Alignment Contig 13724

                          .    :    .    :    .    :    .    :    .    :    .    :

rJMFF025J06+ TTTCTCGTCTAGAAACAAGCTTTAAAAAGTACCAAGTACTCCGTATCTTTTACAACTCAG
rJMSF042C24+ ACTCAG
rJMSF034D12+ AAAAGTACCAAGTACTCCGTATCTTTTACAACTCAG
rJMSF036N18+ AGTACTCCGTATCTTTTACAACTCAG
rJMSF017N06+ CAACTCAG
____________________________________________________________
consensus TTTCTCGTCTAGAAACAAGCTTTAAAAAGTACCAAGTACTCCGTATCTTTTACAACTCAG

. : . : . : . : . : . :
rJMFF025J06+ TAAATATACAAAAATAAATCTACTTGAAACAATGCTTGGGAGGGGAAGGTTTAACTTAGT
rJMSF042C24+ TAAATATACAAAAATAAATCTACTTGAAACAATGCTTGGGAGGGGAAGGTTTAACTTAGT
rJMSF034D12+ TAAATATACAAAAATAAATCTACTTGAAACAATGCTTGGGAGGGGAAGGTTTAACTTAGT
rJMSF036N18+ TAAATATACAAAAATAAATCTACTTGAAACAATGCTTGGGAGGGGAAGGTTTAACTTAGT
rJMSF017N06+ TAAATATACAAAAATAAATCTACTTGAAACAATGCTTGGGAGGGGAAGGTTTAACTTAGT
____________________________________________________________
consensus TAAATATACAAAAATAAATCTACTTGAAACAATGCTTGGGAGGGGAAGGTTTAACTTAGT

. : . : . : . : . : . :
rJMFF025J06+ TCAGTTTACAGGCCTCGTGAAAATAGAATCACCAAAAAAGGAGACTGGAACAAGGATTAT
rJMSF042C24+ TCAGTTTACAGGCCTCGTGAAAATAGAATCACCAAAAAAGGAGACTGGAACAAGGATTAT
rJMSF034D12+ TCAGTTTACAGGCCTCGTGAAAATAGAATCACCAAAAAAGGAGACTGGAACAAGGATTAT
rJMSF036N18+ TCAGTTTACAGGCCTCGTGAAAATAGAATCACCAAAAAAGGAGACTGGAACAAGGATTAT
rJMSF017N06+ TCAGTTTACAGGCCTCGTGAAAATAGAATCACCAAAAAAGGAGACTGGAACAAGGATTAT
____________________________________________________________
consensus TCAGTTTACAGGCCTCGTGAAAATAGAATCACCAAAAAAGGAGACTGGAACAAGGATTAT

. : . : . : . : . : . :
rJMFF025J06+ TATTAAAAGTAGCATATACAAACACATAATCTGTCCTTTATTGGTAGAAATCAAATCACT
rJMSF042C24+ TATTAAAAGTAGCATATACAAACACATAATCTGTCCTTTATTGGTAGAAATCAAATCACT
rJMSF034D12+ TATTAAAAGTAGCATATACAAACACATAATCTGTCCTTTATTGGTAGAAATCAAATCACT
rJMSF036N18+ TATTAAAAGTAGCATATACAAACACATAATCTGTCCTTTATTGGTAGAAATCAAATCACT
rJMSF017N06+ TATTAAAAGTAGCATATACAAACACATAATCTGTCCTTTATTGGTAGAAATCAAATCACT
____________________________________________________________
consensus TATTAAAAGTAGCATATACAAACACATAATCTGTCCTTTATTGGTAGAAATCAAATCACT

. : . : . : . : . : . :
rJMFF025J06+ AATAAGTGAAATGGATAGATATTAGATAATGGAATGCCTTCTCAAACAAGATTTATTGTA
rJMSF042C24+ AATAAGTGAAATGGATAGATGTTAGATAATGGAATGCCTTCTCAAACAAGATTTATTGTA
rJMSF034D12+ AATAAGTGAAATGGATAGATATTAGATAATGGAATGCCTTCTCAAACAAGATTTATTGTA
rJMSF036N18+ AATAAGTGAAATGGATAGATATTAGATAATGGAATGCCTTCTCAAACAAGATTTATTGTA
rJMSF017N06+ AATAAGTGAAATGGATAGATGTTAGATAATGGAATGCCTTCTCAAACAAGATTTATTGTA
____________________________________________________________
consensus AATAAGTGAAATGGATAGATATTAGATAATGGAATGCCTTCTCAAACAAGATTTATTGTA

. : . : . : . : . : . :
rJMFF025J06+ AAGGAGACGTAAGGGTGCACCTCCGCATCACCTCCGAAAGCACCAACAGCTCCTTCGTCC
rJMSF042C24+ AAGGAGACGTAAGGGTGCACCTCCGCATCACCTCCGAAAGCACCAACAGCTCCTTCGTCC
rJMSF034D12+ AAGGAGACGTAAGGGTGCACCTCCGCATCACCTCCGAAAGCACCAACAGCTCCTTCGTCC
rJMSF036N18+ AAGGAGACGTAAGGGTGCACCTCCGCATCACCTCCGAAAGCACCAACAGCTCCTTCGTCC
rJMSF017N06+ AAGGAGACGTAAGGGTGCACCTCCGCATCACCTCCGAAAGCACCAACAGCTCCTTCGTCC
____________________________________________________________
consensus AAGGAGACGTAAGGGTGCACCTCCGCATCACCTCCGAAAGCACCAACAGCTCCTTCGTCC

. : . : . : . : . : . :
rJMFF025J06+ TCAGTTTTCCAGTAGGTGCTGTTTGAACTGTCACAGAGTGACTCCAGAATTGACCGCACT
rJMSF042C24+ TCAGTTTTCCAGTAGGTGCTGTTTGAACTGTCACAGAGTGACTCCAGAATTGACCGCACT
rJMSF034D12+ TCAGTTTTCCAGTAGGTGCTGTTTGAACTGTCACAGAGTGACTCCAGAATTGACCGCACT
rJMSF036N18+ TCAGTTTTCCAGTAGGTGCTGTTTGAACTGTCACAGAGTGACTCCAGAATTGACCGCACT
rJMSF017N06+ TCAGTTTTCCAGTAGGTGCTGTTTGAACTGTCACAGAGTGACTCCAGAATTGACCGCACT
____________________________________________________________
consensus TCAGTTTTCCAGTAGGTGCTGTTTGAACTGTCACAGAGTGACTCCAGAATTGACCGCACT

. : . : . : . : . : . :
rJMFF025J06+ CTCTTCTCACTTTTCACCGATGGTGATAAGACAACAGACAAGAAGGATGGAGGTAAGCCA
rJMSF042C24+ CTCTTCTCACTTTTCACCGATGGTGATAAGACAACAGACAAGAAGGATGGAGGTAAGCCA
rJMSF034D12+ CTCTTCTCACTTTTCACCGATGGTGATAAGACAACAGACAAGAAGGATGGAGGTAAGCCA
rJMSF036N18+ CTCTTCTCACTTTTCACCGATGGTGATAAGACAACAGACAAGAAGGATGGAGGTAAGCCA
rJMSF017N06+ CTCTTCTCACTTTTCACCGATGGTGATAAGACAACAGACAAGAAGGATGGAGGTAAGCCA
____________________________________________________________
consensus CTCTTCTCACTTTTCACCGATGGTGATAAGACAACAGACAAGAAGGATGGAGGTAAGCCA

. : . : . : . : . : . :
rJMFF025J06+ TATCTCAGAATGCTTTCAGCAAAGACACGTACAGCACAAAAGTGCATCCAGGAGCTGAAA
rJMSF042C24+ TATCTCAGAATGCTTTCAGCAAAGACACGTACAGCACAAAAGTGCATCCAGGAGCTGAAA
rJMSF034D12+ TATCTCAGAATGCTTTCAGCAAAGACACGTACAGCACAAAAGTGCATCCAGGAGCTGAAA
rJMSF036N18+ TATCTCAGAATGCTTTCAGCAAAGACACGTACAGCACAAAAGTGCATCCAGGAGCTGAAA
rJMSF017N06+ TATCTCAGAATGCTTTCAGCAAAGACACGTACAGCACAAAAGTGCATCCAGGAGCTGAAA
____________________________________________________________
consensus TATCTCAGAATGCTTTCAGCAAAGACACGTACAGCACAAAAGTGCATCCAGGAGCTGAAA

. : . : . : . : . : . :
rJMFF025J06+ ACCTCCCCATAACTGGTATAGCACCATTGCAAAAGAGAGCTTCGGAATGTTTCTTGGTCC
rJMSF042C24+ ACCTCCCCATAACTGGTATAGCACCATTGCAAAAGAGAGCTTCGGAATGTTTCTTGGTCC
rJMSF034D12+ ACCTCCCCATAACTGGTATAGCACCATTGCAAAAGAGAGCTTCGGAATGTTTCTTGGTCC
rJMSF036N18+ ACCTCCCCATAACTGGTATAGCACCATTGCAAAAGAGAGCTTCGGAATGTTTCTTGGTCC
rJMSF017N06+ ACCTCCCCATAACTGGTATAGCACCATTGCAAAAGAGAGCTTCGGAATGTTTCTTGGTCC
____________________________________________________________
consensus ACCTCCCCATAACTGGTATAGCACCATTGCAAAAGAGAGCTTCGGAATGTTTCTTGGTCC

. : . : . : . : . : . :
rJMFF025J06+ TGCATCAGTTTTTCCAGCTCTTGTTTCCGACTTTCATGTGTTTCAGGATTATACTCAAAA
rJMSF042C24+ TGCATCAGTTTTTCCAGCTCTTGTTTCCGACTTTCATGTGTTTCAGGATTATACTCAAAA
rJMSF034D12+ TGCATCAGTTTTTCCAGCTCTTGTTTCCGACTTTCATGTGTTTCAGGATTATACTCAAAA
rJMSF036N18+ TGCATCAGTTTTTCCAGCTCTTGTTTCCGACTTTCATGTGTTTCAGGATTATACTCAAAA
rJMSF017N06+ TGCATCAGTTTTTCCAGCTCTTGTTTCCGACTTTCATGTGTTTCAGGATTATACTCAAAA
____________________________________________________________
consensus TGCATCAGTTTTTCCAGCTCTTGTTTCCGACTTTCATGTGTTTCAGGATTATACTCAAAA

. : . : . : . : . : . :
rJMFF025J06+ TCACGAATTTGGAAGCCTCTTTCACGTGCCTTAATCCTAAAATTGTCAGCATCACGAGTG
rJMSF042C24+ TCACGAATTTGGAAGCCTCTTTCACGTGCCTTAATCCTAAAATTGTCAGCATCACGAGTG
rJMSF034D12+ TCACGAATTTGGAAGCCTCTTTCACGTGCCTTAATCCTAAAATTGTCAGCATCACGAGTG
rJMSF036N18+ TCACGAATTTGGAAGCCTCTTTCACGTGCCTTAATCCTAAAATTGTCAGCATCAC
rJMSF017N06+ TCACGAATTTGGAAGCCTCTTTCACGTGCCTTAATCCTAAAATTGTCAGCATCACGAGTG
____________________________________________________________
consensus TCACGAATTTGGAAGCCTCTTTCACGTGCCTTAATCCTAAAATTGTCAGCATCACGAGTG

. : . : . : . : . : . :
rJMFF025J06+ AATAACGTTACAGTATAAAGAGCATACTCATTGTCCTCATACAGCTTCTTAGAGGATCTG
rJMSF042C24+ AATAACGTTACAGTATAAAGAGCATACTCATTGTCCTCATACAGCTTCTTAGAGGATCTG
rJMSF034D12+ AATAACGTTACAGTATAAAGAGCATACTCATTGTCCTCATACAGCTTCT
rJMSF017N06+ AATAACGTTACAGTATAAAGAGCATACTCATTGTCCTCATACAGCTTCTTANAGGATCTG
____________________________________________________________
consensus AATAACGTTACAGTATAAAGAGCATACTCATTGTCCTCATACAGCTTCTTAGAGGATCTG

. : . : . : . : . : . :
rJMFF025J06+ GGAA
rJMSF042C24+ GG
rJMSF017N06+ GGAACCACATAGGAAGTGAGTGTCTCATAGCTAGCCNA
____________________________________________________________
consensus GGAACCACATAGGAAGTGAGTGTCTCATAGCTAGCCNA