTGGTAAAAAGTTAGAAGAGATCAGCAAGATGGATGGATGAGCAACAACA
rJMFF021O10+ CCCTAATAAGCTGGTAAAAAGTTAGAAGAGATCANCAAGATGGATGGATGAGCAACAACA
rJMFF011N23+ CCCTAATAAGCTGGTAAAAAGTTAGAAGAGATCAGCAAGATGGATGGATGAGCAACAACA
rJMFF046I06+ CCCTAATAAGCTGGTAAAAAGTTAGAAGAGATCAGCAAGATGGATGGATGAGCAACAACA
rJMFF004D16+ CCCTAATAAGCTGGTAAAAAGTTAGAAGAGATCAGCAAGATGGATGGATGAGCAACAACA
____________________________________________________________
consensus CCCTAATAAGCTGGTAAAAAGTTAGAAGAGATCAGCAAGATGGATGGATGAGCAACAACA

. : . : . : . : . : . :
rJMFF043M14+ CCACAACCACAACCACTCCATCTCTATACATGTCTTTTTATATTATTATTTTCCTCAATT
rJMFF021O10+ CCACAACCACAACCACTCCATCTCTATACATGTCTTTTTATATTATTATTTTCCTCAATT
rJMFF011N23+ CCACAACCACAACCACTCCATCTCTATACATGTCTTTTTATATTATTATTTTCCTCAATT
rJMFF046I06+ CCACAACCACAACCACTCCATCTCTATACATGTCTTTTTATATTATTATTTTCCTCAATT
rJMFF004D16+ CCACAACCACAACCACTCCATCTCTATACATGTCTTTTTATATTATTATTTTCCTCAATT
____________________________________________________________
consensus CCACAACCACAACCACTCCATCTCTATACATGTCTTTTTATATTATTATTTTCCTCAATT

. : . : . : . : . : . :
rJMFF043M14+ TTTTTCCTAAAATAATTTAAGGAAATGAAGGAGTGGGTCCCAAAAGAGCCTCCTTTTCTC
rJMFF021O10+ TTTTTCCTAAAATAATTTAAGGAAATGAAGGAGTGGGNCCCAAAAGAGCCTCCTTTTCTC
rJMFF011N23+ TTTTTCCTAAAATAATTTAAGGAAATGAAGGAGTGGGTCCCAAAAGAGCCTCCTTTTCTC
rJMFF046I06+ TTTTTCCTAAAATAATTTAAGGAAATGAAGGAGTGGGTCCCAAAAGAGCCTCCTTTTCTC
rJMFF025L14+ GGAAATGAANGAGTGGGTCCCANAANAGCCTCCTTNTCTC
rJMFF004D16+ TTTTTCCTAAAATAATTTAAGGAAATGAAGGAGTGGGTCCCAAAAGAGCCTCCTTTTCTC
____________________________________________________________
consensus TTTTTCCTAAAATAATTTAAGGAAATGAAGGAGTGGGTCCCAAAAGAGCCTCCTTTTCTC

. : . : . : . : . : . :
rJMFF043M14+ TGCTCTGATGATGAGAATGTTTATCTTCTCTTCTCTTCAAAGTACATGCAGGGGGGGCAA
rJMFF021O10+ TGCTCTGATGATGAGAATGTTTATCTTCTCTTCTCTTCAAAGTACATGCAGGGGGGGCAA
rJMFF011N23+ TGCTCTGATGATGAGAATGTTTATCTTCTCTTCTCTTCAAAGTACATGCAGGGGGGGCAA
rJMFF046I06+ TGCTCTGATGATGAGAATGTTTATCTTCTCTTCTCTTCAAAGTACATGCAGGGGGGGCAA
rJMFF025L14+ TGNTCTGATGATGAGAATGNTTATCTTCTCTTCTCTTCAAAGNACATGCATGGGGGGCAN
rJMFF004D16+ TGCTCTGATGATGAGAATGTTTATCTTCTCTTCTCTTCAAAGTACATGCAGGGGGGGCAA
____________________________________________________________
consensus TGCTCTGATGATGAGAATGTTTATCTTCTCTTCTCTTCAAAGTACATGCAGGGGGGGCAA

. : . : . : . : . : . :
rJMFF043M14+ GAAATTAATAATAGAGGTTTGTGGGGGTCAGTCAAGAGAATAAATGAAAGGCATATGCAC
rJMFF021O10+ GAAATTAATAATA
rJMFF011N23+ GAAATTAATAATAGAGGTTTGTGGGGGTCAGTCAAGAGAATAAATGAAAGGCATATGCAC
rJMFF046I06+ GAAATTAATAATAGAGGTTTGTGGGGGTCAGTCAAGAGAATAAATGAAAGGCATATGCAC
rJMFF025L14+ GAAATTAATANTANANGTTTGTGGG
rJMFF004D16+ GAAATTAATAATAGAGGTTTGTGGGGGTCAGTCAAGAGAATAAATGAAAGGCATATGCAC
____________________________________________________________
consensus GAAATTAATAATAGAGGTTTGTGGGGGTCAGTCAAGAGAATAAATGAAAGGCATATGCAC

. : . : . : . : . : . :
rJMFF043M14+ CAAACACATGCCTTTAACCATTCCCCTGCCCCCATTGCACATGCAACCTGTCCCCCCCCC
rJMFF011N23+ CAAACACATGCCTTTAACCATTCCCCTGCCCCCATTGCACATGCAACCTGTCCCCCCCCC
rJMFF046I06+ CAAACACATGCCTTTAACCATTCCCCTGCCCCCATTGCACATGCAACCTGTCCCCCCCCC
rJMFF004D16+ CAAACACATGCCTTTAACCATTCCCCTGCCCCCATTGCACATGCAACCTGTCCCCCCCCC
____________________________________________________________
consensus CAAACACATGCCTTTAACCATTCCCCTGCCCCCATTGCACATGCAACCTGTCCCCCCCCC

. : . : . : . : . : . :
rJMFF043M14+ CCCCCCCCCAACTCTTATTTTACTTAATTACATCTTTATCTTAAT
rJMFF011N23+ CCCCCCC
rJMFF046I06+ CCCCCCCCCAACTCTTATTTTACTTAATTACATCTTTATCTTAATTAAGAATATAATATG
rJMFF004D16+ CCCCCCC
rJMFF047M05+ ACTTAATTACATCTTTATCTTAATTAAGAATATAATATG
rJMFF028C06+ TCTTAATTAAGAATATAATATG
rJMFF032H02+ TCTTAATTAAGAATATAATATG
____________________________________________________________
consensus CCCCCCCCCAACTCTTATTTTACTTAATTACATCTTTATCTTAATTAAGAATATAATATG

. : . : . : . : . : . :
rJMFF046I06+ -CATGTCACACCTCCCAAATCATATTACAACTTCAAACTACTTGCATC
rJMFF047M05+ -CATGTCACACCTCCCAAATCATATTACAACTTCAAACTACTTGCATCATATCAAACCAA
rJMFF028C06+ -CATGTCACACCTCCCAAATCATATTACAACTTCAAACTACTTGCATCATATCAAACCAA
rJMFF032H02+ GCATGTCACACCTCCCAAATCATATTACAACTTCAAACTACTTGCATCATATCAAACCAA
JMFS085F09- ATCATATCAAACCAA
JMFS085F10- AACCAA
____________________________________________________________
consensus -CATGTCACACCTCCCAAATCATATTACAACTTCAAACTACTTGCATCATATCAAACCAA

. : . : . : . : . : . :
rJMFF047M05+ AAAGTACAACTATCTAGTGTTAATTAGTCAATCATGATAATAAGTCACGATGATTTGTTG
rJMFF028C06+ AAAGTACAACTATCTAGTGTTAATTAGTCAATCATGATAATAAGTCACGATGATTTGTTG
rJMFF032H02+ AAAGTACAACTATCTAGTGTTAATTAGTCAATCATGATAATAAGTCACGATGATTTGTTG
JMFS085F09- AAAGTACAACTATCTAGTGTTAATTAGTCAATCATGATAATAAGTCACGATGATTTGTTG
JMFS085F10- AAAGTACAACTATCTAGTGTTAATTAGTCAATCATGATAATAAGTCACGATGATTTGTTG
____________________________________________________________
consensus AAAGTACAACTATCTAGTGTTAATTAGTCAATCATGATAATAAGTCACGATGATTTGTTG

. : . : . : . : . : . :
rJMFF047M05+ AAGGCAGTTGATTTAGATTGAGGGGGTGGTGGAGGGACGTTGGGGAGCGGCCAGCTCGGC
rJMFF028C06+ AAGGCAGTTGATTTAGATTGAGGGGGTGGTGGAGGGACGTTGGGGAGCGGCCAGCTCGGC
rJMFF032H02+ AAGGCAGTTGATTTAGATTGAGGGGGTGGTGGAGGGACGTTGGGGAGCGGCCAGCTCGGC
JMFS085F09- AAGGCAGTTGATTTAGATTGAGGGGGTGGTGGAGGGACGTTGGGGAGCGGCCAGCTCGGC
JMFS085F10- AAGGCAGTTGATTTAGATTGAGGGGGTGGTGGAGGGACGTTGGGGAGCGGCCAGCTCGGC
____________________________________________________________
consensus AAGGCAGTTGATTTAGATTGAGGGGGTGGTGGAGGGACGTTGGGGAGCGGCCAGCTCGGC

. : . : . : . : . : . :
rJMFF047M05+ GCACGGGTGGTGTCGCGGGCAGGTGGTGAGGTGGTCGTTGGTAAGGCCGGCGGCCTGCAT
rJMFF028C06+ GCACGGGTGGTGTCGCGGGCAGGTGGTGAGGTGGTCGTTGGTAAGGCCGGCGGCCTGCAT
rJMFF032H02+ GCACGGGTGGTGTCGCGGGCAGGTGGTGAGGTGGTCGTTGGTAAGGCCGGCGGCCTGCAT
JMFS085F09- GCACGGGTGGTGTCGCGGGCAGGTGGTGAGGTGGTCGTTGGTAAGGCCGGCGGCCTGCAT
JMFS085F10- GCACGGGTGGTGTCGCGGGCAGGTGGTGAGGTGGTCGTTGGTAAGGCCGGCGGCCTGCAT
____________________________________________________________
consensus GCACGGGTGGTGTCGCGGGCAGGTGGTGAGGTGGTCGTTGGTAAGGCCGGCGGCCTGCAT

. : . : . : . : . : . :
rJMFF047M05+ GAACGAGTGGATGACGGCTGGACCGACGTACCGGAACCCTCTCTTCACCATGTCTTTGCT
rJMFF028C06+ GAACGAGTGGATGACGGTTGGACCGACGTACCGGAACCCTCTCTTCACCATGTCTTTGCT
rJMFF032H02+ GAACGAGTGGATGACGGTTGGACCGACGTACCGGAACCCTCTCTTCACCATGTCTTTGCT
JMFS085F09- GAACGAGTGGATGACGGTTGGACCGACGTACCGGAACCCTCTCTTCACCATGTCTTTGCT
JMFS085F10- GAACGAGTGGATGACGGTTGGACCGACGTACCGGAACCCTCTCTTCACCATGTCTTTGCT
____________________________________________________________
consensus GAACGAGTGGATGACGGTTGGACCGACGTACCGGAACCCTCTCTTCACCATGTCTTTGCT

. : . : . : . : . : . :
rJMFF047M05+ TATGGCTTCTGATTTTGAGGTCTTCACCGGAATCTTGTTGCACCACTTGTACTGTGTGGC
rJMFF028C06+ TATGGCTTCTGATTTTGAGGTCTTCACCGGAATCTTGTTGCACCACTTGTACTGTGTGGC
rJMFF032H02+ TATGGCTTCTGATTTTGAGGTCTTCACCGGAATCTTGTTGCACCACTTGTACTGTGTGGC
JMFS085F09- TATGGCTTCTGATTTTGAGGTCTTCACCGGAATCTTGTTGCACCACTTGTACTGTGTGGC
JMFS085F10- TATGGCTTCTGATTTTGAGGTCTTCACCGGAATCTTGTTGCACCACTTGTACTGTGTGGC
____________________________________________________________
consensus TATGGCTTCTGATTTTGAGGTCTTCACCGGAATCTTGTTGCACCACTTGTACTGTGTGGC

. : . : . : . : . : . :
rJMFF047M05+ AATTGGCTTGTGGTTCACATATGCCCATAGGTAATTATC
rJMFF028C06+ AATTGGCTTGTGGTTCACATATGCCCATAGGTAATTATCAAATGACCCAAATTGCTTCTT
rJMFF032H02+ AATTGGCTTGTGGTTCACATATGCCCATAGGTAATTATCAAATGACCCAAATTGCTTCTT
JMFS085F09- AATTGGCTTGTGGTTCACATATGCCCATAGGTAATTATCAAATGACCCAAATTGCTTCTT
JMFS085F10- AATTGGCTTGTGGTTCACATATGCCCATAGGTAATTATCAAATGACCCAAATTGCTTCTT
____________________________________________________________
consensus AATTGGCTTGTGGTTCACATATGCCCATAGGTAATTATCAAATGACCCAAATTGCTTCTT

. : . : . : . : . : . :
rJMFF028C06+ GACCTCAAGAATTCTGATAGAGTTGTCAACAGCTCCTCTCACTTGGCTCAATTCTATGCC
rJMFF032H02+ GATCTCAAGAATTCTGATAGAGTTGTCAACAGCTCCTCTCACTTGGCTCAATTCTATGCC
JMFS085F09- GACCTCAAGAATTCTGATAGAGTTGTCAACAGCTCCTCTCACTTGGCTCAATTCTATGCC
JMFS085F10- GACCTCAAGAATTCTGATAGAGTTGTCAACAGCTCCTCTCACTTGGCTCAATTCTATGCC
____________________________________________________________
consensus GACCTCAAGAATTCTGATAGAGTTGTCAACAGCTCCTCTCACTTGGCTCAATTCTATGCC

. : . : . : . : . : . :
rJMFF028C06+ ATATTCAGCACTTACAGAAGTTATCTTCTTCTCTGTGTATTTTGAAACTGCTTCTGCATC
rJMFF032H02+ ATATTCAGCACTTACAGAAGTTATCTTCTTCTCTGTGTATTTTGAAACTGCTTCTGCATC
JMFS085F09- ATATTCAGCACTTACAGAAGTTATCTTCTTCTCTGTGTATTTTGAAACTGCTTCTGCATC
JMFS085F10- ATATTCAGCACTTACAGAAGTTATCTTCTTCTCTGTGTATTTTGAAACTGCTTCTGCATC
____________________________________________________________
consensus ATATTCAGCACTTACAGAAGTTATCTTCTTCTCTGTGTATTTTGAAACTGCTTCTGCATC

. : . : . : . : . : . :
rJMFF028C06+ AAACCCTGAAAATGCATCCCTGAAATCTTGCCTTTTCTTCAAGACAATTGTCCAATCTGA
rJMFF032H02+ AAACCCTGAAAATGCATCCCTGAAATCTTGCCTTTTCTTCAAGACAATTGTCCAATCTGA
JMFS085F09- AAACCCTGAAAATGCATCCCTGAAATCTTGCCTTTTCTTCAAGACAATTGTCCAATCTGA
JMFS085F10- AAACCCTGAAAATGCATCCCTGAAATCTTGCCTTTTCTTCAAGACAATTGTCCAATCTGA
____________________________________________________________
consensus AAACCCTGAAAATGCATCCCTGAAATCTTGCCTTTTCTTCAAGACAATTGTCCAATCTGA

. : . : . : . : . : . :
rJMFF028C06+ TCCAACTTGTGCACCANTTAACACCAATAGTTCAAACAACATGTTATC
rJMFF032H02+ TCCAACTTGTGCACCAGTTAACACCAATAGTTCAAACAACATGTTATC
JMFS085F09- TCCAACTTGTGCACCAGTTAACACCAATAGTTCAAACAACAAGTTATCTTCTTCTCTGTG
JMFS085F10- TCCAACTTGTGCACCAGTTAACACCAATAGTTCAAACAACAAGTTATCTTCTTCTCTGTG
____________________________________________________________
consensus TCCAACTTGTGCACCAGTTAACACCAATAGTTCAAACAACAAGTTATCTTCTTCTCTGTG

. : . : . : . : . : . :
JMFS085F09- TATTTTGAAACT
JMFS085F10- TATTTTGAAACT
____________________________________________________________
consensus TATTTTGAAACT